PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000483095	[[182615238, 182616052], [182617271, 182617438], [182635103, 182635168], [182636006, 182636108], [182638758, 182638887], [182640791, 182640865], [182640983, 182641064]]	[[182615869, 182616052], [182617271, 182617438], [182635103, 182635168], [182636006, 182636108], [182638758, 182638784]]
ENST00000258302	[[182615791, 182616052], [182617271, 182617438], [182635103, 182635168], [182636006, 182636108], [182640791, 182640865], [182641953, 182642049]]	[[182615869, 182616052], [182617271, 182617438], [182635103, 182635168], [182636006, 182636108], [182640791, 182640865], [182641953, 182641959]]
ENST00000367557	[[182615820, 182616052], [182617271, 182617438], [182635103, 182635168], [182636006, 182636108], [182638758, 182638887], [182640791, 182640865], [182641953, 182642043]]	[[182615869, 182616052], [182617271, 182617438], [182635103, 182635168], [182636006, 182636108], [182638758, 182638784]]
ENST00000367556	[[182615869, 182616052], [182617271, 182617438], [182635103, 182635168], [182636006, 182636108], [182638758, 182638887], [182640791, 182640988]]	[[182615869, 182616052], [182617271, 182617438], [182635103, 182635168], [182636006, 182636108], [182638758, 182638784]]
ENST00000491420	[[182627503, 182627800], [182635103, 182635168], [182636006, 182636108], [182638758, 182638887], [182640791, 182640865], [182641953, 182642067]]	None
ENST00000508450	[[182635125, 182635168], [182636006, 182636108], [182638758, 182638887], [182640791, 182640865], [182641171, 182641386]]	[[182635125, 182635168], [182636006, 182636108], [182638758, 182638784]]
ENST00000515211	[[182636080, 182636108], [182638758, 182638887], [182640791, 182640865], [182641953, 182642067], [182653490, 182653711]]	None
NM_001102450	[[182610948, 182616052], [182617271, 182617438], [182635103, 182635168], [182636006, 182636108], [182638758, 182638887], [182640791, 182640865], [182641953, 182642067]]	[[182615869, 182616052], [182617271, 182617438], [182635103, 182635168], [182636006, 182636108], [182638758, 182638784]]
NM_033345	[[182610948, 182616052], [182617271, 182617438], [182635103, 182635168], [182636006, 182636108], [182640791, 182640865], [182641953, 182642067]]	[[182615869, 182616052], [182617271, 182617438], [182635103, 182635168], [182636006, 182636108], [182640791, 182640865], [182641953, 182641959]]

Promoter

Chrom	Start	End	Description
chr1	182640923	182640935	CAGE_peak_6_at_RGS8_5end
chr1	182641015	182641033	CAGE_peak_3_at_RGS8_5end
chr1	182641037	182641068	CAGE_peak_2_at_RGS8_5end
chr1	182641367	182641378	CAGE_peak_7_at_RGS8_5end
chr1	182641988	182641999	CAGE_peak_9_at_RGS8_5end
chr1	182642017	182642048	CAGE_peak_4_at_RGS8_5end
chr1	182653685	182653730	CAGE_peak_1_at_RGS8_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I182672	182672847	182672906	0.68	[{'connected_gene': 'RGS8', 'score': 550.18}, {'connected_gene': 'RGS16', 'score': 10.68}, {'connected_gene': 'GC01M182641', 'score': 0.31}, {'connected_gene': 'LINC01688', 'score': 0.28}, {'connected_gene': 'GC01P182625', 'score': 0.25}]
chr1	GH01I182671	182671914	182671973	0.61	[{'connected_gene': 'RGS8', 'score': 550.18}, {'connected_gene': 'RGS16', 'score': 10.68}, {'connected_gene': 'GC01M182641', 'score': 0.31}, {'connected_gene': 'LINC01688', 'score': 0.26}, {'connected_gene': 'GC01P182625', 'score': 0.25}]
chr1	GH01I182753	182752446	182752595	0.2	[{'connected_gene': 'RGS8', 'score': 550.77}, {'connected_gene': 'RGS16', 'score': 11.1}, {'connected_gene': 'LOC100421471', 'score': 0.37}]
chr1	GH01I182752	182752047	182752355	0.2	[{'connected_gene': 'RGS8', 'score': 550.77}, {'connected_gene': 'RGS16', 'score': 11.1}, {'connected_gene': 'LOC100421471', 'score': 0.37}]
chr1	GH01I182651	182651548	182652025	0.2	[{'connected_gene': 'RGS8', 'score': 11.09}, {'connected_gene': 'GC01M182641', 'score': 0.44}, {'connected_gene': 'GC01P182625', 'score': 0.31}, {'connected_gene': 'LINC01688', 'score': 0.21}]
chr1	GH01I182662	182662666	182662835	0.38	[{'connected_gene': 'RGS8', 'score': 11.04}, {'connected_gene': 'GC01M182641', 'score': 0.37}, {'connected_gene': 'GC01P182625', 'score': 0.28}, {'connected_gene': 'LINC01688', 'score': 0.25}]
chr1	GH01I182633	182633367	182634745	1.11	[{'connected_gene': 'RGS16', 'score': 12.21}, {'connected_gene': 'RGS8', 'score': 11.21}, {'connected_gene': 'GC01M182641', 'score': 0.44}, {'connected_gene': 'GC01P182625', 'score': 0.44}]
chr1	GH01I182632	182632601	182632800	1.04	[{'connected_gene': 'RGS16', 'score': 11.68}, {'connected_gene': 'RGS8', 'score': 11.18}, {'connected_gene': 'GC01P182625', 'score': 0.44}, {'connected_gene': 'GC01M182641', 'score': 0.39}]
chr1	GH01I182674	182674061	182677043	0.71	[{'connected_gene': 'RGS16', 'score': 12.35}, {'connected_gene': 'GC01M182641', 'score': 0.29}, {'connected_gene': 'LINC01688', 'score': 0.28}, {'connected_gene': 'GC01P182625', 'score': 0.25}, {'connected_gene': 'RGS8', 'score': 0.18}]
chr1	GH01I182686	182686935	182689034	0.62	[{'connected_gene': 'RGS16', 'score': 10.37}, {'connected_gene': 'LINC01688', 'score': 7.38}, {'connected_gene': 'GC01M182641', 'score': 0.26}, {'connected_gene': 'RGS8', 'score': 0.2}]
chr1	GH01I182738	182738756	182740245	0.71	[{'connected_gene': 'RGS16', 'score': 10.54}, {'connected_gene': 'LOC100421471', 'score': 0.44}, {'connected_gene': 'RGS8', 'score': 0.39}]
chr1	GH01I182781	182781594	182782379	0.88	[{'connected_gene': 'DHX9', 'score': 11.02}, {'connected_gene': 'NPL', 'score': 0.44}, {'connected_gene': 'RGS8', 'score': 0.31}]
chr1	GH01I182782	182782386	182782595	0.85	[{'connected_gene': 'DHX9', 'score': 11.02}, {'connected_gene': 'NPL', 'score': 0.44}, {'connected_gene': 'RGS8', 'score': 0.31}]
chr1	GH01I182713	182713787	182713873	0.44	[{'connected_gene': 'LINC01688', 'score': 550.77}, {'connected_gene': 'RGS8', 'score': 11.36}, {'connected_gene': 'RGS16', 'score': 10.93}, {'connected_gene': 'DHX9', 'score': 1.39}, {'connected_gene': 'LOC100421471', 'score': 0.37}]
chr1	GH01I182698	182698990	182700697	0.74	[{'connected_gene': 'LINC01688', 'score': 0.39}, {'connected_gene': 'RGS8', 'score': 0.23}, {'connected_gene': 'GC01M182641', 'score': 0.22}]
chr1	GH01I182643	182643826	182643955	0.38	[{'connected_gene': 'GC01M182641', 'score': 550.77}, {'connected_gene': 'RGS16', 'score': 10.98}, {'connected_gene': 'RGS8', 'score': 10.72}, {'connected_gene': 'GC01P182625', 'score': 0.37}, {'connected_gene': 'LINC01688', 'score': 0.2}]
chr1	GH01I182677	182677546	182677695	0.69	[{'connected_gene': 'GC01M182641', 'score': 0.29}, {'connected_gene': 'LINC01688', 'score': 0.28}, {'connected_gene': 'GC01P182625', 'score': 0.23}, {'connected_gene': 'RGS8', 'score': 0.18}]