PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000309534	[[88101093, 88105149], [88107168, 88107373], [88107964, 88108198]]	[[88104622, 88105126]]
ENST00000398392	[[88101161, 88106459]]	[[88104622, 88105126]]
ENST00000482016	[[88104563, 88105149], [88106340, 88106442], [88107168, 88107373], [88107964, 88108218]]	[[88104622, 88105126]]
ENST00000462901	[[88104575, 88105149], [88107168, 88107373], [88190119, 88190228], [88198860, 88199035]]	[[88104622, 88105126]]
ENST00000467332	[[88104807, 88105149], [88190119, 88190228], [88198860, 88198965]]	[[88104807, 88105126]]
ENST00000474441	[[88106787, 88107373], [88107964, 88108095]]	None
NM_001008390	[[88101099, 88105149], [88106340, 88106442], [88107168, 88107373], [88107964, 88108146]]	[[88104622, 88105126]]
NM_003663	[[88101099, 88105149], [88107168, 88107373], [88107964, 88108146]]	[[88104622, 88105126]]
NM_001195308	[[88101099, 88105149], [88107168, 88107373], [88190119, 88190228], [88198860, 88199016]]	[[88104622, 88105126]]

Promoter

Chrom	Start	End	Description
chr3	88108083	88108179	CAGE_peak_1_at_CGGBP1_5end
chr3	88108192	88108203	CAGE_peak_5_at_CGGBP1_5end
chr3	88108212	88108223	CAGE_peak_3_at_CGGBP1_5end
chr3	88199008	88199035	CAGE_peak_2_at_CGGBP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I088030	88030106	88030800	1.04	[{'connected_gene': 'CGGBP1', 'score': 8.61}, {'connected_gene': 'ZNF654', 'score': 4.84}, {'connected_gene': 'C3orf38', 'score': 2.15}, {'connected_gene': 'GC03P088032', 'score': 0.77}, {'connected_gene': 'RNU6ATAC6P', 'score': 0.13}]
chr3	GH03I088140	88140784	88143559	0.86	[{'connected_gene': 'CGGBP1', 'score': 11.11}, {'connected_gene': 'ZNF654', 'score': 8.65}, {'connected_gene': 'C3orf38', 'score': 0.44}, {'connected_gene': 'GC03P088128', 'score': 0.39}, {'connected_gene': 'GC03P088045', 'score': 0.15}]
chr3	GH03I088057	88057070	88061103	2.23	[{'connected_gene': 'CGGBP1', 'score': 591.54}, {'connected_gene': 'ZNF654', 'score': 569.26}, {'connected_gene': 'C3orf38', 'score': 11.24}, {'connected_gene': 'GC03P088045', 'score': 0.39}]
chr3	GH03I087804	87804937	87805953	0.46	[{'connected_gene': 'CGGBP1', 'score': 7.78}, {'connected_gene': 'HTR1F', 'score': 5.64}, {'connected_gene': 'LOC105377198', 'score': 0.39}, {'connected_gene': 'PIR56827', 'score': 0.15}]
chr3	GH03I087996	87996801	87997800	0.85	[{'connected_gene': 'CGGBP1', 'score': 5.29}, {'connected_gene': 'C3orf38', 'score': 1.87}, {'connected_gene': 'ZNF654', 'score': 1.55}, {'connected_gene': 'GC03P088032', 'score': 0.28}, {'connected_gene': 'RNU6ATAC6P', 'score': 0.17}]
chr3	GH03I088148	88148330	88151977	2.08	[{'connected_gene': 'CGGBP1', 'score': 566.29}, {'connected_gene': 'C3orf38', 'score': 550.77}, {'connected_gene': 'ZNF654', 'score': 19.97}, {'connected_gene': 'GC03P088161', 'score': 0.39}, {'connected_gene': 'GC03P088045', 'score': 0.14}]
chr3	GH03I087969	87969461	87970432	0.38	[{'connected_gene': 'CGGBP1', 'score': 8.59}, {'connected_gene': 'RNU6ATAC6P', 'score': 0.22}, {'connected_gene': 'GC03P088032', 'score': 0.21}, {'connected_gene': 'HTR1F', 'score': 0.1}]
chr3	GH03I087859	87859001	87859200	0.2	[{'connected_gene': 'CGGBP1', 'score': 8.73}, {'connected_gene': 'PIR56827', 'score': 0.26}, {'connected_gene': 'LOC105377198', 'score': 0.2}, {'connected_gene': 'HTR1F', 'score': 0.2}]
chr3	GH03I088064	88064311	88064960	0.2	[{'connected_gene': 'ZNF654', 'score': 8.37}, {'connected_gene': 'GC03P088045', 'score': 0.37}, {'connected_gene': 'GC03M088095', 'score': 0.29}, {'connected_gene': 'CGGBP1', 'score': 0.17}]
chr3	GH03I088051	88051986	88052796	0.2	[{'connected_gene': 'ZNF654', 'score': 8.56}, {'connected_gene': 'GC03P088045', 'score': 0.44}, {'connected_gene': 'CGGBP1', 'score': 0.15}]
chr3	GH03I088152	88152801	88153400	0.38	[{'connected_gene': 'ZNF654', 'score': 8.54}, {'connected_gene': 'C3orf38', 'score': 0.77}, {'connected_gene': 'CGGBP1', 'score': 0.77}, {'connected_gene': 'GC03P088161', 'score': 0.44}, {'connected_gene': 'GC03P088045', 'score': 0.14}]
chr3	GH03I088139	88139092	88139151	0.5	[{'connected_gene': 'ZNF654', 'score': 550.18}, {'connected_gene': 'C3orf38', 'score': 0.39}, {'connected_gene': 'CGGBP1', 'score': 0.39}, {'connected_gene': 'GC03P088128', 'score': 0.39}, {'connected_gene': 'GC03P088045', 'score': 0.16}]
chr3	GH03I087800	87800054	87801939	0.95	[{'connected_gene': 'HTR1F', 'score': 9.09}, {'connected_gene': 'CGGBP1', 'score': 5.98}, {'connected_gene': 'LOC105377198', 'score': 0.44}, {'connected_gene': 'PIR56827', 'score': 0.15}]
chr3	GH03I087795	87795169	87799379	1.35	[{'connected_gene': 'HTR1F', 'score': 9.35}, {'connected_gene': 'CGGBP1', 'score': 5.22}, {'connected_gene': 'LOC105377198', 'score': 0.77}, {'connected_gene': 'PIR56827', 'score': 0.15}]
chr3	GH03I087791	87791898	87794827	1.28	[{'connected_gene': 'HTR1F', 'score': 558.9}, {'connected_gene': 'LOC105377198', 'score': 550.77}, {'connected_gene': 'CGGBP1', 'score': 56.5}, {'connected_gene': 'ZNF654', 'score': 52.22}, {'connected_gene': 'VGLL3', 'score': 10.66}]
chr3	GH03I088113	88113691	88113840	0.52	[{'connected_gene': 'C3orf38', 'score': 11.91}, {'connected_gene': 'CGGBP1', 'score': 11.91}, {'connected_gene': 'ZNF654', 'score': 8.17}, {'connected_gene': 'GC03P088128', 'score': 0.39}, {'connected_gene': 'CBX5P1', 'score': 0.37}, {'connected_gene': 'GC03P088045', 'score': 0.2}]
chr3	GH03I088038	88038711	88038860	0.2	[{'connected_gene': 'C3orf38', 'score': 11.0}, {'connected_gene': 'CGGBP1', 'score': 11.0}, {'connected_gene': 'GC03P088045', 'score': 0.44}, {'connected_gene': 'GC03P088032', 'score': 0.44}]
chr3	GH03I088031	88031171	88033381	1.05	[{'connected_gene': 'GC03P088032', 'score': 550.77}, {'connected_gene': 'CGGBP1', 'score': 8.26}, {'connected_gene': 'HTR1F', 'score': 4.45}, {'connected_gene': 'RNU6ATAC6P', 'score': 0.13}]
chr3	GH03I088033	88033618	88034957	0.87	[{'connected_gene': 'GC03P088032', 'score': 550.77}, {'connected_gene': 'CGGBP1', 'score': 19.45}, {'connected_gene': 'HTR1F', 'score': 4.45}, {'connected_gene': 'GC03P088045', 'score': 0.39}]
chr3	GH03I088159	88159770	88160187	0.28	[{'connected_gene': 'GC03P088161', 'score': 550.77}, {'connected_gene': 'ZNF654', 'score': 8.5}, {'connected_gene': 'C3orf38', 'score': 2.05}, {'connected_gene': 'CGGBP1', 'score': 1.79}, {'connected_gene': 'GC03P088045', 'score': 0.13}]