PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000337478	[[106071893, 106075822], [106098003, 106098162]]	[[106074165, 106075809]]
ENST00000278071	[[106071900, 106075822], [106093095, 106093256], [106093384, 106093663]]	[[106074165, 106075809]]
ENST00000358187	[[106071901, 106075822], [106088622, 106088682]]	[[106074165, 106075809]]
ENST00000458723	[[106075466, 106075822], [106093095, 106093256], [106093384, 106093663]]	[[106075466, 106075809]]
NM_001272012	[[106069453, 106075822], [106088622, 106088750]]	[[106074165, 106075809]]
NM_033397	[[106069453, 106075822], [106093095, 106093256], [106093384, 106093663]]	[[106074165, 106075809]]
NM_001272013	[[106069453, 106075822], [106098003, 106098251]]	[[106074165, 106075809]]

Promoter

Chrom	Start	End	Description
chr10	106093192	106093215	CAGE_peak_11_at_ITPRIP_5end
chr10	106098163	106098181	CAGE_peak_2_at_ITPRIP_5end
chr10	106098189	106098232	CAGE_peak_1_at_ITPRIP_5end
chr10	106098442	106098447	CAGE_peak_3_at_ITPRIP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I103569	103569275	103573848	0.83	[{'connected_gene': 'NEURL1', 'score': 5.38}, {'connected_gene': 'NEURL1-AS1', 'score': 4.31}, {'connected_gene': 'ITPRIP', 'score': 4.16}, {'connected_gene': 'GC10P103582', 'score': 0.39}, {'connected_gene': 'ENSG00000226431', 'score': 0.34}]
chr10	GH10I103563	103563368	103566032	0.65	[{'connected_gene': 'ITPRIP', 'score': 4.98}, {'connected_gene': 'NEURL1', 'score': 4.11}, {'connected_gene': 'SFXN2', 'score': 4.05}, {'connected_gene': 'ENSG00000226431', 'score': 0.37}, {'connected_gene': 'GC10P103582', 'score': 0.37}]
chr10	GH10I104342	104342163	104344557	0.89	[{'connected_gene': 'ITPRIP', 'score': 25.46}, {'connected_gene': 'CFAP58', 'score': 0.77}, {'connected_gene': 'CFAP58-AS1', 'score': 0.39}]
chr10	GH10I104345	104345543	104346352	1.09	[{'connected_gene': 'ITPRIP', 'score': 23.75}, {'connected_gene': 'SFR1', 'score': 5.82}, {'connected_gene': 'GSTO1', 'score': 3.94}, {'connected_gene': 'CFAP58', 'score': 3.66}, {'connected_gene': 'CFAP58-AS1', 'score': 0.44}]
chr10	GH10I104316	104316368	104341174	2.81	[{'connected_gene': 'ITPRIP', 'score': 578.89}, {'connected_gene': 'GSTO2', 'score': 20.11}, {'connected_gene': 'PDCD11', 'score': 19.85}, {'connected_gene': 'CFAP58', 'score': 18.41}, {'connected_gene': 'SFR1', 'score': 15.41}, {'connected_gene': 'CFAP58-AS1', 'score': 12.26}, {'connected_gene': 'PCGF6', 'score': 10.39}, {'connected_gene': 'TAF5', 'score': 10.36}, {'connected_gene': 'ENSG00000260461', 'score': 10.23}, {'connected_gene': 'GSTO1', 'score': 9.75}, {'connected_gene': 'SLK', 'score': 3.03}, {'connected_gene': 'LOC101927472', 'score': 0.44}]
chr10	GH10I104347	104347048	104348179	0.92	[{'connected_gene': 'ITPRIP', 'score': 24.3}, {'connected_gene': 'CFAP58-AS1', 'score': 0.44}, {'connected_gene': 'CFAP58', 'score': 0.44}]
chr10	GH10I104348	104348741	104354232	2.53	[{'connected_gene': 'CFAP58', 'score': 575.17}, {'connected_gene': 'ITPRIP', 'score': 27.03}, {'connected_gene': 'PDCD11', 'score': 11.74}, {'connected_gene': 'ENSG00000260461', 'score': 10.23}, {'connected_gene': 'SFR1', 'score': 4.21}, {'connected_gene': 'GSTO1', 'score': 2.05}, {'connected_gene': 'SLK', 'score': 1.73}, {'connected_gene': 'CFAP58-AS1', 'score': 0.77}]
chr10	GH10I104258	104258914	104261909	1.46	[{'connected_gene': 'GSTO2', 'score': 35.57}, {'connected_gene': 'GSTO1', 'score': 23.89}, {'connected_gene': 'MIR609', 'score': 10.65}, {'connected_gene': 'SFR1', 'score': 7.72}, {'connected_gene': 'SLK', 'score': 3.56}, {'connected_gene': 'CFAP58', 'score': 3.53}, {'connected_gene': 'ITPRIP', 'score': 1.24}, {'connected_gene': 'GC10M104249', 'score': 0.44}, {'connected_gene': 'MIR4482', 'score': 0.44}]
chr10	GH10I104242	104242732	104244361	0.68	[{'connected_gene': 'GSTO2', 'score': 15.32}, {'connected_gene': 'MIR609', 'score': 10.98}, {'connected_gene': 'ITPRIP', 'score': 10.19}, {'connected_gene': 'GSTO1', 'score': 0.44}, {'connected_gene': 'GC10M104249', 'score': 0.44}]
chr10	GH10I104303	104303239	104309332	1.27	[{'connected_gene': 'GSTO2', 'score': 19.91}, {'connected_gene': 'CFAP58', 'score': 12.6}, {'connected_gene': 'CFAP58-AS1', 'score': 12.55}, {'connected_gene': 'ITPRIP', 'score': 12.46}, {'connected_gene': 'GSTO1', 'score': 6.21}, {'connected_gene': 'GC10P104302', 'score': 0.77}, {'connected_gene': 'ENSG00000270075', 'score': 0.44}]
chr10	GH10I104296	104296758	104302741	1.14	[{'connected_gene': 'GSTO2', 'score': 17.71}, {'connected_gene': 'CFAP58', 'score': 12.27}, {'connected_gene': 'CFAP58-AS1', 'score': 12.23}, {'connected_gene': 'ITPRIP', 'score': 11.85}, {'connected_gene': 'GSTO1', 'score': 7.29}, {'connected_gene': 'GC10P104302', 'score': 0.77}]
chr10	GH10I104279	104279186	104279564	0.38	[{'connected_gene': 'GSTO2', 'score': 40.56}, {'connected_gene': 'CFAP58', 'score': 12.18}, {'connected_gene': 'CFAP58-AS1', 'score': 12.15}, {'connected_gene': 'ITPRIP', 'score': 11.28}, {'connected_gene': 'GSTO1', 'score': 6.57}, {'connected_gene': 'GC10P104302', 'score': 0.34}]
chr10	GH10I104314	104314983	104315132	0.4	[{'connected_gene': 'PIR55256', 'score': 550.77}, {'connected_gene': 'ITPRIP', 'score': 12.46}, {'connected_gene': 'CFAP58', 'score': 11.9}, {'connected_gene': 'CFAP58-AS1', 'score': 11.84}, {'connected_gene': 'LOC101927472', 'score': 0.44}]
chr10	GH10I104302	104302954	104303235	0.58	[{'connected_gene': 'GC10P104302', 'score': 550.77}, {'connected_gene': 'CFAP58', 'score': 12.58}, {'connected_gene': 'CFAP58-AS1', 'score': 12.54}, {'connected_gene': 'ITPRIP', 'score': 11.35}, {'connected_gene': 'ENSG00000270075', 'score': 0.44}, {'connected_gene': 'GSTO2', 'score': 0.29}]
chr10	GH10I104309	104309482	104312021	0.86	[{'connected_gene': 'ENSG00000270075', 'score': 550.77}, {'connected_gene': 'GSTO2', 'score': 18.83}, {'connected_gene': 'ITPRIP', 'score': 12.93}, {'connected_gene': 'CFAP58', 'score': 12.47}, {'connected_gene': 'CFAP58-AS1', 'score': 12.42}, {'connected_gene': 'GC10P104302', 'score': 0.44}]