PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000511601	[[153857503, 153857561], [153864079, 153864707], [153874650, 153874712], [153875368, 153875471], [153881716, 153881802], [153881895, 153881996], [153883965, 153884036], [153884174, 153884282], [153886056, 153886127], [153889131, 153889249], [153893528, 153893693], [153895826, 153900838]]	[[153864209, 153864707], [153874650, 153874712], [153875368, 153875471], [153881716, 153881802], [153881895, 153881996], [153883965, 153884036], [153884174, 153884282], [153886056, 153886127], [153889131, 153889249], [153893528, 153893693], [153895826, 153897875]]
ENST00000260008	[[153864134, 153864707], [153874650, 153874712], [153875368, 153875471], [153881716, 153881802], [153881895, 153881996], [153883965, 153884036], [153884174, 153884282], [153886056, 153886127], [153889131, 153889249], [153893528, 153893693], [153895826, 153900848]]	[[153864209, 153864707], [153874650, 153874712], [153875368, 153875471], [153881716, 153881802], [153881895, 153881996], [153883965, 153884036], [153884174, 153884282], [153886056, 153886127], [153889131, 153889249], [153893528, 153893693], [153895826, 153897875]]
NM_033393	[[153864134, 153864707], [153874650, 153874712], [153875368, 153875471], [153881716, 153881802], [153881895, 153881996], [153883965, 153884036], [153884174, 153884282], [153886056, 153886127], [153889131, 153889249], [153893528, 153893693], [153895826, 153900848]]	[[153864209, 153864707], [153874650, 153874712], [153875368, 153875471], [153881716, 153881802], [153881895, 153881996], [153883965, 153884036], [153884174, 153884282], [153886056, 153886127], [153889131, 153889249], [153893528, 153893693], [153895826, 153897875]]

Promoter

Chrom	Start	End	Description
chr4	153857031	153857047	CAGE_peak_3_at_FHDC1_5end
chr4	153857468	153857520	CAGE_peak_1_at_FHDC1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I152953	152953898	152959507	1.4	[{'connected_gene': 'FHDC1', 'score': 22.39}, {'connected_gene': 'RNF175', 'score': 8.92}, {'connected_gene': 'ARFIP1', 'score': 7.71}, {'connected_gene': 'TRIM2', 'score': 1.38}, {'connected_gene': 'PIR52121', 'score': 0.44}, {'connected_gene': 'GC04P152944', 'score': 0.39}, {'connected_gene': 'GC04P152946', 'score': 0.39}, {'connected_gene': 'GC04P152943', 'score': 0.39}, {'connected_gene': 'GC04P152945', 'score': 0.39}]
chr4	GH04I152848	152848815	152851747	0.89	[{'connected_gene': 'FHDC1', 'score': 11.32}, {'connected_gene': 'GC04P152882', 'score': 0.29}, {'connected_gene': 'GC04M152803', 'score': 0.29}, {'connected_gene': 'ARFIP1', 'score': 0.19}]
chr4	GH04I153079	153079957	153080306	0.66	[{'connected_gene': 'FHDC1', 'score': 19.16}, {'connected_gene': 'TMEM131L', 'score': 2.63}, {'connected_gene': 'GC04P153071', 'score': 0.44}, {'connected_gene': 'GC04P153070', 'score': 0.44}, {'connected_gene': 'ENSG00000249022', 'score': 0.25}, {'connected_gene': 'TRIM2', 'score': 0.19}]
chr4	GH04I152979	152979612	152984818	0.83	[{'connected_gene': 'FHDC1', 'score': 11.57}, {'connected_gene': 'PIR52121', 'score': 0.37}, {'connected_gene': 'GC04P152944', 'score': 0.28}, {'connected_gene': 'GC04P152946', 'score': 0.28}, {'connected_gene': 'GC04P152945', 'score': 0.28}, {'connected_gene': 'GC04P152943', 'score': 0.28}, {'connected_gene': 'ENSG00000249022', 'score': 0.23}]
chr4	GH04I153062	153062553	153068480	1.23	[{'connected_gene': 'FHDC1', 'score': 10.52}, {'connected_gene': 'GC04P153072', 'score': 0.44}, {'connected_gene': 'ENSG00000249022', 'score': 0.29}]
chr4	GH04I153000	152999492	152999653	0.58	[{'connected_gene': 'FHDC1', 'score': 10.66}, {'connected_gene': 'ENSG00000249022', 'score': 0.29}, {'connected_gene': 'PIR52121', 'score': 0.28}, {'connected_gene': 'GC04P152944', 'score': 0.22}, {'connected_gene': 'GC04P152946', 'score': 0.22}, {'connected_gene': 'GC04P152945', 'score': 0.22}, {'connected_gene': 'GC04P152943', 'score': 0.22}]
chr4	GH04I152994	152994723	152999125	0.85	[{'connected_gene': 'FHDC1', 'score': 10.88}, {'connected_gene': 'PIR52121', 'score': 0.29}, {'connected_gene': 'ENSG00000249022', 'score': 0.28}, {'connected_gene': 'GC04P152944', 'score': 0.23}, {'connected_gene': 'GC04P152946', 'score': 0.23}, {'connected_gene': 'GC04P152945', 'score': 0.23}, {'connected_gene': 'GC04P152943', 'score': 0.23}]
chr4	GH04I152989	152989449	152989598	0.4	[{'connected_gene': 'FHDC1', 'score': 11.56}, {'connected_gene': 'PIR52121', 'score': 0.31}, {'connected_gene': 'ENSG00000249022', 'score': 0.26}, {'connected_gene': 'GC04P152944', 'score': 0.25}, {'connected_gene': 'GC04P152946', 'score': 0.25}, {'connected_gene': 'GC04P152945', 'score': 0.25}, {'connected_gene': 'GC04P152943', 'score': 0.25}]
chr4	GH04I152990	152990869	152991038	0.88	[{'connected_gene': 'FHDC1', 'score': 11.56}, {'connected_gene': 'PIR52121', 'score': 0.31}, {'connected_gene': 'ENSG00000249022', 'score': 0.26}, {'connected_gene': 'GC04P152944', 'score': 0.25}, {'connected_gene': 'GC04P152946', 'score': 0.25}, {'connected_gene': 'GC04P152945', 'score': 0.25}, {'connected_gene': 'GC04P152943', 'score': 0.25}]
chr4	GH04I152999	152999849	152999998	0.4	[{'connected_gene': 'FHDC1', 'score': 10.66}, {'connected_gene': 'ENSG00000249022', 'score': 0.29}, {'connected_gene': 'PIR52121', 'score': 0.28}, {'connected_gene': 'GC04P152944', 'score': 0.22}, {'connected_gene': 'GC04P152946', 'score': 0.22}, {'connected_gene': 'GC04P152945', 'score': 0.22}, {'connected_gene': 'GC04P152943', 'score': 0.22}]
chr4	GH04I152969	152969688	152971694	0.74	[{'connected_gene': 'FHDC1', 'score': 11.13}, {'connected_gene': 'PIR52121', 'score': 0.44}, {'connected_gene': 'GC04P152944', 'score': 0.31}, {'connected_gene': 'GC04P152946', 'score': 0.31}, {'connected_gene': 'GC04P152945', 'score': 0.31}, {'connected_gene': 'GC04P152943', 'score': 0.31}, {'connected_gene': 'ENSG00000249022', 'score': 0.21}]
chr4	GH04I153003	153003557	153006507	0.43	[{'connected_gene': 'FHDC1', 'score': 10.39}, {'connected_gene': 'ENSG00000249022', 'score': 0.31}, {'connected_gene': 'PIR52121', 'score': 0.26}, {'connected_gene': 'GC04P152944', 'score': 0.21}, {'connected_gene': 'GC04P152946', 'score': 0.21}, {'connected_gene': 'GC04P152945', 'score': 0.21}, {'connected_gene': 'GC04P152943', 'score': 0.21}]
chr4	GH04I152991	152991267	152993056	0.84	[{'connected_gene': 'FHDC1', 'score': 11.55}, {'connected_gene': 'PIR52121', 'score': 0.31}, {'connected_gene': 'ENSG00000249022', 'score': 0.26}, {'connected_gene': 'GC04P152944', 'score': 0.25}, {'connected_gene': 'GC04P152946', 'score': 0.25}, {'connected_gene': 'GC04P152945', 'score': 0.25}, {'connected_gene': 'GC04P152943', 'score': 0.25}]
chr4	GH04I153038	153038889	153039038	0.79	[{'connected_gene': 'FHDC1', 'score': 10.66}, {'connected_gene': 'ENSG00000249022', 'score': 0.77}, {'connected_gene': 'GC04P153072', 'score': 0.29}, {'connected_gene': 'GC04P152943', 'score': 0.15}]
chr4	GH04I152968	152968949	152969098	0.63	[{'connected_gene': 'FHDC1', 'score': 10.91}, {'connected_gene': 'PIR52121', 'score': 0.44}, {'connected_gene': 'GC04P152944', 'score': 0.31}, {'connected_gene': 'GC04P152946', 'score': 0.31}, {'connected_gene': 'GC04P152945', 'score': 0.31}, {'connected_gene': 'GC04P152943', 'score': 0.31}, {'connected_gene': 'ENSG00000249022', 'score': 0.2}]
chr4	GH04I152972	152972191	152974590	1.07	[{'connected_gene': 'FHDC1', 'score': 11.46}, {'connected_gene': 'PIR52121', 'score': 0.39}, {'connected_gene': 'GC04P152944', 'score': 0.31}, {'connected_gene': 'GC04P152946', 'score': 0.31}, {'connected_gene': 'GC04P152945', 'score': 0.31}, {'connected_gene': 'GC04P152943', 'score': 0.31}, {'connected_gene': 'ENSG00000249022', 'score': 0.21}]
chr4	GH04I153142	153142549	153145341	1.32	[{'connected_gene': 'MND1', 'score': 10.7}, {'connected_gene': 'FHDC1', 'score': 10.27}, {'connected_gene': 'RNF175', 'score': 9.56}, {'connected_gene': 'TRIM2', 'score': 9.16}, {'connected_gene': 'GC04P153071', 'score': 0.19}, {'connected_gene': 'GC04P153070', 'score': 0.19}]
chr4	GH04I152939	152939801	152940000	0.38	[{'connected_gene': 'LOC729870', 'score': 550.77}, {'connected_gene': 'GC04P152943', 'score': 0.77}, {'connected_gene': 'FHDC1', 'score': 0.31}]
chr4	GH04I152938	152938989	152939035	0.31	[{'connected_gene': 'LOC729870', 'score': 550.77}, {'connected_gene': 'ARFIP1', 'score': 36.36}, {'connected_gene': 'GC04P152943', 'score': 0.77}, {'connected_gene': 'FHDC1', 'score': 0.31}]
chr4	GH04I152934	152934766	152938834	1.86	[{'connected_gene': 'LOC729870', 'score': 550.77}, {'connected_gene': 'ARFIP1', 'score': 29.39}, {'connected_gene': 'MIR4453HG', 'score': 10.48}, {'connected_gene': 'TRIM2', 'score': 3.07}, {'connected_gene': 'FHDC1', 'score': 3.0}, {'connected_gene': 'FAM192BP', 'score': 0.44}]
chr4	GH04I152949	152949610	152952398	0.96	[{'connected_gene': 'ARFIP1', 'score': 20.46}, {'connected_gene': 'GC04P152944', 'score': 0.44}, {'connected_gene': 'GC04P152946', 'score': 0.44}, {'connected_gene': 'GC04P152945', 'score': 0.44}, {'connected_gene': 'GC04P152943', 'score': 0.44}, {'connected_gene': 'PIR52121', 'score': 0.39}, {'connected_gene': 'FHDC1', 'score': 0.28}]
chr4	GH04I152892	152892243	152893852	0.2	[{'connected_gene': 'ARFIP1', 'score': 32.1}, {'connected_gene': 'GC04M152863', 'score': 0.44}, {'connected_gene': 'GC04P152882', 'score': 0.39}, {'connected_gene': 'FHDC1', 'score': 0.37}]
chr4	GH04I153210	153210172	153213589	0.57	[{'connected_gene': 'TRIM2', 'score': 31.25}, {'connected_gene': 'RNU6-1196P', 'score': 11.28}, {'connected_gene': 'ENSG00000201786', 'score': 11.27}, {'connected_gene': 'FHDC1', 'score': 9.69}, {'connected_gene': 'GC04M153170', 'score': 0.37}, {'connected_gene': 'LOC105377496', 'score': 0.28}]
chr4	GH04I153216	153216065	153217852	0.31	[{'connected_gene': 'TRIM2', 'score': 33.39}, {'connected_gene': 'RNU6-1196P', 'score': 11.22}, {'connected_gene': 'ENSG00000201786', 'score': 11.2}, {'connected_gene': 'FHDC1', 'score': 9.5}, {'connected_gene': 'GC04M153170', 'score': 0.34}, {'connected_gene': 'LOC105377496', 'score': 0.29}]
chr4	GH04I152926	152926390	152927698	0.31	[{'connected_gene': 'FAM192BP', 'score': 550.77}, {'connected_gene': 'FHDC1', 'score': 0.37}]
chr4	GH04I152924	152924669	152924982	0.2	[{'connected_gene': 'FAM192BP', 'score': 0.77}, {'connected_gene': 'FHDC1', 'score': 0.39}]
chr4	GH04I152010	152010173	152012084	0.73	[{'connected_gene': 'LINC02273', 'score': 6.93}, {'connected_gene': 'ENSG00000249818', 'score': 6.41}, {'connected_gene': 'FHDC1', 'score': 5.77}, {'connected_gene': 'GC04P152008', 'score': 0.77}, {'connected_gene': 'PIR40553', 'score': 0.34}]
chr4	GH04I152961	152961144	152961640	0.43	[{'connected_gene': 'PIR52121', 'score': 550.77}, {'connected_gene': 'FHDC1', 'score': 11.58}, {'connected_gene': 'MIR4453HG', 'score': 4.75}, {'connected_gene': 'GC04P152944', 'score': 0.37}, {'connected_gene': 'GC04P152946', 'score': 0.37}, {'connected_gene': 'GC04P152945', 'score': 0.37}, {'connected_gene': 'GC04P152943', 'score': 0.37}]
chr4	GH04I152942	152942812	152945309	1.08	[{'connected_gene': 'GC04P152944', 'score': 550.77}, {'connected_gene': 'GC04P152946', 'score': 550.77}, {'connected_gene': 'GC04P152945', 'score': 550.77}, {'connected_gene': 'GC04P152943', 'score': 550.77}, {'connected_gene': 'FHDC1', 'score': 550.29}, {'connected_gene': 'ARFIP1', 'score': 35.97}, {'connected_gene': 'PIR52121', 'score': 0.37}]
chr4	GH04I152894	152894749	152894898	0.31	[{'connected_gene': 'GC04P152882', 'score': 0.39}, {'connected_gene': 'GC04M152863', 'score': 0.39}, {'connected_gene': 'FHDC1', 'score': 0.37}, {'connected_gene': 'ARFIP1', 'score': 0.14}]
chr4	GH04I152962	152961749	152961898	0.64	[{'connected_gene': 'PIR52121', 'score': 550.77}, {'connected_gene': 'FHDC1', 'score': 11.57}, {'connected_gene': 'GC04P152944', 'score': 0.37}, {'connected_gene': 'GC04P152946', 'score': 0.37}, {'connected_gene': 'GC04P152945', 'score': 0.37}, {'connected_gene': 'GC04P152943', 'score': 0.37}]
chr4	GH04I152945	152945657	152947452	0.72	[{'connected_gene': 'GC04P152944', 'score': 0.77}, {'connected_gene': 'GC04P152946', 'score': 0.77}, {'connected_gene': 'GC04P152945', 'score': 0.77}, {'connected_gene': 'GC04P152943', 'score': 0.77}, {'connected_gene': 'PIR52121', 'score': 0.37}, {'connected_gene': 'FHDC1', 'score': 0.29}]