PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000358545	[[43136871, 43137099], [43140756, 43140898], [43145715, 43145874], [43155261, 43155429], [43174887, 43174933], [43175018, 43175117], [43180632, 43181310]]	[[43155261, 43155429], [43174887, 43174933], [43175018, 43175117], [43180632, 43181054]]
ENST00000405262	[[43140752, 43140898], [43145715, 43145874], [43155261, 43155429], [43174887, 43174933], [43175018, 43175117], [43180632, 43182149]]	[[43155261, 43155429], [43174887, 43174933], [43175018, 43175117], [43180632, 43181054]]
ENST00000239849	[[43148288, 43148658], [43155261, 43155429], [43174887, 43174933], [43175018, 43175117], [43180632, 43182144]]	[[43148439, 43148658], [43155261, 43155429], [43174887, 43174933], [43175018, 43175117], [43180632, 43181054]]
ENST00000398795	[[43148290, 43148658], [43155261, 43155429], [43174887, 43174933], [43175018, 43175117], [43180632, 43182149]]	[[43155261, 43155429], [43174887, 43174933], [43175018, 43175117], [43180632, 43181054]]
ENST00000544862	[[43148359, 43148388], [43148604, 43148658], [43155261, 43155429], [43174887, 43174933], [43175018, 43175117], [43180632, 43181054]]	[[43155261, 43155429], [43174887, 43174933], [43175018, 43175117], [43180632, 43181054]]
NM_033012	[[43136871, 43137099], [43140756, 43140898], [43145715, 43145874], [43155261, 43155429], [43174887, 43174933], [43175018, 43175117], [43180632, 43182149]]	[[43155261, 43155429], [43174887, 43174933], [43175018, 43175117], [43180632, 43181054]]
NM_003701	[[43148290, 43148658], [43155261, 43155429], [43174887, 43174933], [43175018, 43175117], [43180632, 43182149]]	[[43148439, 43148658], [43155261, 43155429], [43174887, 43174933], [43175018, 43175117], [43180632, 43181054]]

Promoter

Chrom	Start	End	Description
chr13	43148281	43148293	CAGE_peak_1_at_TNFSF11_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I042387	42387029	42389379	0.38	[{'connected_gene': 'TNFSF11', 'score': 10.2}, {'connected_gene': 'GC13M042401', 'score': 0.39}, {'connected_gene': 'FABP3P2', 'score': 0.37}, {'connected_gene': 'LINC02341', 'score': 0.25}]
chr13	GH13I042396	42396489	42396774	0.85	[{'connected_gene': 'TNFSF11', 'score': 9.19}, {'connected_gene': 'DGKH', 'score': 2.62}, {'connected_gene': 'AKAP11', 'score': 2.49}, {'connected_gene': 'GC13M042401', 'score': 0.44}, {'connected_gene': 'FABP3P2', 'score': 0.31}, {'connected_gene': 'LINC02341', 'score': 0.22}]
chr13	GH13I042377	42377227	42379296	1.02	[{'connected_gene': 'TNFSF11', 'score': 9.97}, {'connected_gene': 'AKAP11', 'score': 4.77}, {'connected_gene': 'FABP3P2', 'score': 0.44}, {'connected_gene': 'GC13M042401', 'score': 0.34}, {'connected_gene': 'LINC02341', 'score': 0.28}]
chr13	GH13I042391	42391750	42396200	1.39	[{'connected_gene': 'TNFSF11', 'score': 9.92}, {'connected_gene': 'AKAP11', 'score': 6.29}, {'connected_gene': 'DGKH', 'score': 2.02}, {'connected_gene': 'GC13M042401', 'score': 0.44}, {'connected_gene': 'FABP3P2', 'score': 0.34}, {'connected_gene': 'LINC02341', 'score': 0.23}]
chr13	GH13I042354	42354097	42356676	1.25	[{'connected_gene': 'TNFSF11', 'score': 16.61}, {'connected_gene': 'AKAP11', 'score': 15.34}, {'connected_gene': 'DGKH', 'score': 1.9}, {'connected_gene': 'VWA8', 'score': 1.24}, {'connected_gene': 'FABP3P2', 'score': 0.39}, {'connected_gene': 'LINC02341', 'score': 0.37}]
chr13	GH13I042597	42597345	42597364	0.22	[{'connected_gene': 'TNFSF11', 'score': 2.26}, {'connected_gene': 'AKAP11', 'score': 1.29}, {'connected_gene': 'DGKH', 'score': 1.27}, {'connected_gene': 'GC13P042584', 'score': 0.39}, {'connected_gene': 'GC13M042780', 'score': 0.09}]
chr13	GH13I042524	42524264	42525986	0.94	[{'connected_gene': 'TNFSF11', 'score': 16.93}, {'connected_gene': 'AKAP11', 'score': 6.17}, {'connected_gene': 'DGKH', 'score': 1.43}, {'connected_gene': 'GC13M042451', 'score': 0.21}]
chr13	GH13I042411	42411256	42414720	0.76	[{'connected_gene': 'TNFSF11', 'score': 14.16}, {'connected_gene': 'AKAP11', 'score': 9.07}, {'connected_gene': 'GC13M042417', 'score': 0.44}, {'connected_gene': 'GC13M042401', 'score': 0.39}, {'connected_gene': 'LINC02341', 'score': 0.19}]
chr13	GH13I042405	42405330	42406885	1.23	[{'connected_gene': 'TNFSF11', 'score': 17.63}, {'connected_gene': 'AKAP11', 'score': 3.11}, {'connected_gene': 'GC13M042401', 'score': 0.77}, {'connected_gene': 'GC13M042417', 'score': 0.39}, {'connected_gene': 'LINC02341', 'score': 0.2}]
chr13	GH13I042548	42548023	42550199	1.29	[{'connected_gene': 'TNFSF11', 'score': 6.79}, {'connected_gene': 'AKAP11', 'score': 3.39}, {'connected_gene': 'GC13M042451', 'score': 0.17}]
chr13	GH13I042486	42486124	42488195	0.91	[{'connected_gene': 'TNFSF11', 'score': 6.31}, {'connected_gene': 'AKAP11', 'score': 5.02}, {'connected_gene': 'GC13M042451', 'score': 0.31}]
chr13	GH13I042591	42591742	42595514	1.36	[{'connected_gene': 'TNFSF11', 'score': 11.0}, {'connected_gene': 'GC13P042584', 'score': 0.44}, {'connected_gene': 'GC13M042780', 'score': 0.09}]
chr13	GH13I042573	42573836	42575600	1.62	[{'connected_gene': 'TNFSF11', 'score': 550.39}, {'connected_gene': 'GC13P042584', 'score': 0.44}]
chr13	GH13I042532	42532601	42533000	0.87	[{'connected_gene': 'TNFSF11', 'score': 0.31}, {'connected_gene': 'GC13M042451', 'score': 0.19}]
chr13	GH13I042494	42494975	42496074	0.68	[{'connected_gene': 'TNFSF11', 'score': 10.65}, {'connected_gene': 'GC13M042451', 'score': 0.29}]
chr13	GH13I042567	42567917	42568689	0.31	[{'connected_gene': 'TNFSF11', 'score': 0.44}, {'connected_gene': 'GC13P042584', 'score': 0.37}]
chr13	GH13I042553	42553385	42554367	0.57	[{'connected_gene': 'TNFSF11', 'score': 0.44}, {'connected_gene': 'GC13M042451', 'score': 0.16}]
chr13	GH13I042367	42367941	42368009	0.48	[{'connected_gene': 'FABP3P2', 'score': 550.77}, {'connected_gene': 'AKAP11', 'score': 2.24}, {'connected_gene': 'TNFSF11', 'score': 2.13}, {'connected_gene': 'LINC02341', 'score': 0.31}]
chr13	GH13I042806	42806928	42809385	0.56	[{'connected_gene': 'FAM216B', 'score': 11.76}, {'connected_gene': 'TNFSF11', 'score': 9.53}, {'connected_gene': 'LINC01050', 'score': 6.17}]
chr13	GH13I042379	42379985	42381354	1.23	[{'connected_gene': 'AKAP11', 'score': 6.49}, {'connected_gene': 'TNFSF11', 'score': 5.27}, {'connected_gene': 'DGKH', 'score': 1.77}, {'connected_gene': 'FABP3P2', 'score': 0.39}, {'connected_gene': 'GC13M042401', 'score': 0.34}, {'connected_gene': 'LINC02341', 'score': 0.26}]
chr13	GH13I042497	42497254	42498448	0.74	[{'connected_gene': 'AKAP11', 'score': 8.08}, {'connected_gene': 'GC13M042451', 'score': 0.28}, {'connected_gene': 'TNFSF11', 'score': 0.21}]
chr13	GH13I042270	42270583	42276969	2.54	[{'connected_gene': 'AKAP11', 'score': 569.51}, {'connected_gene': 'NAA16', 'score': 17.69}, {'connected_gene': 'TNFSF11', 'score': 3.47}, {'connected_gene': 'DGKH', 'score': 1.35}, {'connected_gene': 'GC13M042285', 'score': 0.22}]
chr13	GH13I042401	42401985	42403594	0.63	[{'connected_gene': 'GC13M042401', 'score': 550.77}, {'connected_gene': 'TNFSF11', 'score': 10.47}, {'connected_gene': 'AKAP11', 'score': 4.42}, {'connected_gene': 'GC13M042417', 'score': 0.37}, {'connected_gene': 'LINC02341', 'score': 0.21}]
chr13	GH13I043043	43043135	43046399	1.23	[{'connected_gene': 'GC13M043046', 'score': 550.77}, {'connected_gene': 'GC13P043043', 'score': 550.77}, {'connected_gene': 'DNAJC15', 'score': 43.98}, {'connected_gene': 'EPSTI1', 'score': 16.35}, {'connected_gene': 'TNFSF11', 'score': 1.37}]