PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000297313	[[54764367, 54764624], [54791817, 54792162], [54852135, 54852284], [54859224, 54859308], [54866635, 54866870], [54870829, 54871863]]	[[54764459, 54764624], [54791817, 54792162], [54852135, 54852284], [54859224, 54859308], [54866635, 54866870], [54870829, 54871018]]
ENST00000523280	[[54764459, 54764624], [54866635, 54866870], [54870829, 54871863]]	[[54764459, 54764624], [54866635, 54866683]]
ENST00000517659	[[54764459, 54764624], [54859224, 54859308], [54866635, 54866870], [54870829, 54871863]]	[[54764459, 54764624], [54859224, 54859236]]
ENST00000344277	[[54764459, 54764624], [54852135, 54852284], [54859224, 54859308], [54866635, 54866870], [54870829, 54871863]]	[[54764459, 54764624], [54852135, 54852284], [54859224, 54859308], [54866635, 54866870], [54870829, 54871018]]
ENST00000518286	[[54792443, 54792598], [54852135, 54852284], [54859224, 54859308], [54866635, 54866702]]	None
ENST00000523414	[[54792559, 54792846], [54852135, 54852284], [54859224, 54859308], [54866635, 54866783]]	None
ENST00000522225	[[54793431, 54793644], [54859224, 54859308], [54866635, 54866870], [54870829, 54871856]]	[[54866690, 54866870], [54870829, 54871018]]
ENST00000276500	[[54793453, 54793644], [54852135, 54852284], [54859224, 54859308], [54866635, 54866870], [54870829, 54871834]]	[[54793575, 54793644], [54852135, 54852284], [54859224, 54859308], [54866635, 54866870], [54870829, 54871018]]
ENST00000523064	[[54793460, 54793644], [54826056, 54826482]]	None
ENST00000517405	[[54857884, 54857930], [54859224, 54859308], [54866635, 54866870], [54870829, 54871257]]	None
NM_001286674	[[54764367, 54764624], [54866635, 54866870], [54870829, 54871864]]	[[54764589, 54764624], [54866635, 54866870], [54870829, 54871018]]
NM_001286675	[[54764367, 54764624], [54859224, 54859308], [54866635, 54866870], [54870829, 54871864]]	[[54764589, 54764624], [54859224, 54859308], [54866635, 54866870], [54870829, 54871018]]
NM_001286673	[[54764367, 54764624], [54852135, 54852284], [54859224, 54859308], [54866635, 54866870], [54870829, 54871864]]	[[54764459, 54764624], [54852135, 54852284], [54859224, 54859308], [54866635, 54866870], [54870829, 54871018]]
NM_170587	[[54764367, 54764624], [54791817, 54792162], [54852135, 54852284], [54859224, 54859308], [54866635, 54866870], [54870829, 54871864]]	[[54764459, 54764624], [54791817, 54792162], [54852135, 54852284], [54859224, 54859308], [54866635, 54866870], [54870829, 54871018]]
NR_104578	[[54793431, 54793644], [54826056, 54826482]]	None
NR_104579	[[54793431, 54793644], [54859224, 54859308], [54866635, 54866870], [54870829, 54871864]]	None
NM_003702	[[54793431, 54793644], [54852135, 54852284], [54859224, 54859308], [54866635, 54866870], [54870829, 54871864]]	[[54793575, 54793644], [54852135, 54852284], [54859224, 54859308], [54866635, 54866870], [54870829, 54871018]]

Promoter

Chrom	Start	End	Description
chr8	54764346	54764356	CAGE_peak_18_at_RGS20_5end
chr8	54792564	54792638	CAGE_peak_2_at_RGS20_5end
chr8	54792661	54792674	CAGE_peak_9_at_RGS20_5end
chr8	54793425	54793437	CAGE_peak_6_at_RGS20_5end
chr8	54793456	54793478	CAGE_peak_4_at_RGS20_5end
chr8	54793480	54793503	CAGE_peak_5_at_RGS20_5end
chr8	54793565	54793588	CAGE_peak_1_at_RGS20_5end
chr8	54793591	54793617	CAGE_peak_3_at_RGS20_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I054143	54143065	54144516	0.2	[{'connected_gene': 'RGS20', 'score': 10.01}, {'connected_gene': 'ATP6V1H', 'score': 9.96}, {'connected_gene': 'TCEA1', 'score': 6.28}, {'connected_gene': 'ENSG00000253369', 'score': 4.19}, {'connected_gene': 'MRPL15', 'score': 0.44}, {'connected_gene': 'RNU6ATAC32P', 'score': 0.44}]
chr8	GH08I053851	53851746	53851805	0.84	[{'connected_gene': 'RGS20', 'score': 550.77}, {'connected_gene': 'ATP6V1H', 'score': 0.44}]
chr8	GH08I053747	53747324	53747551	0.22	[{'connected_gene': 'RGS20', 'score': 10.49}, {'connected_gene': 'GC08M053742', 'score': 0.77}, {'connected_gene': 'GC08M053723', 'score': 0.37}, {'connected_gene': 'ATP6V1H', 'score': 0.15}]
chr8	GH08I053879	53879341	53887604	2.49	[{'connected_gene': 'RGS20', 'score': 550.29}, {'connected_gene': 'LOC100131254', 'score': 29.05}, {'connected_gene': 'RPS27AP13', 'score': 0.77}, {'connected_gene': 'ENSG00000272457', 'score': 0.44}]
chr8	GH08I053807	53807497	53808101	0.49	[{'connected_gene': 'ATP6V1H', 'score': 22.38}, {'connected_gene': 'RGS20', 'score': 10.74}, {'connected_gene': 'TCEA1', 'score': 10.43}, {'connected_gene': 'GC08P053812', 'score': 0.77}, {'connected_gene': 'GC08P053789', 'score': 0.37}]
chr8	GH08I054011	54011321	54011470	0.49	[{'connected_gene': 'ATP6V1H', 'score': 11.25}, {'connected_gene': 'RGS20', 'score': 10.8}, {'connected_gene': 'MRPL15', 'score': 10.77}, {'connected_gene': 'RNU6-1331P', 'score': 10.54}, {'connected_gene': 'GC08M054012', 'score': 0.77}, {'connected_gene': 'TCEA1', 'score': 0.39}, {'connected_gene': 'GC08P053986', 'score': 0.31}]
chr8	GH08I053815	53815481	53815590	0.49	[{'connected_gene': 'ATP6V1H', 'score': 11.43}, {'connected_gene': 'RGS20', 'score': 11.02}, {'connected_gene': 'GC08P053812', 'score': 0.77}, {'connected_gene': 'GC08P053833', 'score': 0.37}]
chr8	GH08I053867	53867572	53868442	0.31	[{'connected_gene': 'ATP6V1H', 'score': 12.13}, {'connected_gene': 'ENSG00000272457', 'score': 0.44}, {'connected_gene': 'RGS20', 'score': 0.37}]
chr8	GH08I053904	53904389	53907346	0.89	[{'connected_gene': 'ATP6V1H', 'score': 10.59}, {'connected_gene': 'GC08P053915', 'score': 0.44}, {'connected_gene': 'RPS27AP13', 'score': 0.37}, {'connected_gene': 'RGS20', 'score': 0.23}]
chr8	GH08I053953	53953697	53954795	0.31	[{'connected_gene': 'GC08P053957', 'score': 0.77}, {'connected_gene': 'GC08P053923', 'score': 0.29}, {'connected_gene': 'RGS20', 'score': 0.15}]
chr8	GH08I053942	53942996	53947025	1.29	[{'connected_gene': 'ENSG00000253369', 'score': 4.64}, {'connected_gene': 'GC08P053957', 'score': 0.39}, {'connected_gene': 'GC08P053923', 'score': 0.34}, {'connected_gene': 'RGS20', 'score': 0.16}]
chr8	GH08I053956	53956881	53957971	0.31	[{'connected_gene': 'GC08P053957', 'score': 550.77}, {'connected_gene': 'GC08P053923', 'score': 0.29}, {'connected_gene': 'RGS20', 'score': 0.14}]
chr8	GH08I053938	53938941	53939090	0.2	[{'connected_gene': 'GC08P053957', 'score': 0.37}, {'connected_gene': 'GC08P053923', 'score': 0.37}, {'connected_gene': 'RGS20', 'score': 0.17}]
chr8	GH08I054105	54105690	54107346	1.03	[{'connected_gene': 'PIR33175', 'score': 550.77}, {'connected_gene': 'MRPL15', 'score': 13.16}, {'connected_gene': 'TCEA1', 'score': 11.02}, {'connected_gene': 'RGS20', 'score': 10.02}, {'connected_gene': 'ATP6V1H', 'score': 1.4}, {'connected_gene': 'LYPLA1', 'score': 0.77}]
chr8	GH08I053876	53876701	53876814	0.31	[{'connected_gene': 'ENSG00000272457', 'score': 550.77}, {'connected_gene': 'RPS27AP13', 'score': 0.39}, {'connected_gene': 'RGS20', 'score': 0.34}]
chr8	GH08I053877	53877145	53878246	1.02	[{'connected_gene': 'ENSG00000272457', 'score': 550.77}, {'connected_gene': 'RPS27AP13', 'score': 0.44}, {'connected_gene': 'RGS20', 'score': 0.31}]
chr8	GH08I053880	53879190	53879230	0.38	[{'connected_gene': 'ENSG00000272457', 'score': 0.77}, {'connected_gene': 'RPS27AP13', 'score': 0.44}, {'connected_gene': 'RGS20', 'score': 0.31}]