PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000181839	[[39989635, 39991451], [40027197, 40027857], [40037092, 40037263], [40038959, 40039099], [40041459, 40041630], [40085434, 40085624], [40087419, 40087476], [40102424, 40102526], [40102621, 40102699], [40117603, 40117720], [40118318, 40118450], [40127724, 40127930], [40132383, 40132836], [40133728, 40136733]]	[[39990240, 39991451], [40027197, 40027857], [40037092, 40037263], [40038959, 40039099], [40041459, 40041630], [40085434, 40085624], [40087419, 40087476], [40102424, 40102526], [40102621, 40102699], [40117603, 40117720], [40118318, 40118450], [40127724, 40127930], [40132383, 40132836], [40133728, 40134579]]
ENST00000340829	[[39990108, 39991451], [40027197, 40027857], [40037092, 40037263], [40038959, 40039099], [40041459, 40041630], [40085434, 40085624], [40087419, 40087476], [40102424, 40102526], [40102621, 40102699], [40117603, 40117720], [40118318, 40118450], [40127724, 40127930], [40132563, 40132836], [40133728, 40135154]]	[[39990240, 39991451], [40027197, 40027857], [40037092, 40037263], [40038959, 40039099], [40041459, 40041630], [40085434, 40085624], [40087419, 40087476], [40102424, 40102526], [40102621, 40102699], [40117603, 40117720], [40118318, 40118450], [40127724, 40127930], [40132563, 40132836], [40133728, 40134579]]
ENST00000484589	[[40027434, 40027857], [40037092, 40037263], [40038959, 40039099], [40041459, 40041630], [40085434, 40085624], [40087419, 40087476], [40102424, 40102526], [40102621, 40102699], [40108908, 40109687]]	None
ENST00000478563	[[40118012, 40118450], [40127724, 40127930], [40132563, 40132619]]	None
ENST00000465643	[[40131845, 40132836], [40133728, 40135131]]	None
NM_031267	[[39989958, 39991451], [40027197, 40027857], [40037092, 40037263], [40038959, 40039099], [40041459, 40041630], [40085434, 40085624], [40087419, 40087476], [40102424, 40102526], [40102621, 40102699], [40117603, 40117720], [40118318, 40118450], [40127724, 40127930], [40132563, 40132836], [40133728, 40136733]]	[[39990240, 39991451], [40027197, 40027857], [40037092, 40037263], [40038959, 40039099], [40041459, 40041630], [40085434, 40085624], [40087419, 40087476], [40102424, 40102526], [40102621, 40102699], [40117603, 40117720], [40118318, 40118450], [40127724, 40127930], [40132563, 40132836], [40133728, 40134579]]
NM_003718	[[39989958, 39991451], [40027197, 40027857], [40037092, 40037263], [40038959, 40039099], [40041459, 40041630], [40085434, 40085624], [40087419, 40087476], [40102424, 40102526], [40102621, 40102699], [40117603, 40117720], [40118318, 40118450], [40127724, 40127930], [40132383, 40132836], [40133728, 40136733]]	[[39990240, 39991451], [40027197, 40027857], [40037092, 40037263], [40038959, 40039099], [40041459, 40041630], [40085434, 40085624], [40087419, 40087476], [40102424, 40102526], [40102621, 40102699], [40117603, 40117720], [40118318, 40118450], [40127724, 40127930], [40132383, 40132836], [40133728, 40134579]]

Promoter

Chrom	Start	End	Description
chr7	39989218	39989299	CAGE_peak_4_at_CDK13_5end
chr7	39989360	39989418	CAGE_peak_2_at_CDK13_5end
chr7	39989611	39989716	CAGE_peak_3_at_CDK13_5end
chr7	39989788	39989876	CAGE_peak_1_at_CDK13_5end
chr7	39989910	39989924	CAGE_peak_7_at_CDK13_5end
chr7	39989926	39989939	CAGE_peak_9_at_CDK13_5end
chr7	39989946	39989977	CAGE_peak_6_at_CDK13_5end
chr7	39990840	39990869	CAGE_peak_16_at_CDK13_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I039984	39984601	39986000	0.51	[{'connected_gene': 'CDK13', 'score': 12.72}, {'connected_gene': 'SUGCT', 'score': 4.82}, {'connected_gene': 'PIR43898', 'score': 0.28}, {'connected_gene': 'GC07M039837', 'score': 0.16}]
chr7	GH07I040012	40012747	40013621	0.38	[{'connected_gene': 'CDK13', 'score': 12.87}, {'connected_gene': 'LINC00265', 'score': 6.84}, {'connected_gene': 'PIR43898', 'score': 0.21}, {'connected_gene': 'GC07M039837', 'score': 0.2}]
chr7	GH07I039977	39977472	39979133	0.92	[{'connected_gene': 'CDK13', 'score': 12.23}, {'connected_gene': 'LINC00265', 'score': 6.85}, {'connected_gene': 'PIR43898', 'score': 0.31}, {'connected_gene': 'GC07M039837', 'score': 0.15}]
chr7	GH07I039591	39591984	39593864	1.34	[{'connected_gene': 'CDK13', 'score': 14.03}, {'connected_gene': 'MPLKIP', 'score': 12.37}, {'connected_gene': 'LINC00265', 'score': 9.78}, {'connected_gene': 'RALA', 'score': 8.87}, {'connected_gene': 'GC07P039582', 'score': 0.39}, {'connected_gene': 'GC07P039609', 'score': 0.37}, {'connected_gene': 'YAE1D1', 'score': 0.31}]
chr7	GH07I039893	39893622	39893771	0.46	[{'connected_gene': 'CDK13', 'score': 11.73}, {'connected_gene': 'RN7SL496P', 'score': 0.44}, {'connected_gene': 'GC07P039903', 'score': 0.44}, {'connected_gene': 'ENSG00000259826', 'score': 0.22}, {'connected_gene': 'LOC101928688', 'score': 0.18}, {'connected_gene': 'GC07M039837', 'score': 0.09}]
chr7	GH07I039892	39892741	39893159	0.43	[{'connected_gene': 'CDK13', 'score': 11.73}, {'connected_gene': 'RN7SL496P', 'score': 0.77}, {'connected_gene': 'GC07P039903', 'score': 0.77}, {'connected_gene': 'ENSG00000259826', 'score': 0.22}, {'connected_gene': 'LOC101928688', 'score': 0.18}, {'connected_gene': 'GC07M039837', 'score': 0.09}]
chr7	GH07I039947	39947495	39954197	2.28	[{'connected_gene': 'CDK13', 'score': 561.42}, {'connected_gene': 'PIR43898', 'score': 550.77}, {'connected_gene': 'ENSG00000259826', 'score': 550.77}, {'connected_gene': 'CICP22', 'score': 11.25}, {'connected_gene': 'LINC00265', 'score': 4.5}, {'connected_gene': 'GC07M039837', 'score': 0.13}]
chr7	GH07I039183	39183561	39184812	0.49	[{'connected_gene': 'CDK13', 'score': 19.99}, {'connected_gene': 'CICP22', 'score': 15.31}, {'connected_gene': 'ENSG00000228554', 'score': 11.14}, {'connected_gene': 'MPLKIP', 'score': 9.86}, {'connected_gene': 'LINC00265', 'score': 9.82}, {'connected_gene': 'GC07P039163', 'score': 0.34}, {'connected_gene': 'GC07P039305', 'score': 0.13}, {'connected_gene': 'POU6F2', 'score': 0.08}]
chr7	GH07I040052	40052102	40052937	0.57	[{'connected_gene': 'CDK13', 'score': 12.19}, {'connected_gene': 'GC07M039837', 'score': 0.31}, {'connected_gene': 'PIR43898', 'score': 0.15}]
chr7	GH07I040008	40008187	40008801	0.49	[{'connected_gene': 'CDK13', 'score': 12.89}, {'connected_gene': 'PIR43898', 'score': 0.22}, {'connected_gene': 'GC07M039837', 'score': 0.19}]
chr7	GH07I039979	39979401	39979711	0.6	[{'connected_gene': 'CDK13', 'score': 11.56}, {'connected_gene': 'PIR43898', 'score': 0.31}, {'connected_gene': 'GC07M039837', 'score': 0.15}]
chr7	GH07I040015	40015726	40016329	0.59	[{'connected_gene': 'CDK13', 'score': 20.01}, {'connected_gene': 'GC07M039837', 'score': 0.21}, {'connected_gene': 'PIR43898', 'score': 0.2}]
chr7	GH07I040049	40049201	40049400	0.31	[{'connected_gene': 'CDK13', 'score': 12.19}, {'connected_gene': 'GC07M039837', 'score': 0.31}, {'connected_gene': 'PIR43898', 'score': 0.15}]
chr7	GH07I039985	39984201	39984400	0.2	[{'connected_gene': 'CDK13', 'score': 12.74}, {'connected_gene': 'PIR43898', 'score': 0.29}, {'connected_gene': 'GC07M039837', 'score': 0.16}]
chr7	GH07I039972	39972003	39972683	0.51	[{'connected_gene': 'SUGCT', 'score': 4.68}, {'connected_gene': 'PIR43898', 'score': 0.34}, {'connected_gene': 'CDK13', 'score': 0.34}, {'connected_gene': 'GC07M039837', 'score': 0.14}]
chr7	GH07I039565	39565514	39567409	2.04	[{'connected_gene': 'YAE1D1', 'score': 550.77}, {'connected_gene': 'LOC105375240', 'score': 550.77}, {'connected_gene': 'CDK13', 'score': 11.93}, {'connected_gene': 'MPLKIP', 'score': 11.16}, {'connected_gene': 'RALA', 'score': 10.88}, {'connected_gene': 'LINC00265', 'score': 5.66}, {'connected_gene': 'GC07M039569', 'score': 0.77}]
chr7	GH07I039719	39719542	39722172	1.03	[{'connected_gene': 'LINC00265', 'score': 22.44}, {'connected_gene': 'CDK13', 'score': 11.95}, {'connected_gene': 'MPLKIP', 'score': 11.18}, {'connected_gene': 'RALA', 'score': 10.95}, {'connected_gene': 'YAE1D1', 'score': 10.25}, {'connected_gene': 'LOC105375240', 'score': 10.25}, {'connected_gene': 'ENSG00000228554', 'score': 0.37}]
chr7	GH07I039732	39732280	39736111	2	[{'connected_gene': 'LINC00265', 'score': 580.7}, {'connected_gene': 'CDK13', 'score': 37.02}, {'connected_gene': 'CICP22', 'score': 24.26}, {'connected_gene': 'ENSG00000228554', 'score': 19.91}, {'connected_gene': 'RALA', 'score': 13.95}, {'connected_gene': 'YAE1D1', 'score': 11.31}, {'connected_gene': 'LOC105375240', 'score': 11.31}, {'connected_gene': 'MPLKIP', 'score': 9.88}, {'connected_gene': 'RNU6-719P', 'score': 0.29}]
chr7	GH07I039968	39968801	39970200	0.4	[{'connected_gene': 'LINC00265', 'score': 4.72}, {'connected_gene': 'PIR43898', 'score': 0.37}, {'connected_gene': 'CDK13', 'score': 0.37}, {'connected_gene': 'GC07M039837', 'score': 0.14}]
chr7	GH07I039753	39753787	39756026	0.76	[{'connected_gene': 'LINC00265', 'score': 16.67}, {'connected_gene': 'RALA', 'score': 10.69}, {'connected_gene': 'CICP22', 'score': 10.65}, {'connected_gene': 'YAE1D1', 'score': 10.61}, {'connected_gene': 'LOC105375240', 'score': 10.61}, {'connected_gene': 'CDK13', 'score': 10.42}, {'connected_gene': 'RNU6-719P', 'score': 0.39}]
chr7	GH07I040132	40132988	40135800	2.1	[{'connected_gene': 'MPLKIP', 'score': 578.85}, {'connected_gene': 'GC07P040132', 'score': 550.77}, {'connected_gene': 'SUGCT', 'score': 550.77}, {'connected_gene': 'CDK13', 'score': 67.56}, {'connected_gene': 'CICP22', 'score': 36.82}, {'connected_gene': 'ENSG00000228554', 'score': 28.94}, {'connected_gene': 'ENSG00000259826', 'score': 12.63}, {'connected_gene': 'LINC00265', 'score': 12.54}, {'connected_gene': 'LOC100101126', 'score': 11.74}, {'connected_gene': 'YAE1D1', 'score': 11.22}]
chr7	GH07I040095	40095402	40095551	0.75	[{'connected_gene': 'GC07P040095', 'score': 550.77}, {'connected_gene': 'GC07M040085', 'score': 0.44}, {'connected_gene': 'CDK13', 'score': 0.11}]
chr7	GH07I040089	40089909	40090571	0.36	[{'connected_gene': 'GC07M040085', 'score': 0.77}, {'connected_gene': 'GC07P040095', 'score': 0.44}, {'connected_gene': 'CDK13', 'score': 0.11}]