PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000322310	[[140083098, 140083230], [140083517, 140083717], [140084258, 140084822]]	[[140083178, 140083230], [140083517, 140083717], [140084258, 140084366]]
ENST00000459860	[[140083111, 140083717], [140084258, 140084822]]	None
ENST00000463511	[[140083150, 140083603], [140084258, 140084375]]	None
ENST00000464553	[[140083157, 140083230], [140083517, 140083603], [140084258, 140084822]]	None
NM_003731	[[140083053, 140083230], [140083517, 140083717], [140084258, 140084822]]	[[140083178, 140083230], [140083517, 140083717], [140084258, 140084366]]

Promoter

Chrom	Start	End	Description
chr9	140083083	140083095	CAGE_peak_5_at_SSNA1_5end
chr9	140083099	140083145	CAGE_peak_1_at_SSNA1_5end
chr9	140083148	140083187	CAGE_peak_2_at_SSNA1_5end
chr9	140083196	140083209	CAGE_peak_3_at_SSNA1_5end
chr9	140083539	140083565	CAGE_peak_4_at_SSNA1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I137221	137221486	137232704	2.85	[{'connected_gene': 'RNF224', 'score': 556.63}, {'connected_gene': 'SLC34A3', 'score': 555.96}, {'connected_gene': 'EHMT1', 'score': 17.44}, {'connected_gene': 'LOC651337', 'score': 15.59}, {'connected_gene': 'SDCCAG3', 'score': 15.1}, {'connected_gene': 'ANAPC2', 'score': 12.28}, {'connected_gene': 'RNF208', 'score': 7.2}, {'connected_gene': 'CYSRT1', 'score': 7.15}, {'connected_gene': 'NDOR1', 'score': 6.77}, {'connected_gene': 'MRPL41', 'score': 5.76}, {'connected_gene': 'GRIN1', 'score': 3.3}, {'connected_gene': 'FBXW5', 'score': 2.93}, {'connected_gene': 'NSMF', 'score': 2.57}, {'connected_gene': 'NPDC1', 'score': 2.53}, {'connected_gene': 'ARRDC1-AS1', 'score': 2.52}, {'connected_gene': 'DPH7', 'score': 1.92}, {'connected_gene': 'TPRN', 'score': 1.77}, {'connected_gene': 'NELFB', 'score': 1.57}, {'connected_gene': 'RABL6', 'score': 1.51}, {'connected_gene': 'ABCA2', 'score': 1.5}, {'connected_gene': 'TMEM203', 'score': 1.43}, {'connected_gene': 'SSNA1', 'score': 1.43}]
chr9	GH09I137160	137160773	137166026	0.87	[{'connected_gene': 'DPP7', 'score': 17.29}, {'connected_gene': 'SSNA1', 'score': 12.75}, {'connected_gene': 'ANAPC2', 'score': 12.75}, {'connected_gene': 'TPRN', 'score': 12.7}, {'connected_gene': 'GRIN1', 'score': 12.48}, {'connected_gene': 'MAN1B1', 'score': 12.35}, {'connected_gene': 'NDOR1', 'score': 11.94}, {'connected_gene': 'TMEM203', 'score': 11.94}, {'connected_gene': 'NPDC1', 'score': 5.71}, {'connected_gene': 'EXD3', 'score': 5.58}, {'connected_gene': 'UAP1L1', 'score': 4.82}, {'connected_gene': 'LOC105376328', 'score': 0.44}, {'connected_gene': 'MIR3621', 'score': 0.44}]
chr9	GH09I137187	137187467	137191794	2.3	[{'connected_gene': 'ANAPC2', 'score': 561.32}, {'connected_gene': 'SSNA1', 'score': 558.35}, {'connected_gene': 'PIR44674', 'score': 550.77}, {'connected_gene': 'LOC651337', 'score': 10.79}, {'connected_gene': 'DPH7', 'score': 10.65}, {'connected_gene': 'EHMT1', 'score': 10.16}, {'connected_gene': 'TPRN', 'score': 7.72}, {'connected_gene': 'PIR49240', 'score': 0.39}]
chr9	GH09I137193	137193566	137203331	2.73	[{'connected_gene': 'TPRN', 'score': 551.64}, {'connected_gene': 'EHMT1', 'score': 41.27}, {'connected_gene': 'SDCCAG3', 'score': 24.16}, {'connected_gene': 'LOC651337', 'score': 23.64}, {'connected_gene': 'ANAPC2', 'score': 21.66}, {'connected_gene': 'SNAPC4', 'score': 14.7}, {'connected_gene': 'FAM166A', 'score': 11.83}, {'connected_gene': 'NDOR1', 'score': 11.08}, {'connected_gene': 'INPP5E', 'score': 10.89}, {'connected_gene': 'ZMYND19', 'score': 10.71}, {'connected_gene': 'ARRDC1-AS1', 'score': 9.89}, {'connected_gene': 'SSNA1', 'score': 5.43}, {'connected_gene': 'LCNL1', 'score': 2.06}, {'connected_gene': 'ABCA2', 'score': 1.93}, {'connected_gene': 'PNPLA7', 'score': 1.45}, {'connected_gene': 'C8G', 'score': 1.33}, {'connected_gene': 'PIR49240', 'score': 0.77}, {'connected_gene': 'PIR44674', 'score': 0.44}]
chr9	GH09I137156	137156397	137157598	0.75	[{'connected_gene': 'LOC105376328', 'score': 550.77}, {'connected_gene': 'MAN1B1', 'score': 17.59}, {'connected_gene': 'ANAPC2', 'score': 12.96}, {'connected_gene': 'SSNA1', 'score': 12.44}, {'connected_gene': 'TPRN', 'score': 12.39}, {'connected_gene': 'DPP7', 'score': 12.1}, {'connected_gene': 'NDOR1', 'score': 11.42}, {'connected_gene': 'TMEM203', 'score': 11.42}, {'connected_gene': 'C9orf139', 'score': 11.0}, {'connected_gene': 'ABCA2', 'score': 11.0}, {'connected_gene': 'UAP1L1', 'score': 6.24}, {'connected_gene': 'MIR3621', 'score': 0.39}, {'connected_gene': 'GRIN1', 'score': 0.37}]
chr9	GH09I136884	136884710	136887839	2.23	[{'connected_gene': 'MIR4479', 'score': 550.77}, {'connected_gene': 'TRAF2', 'score': 550.77}, {'connected_gene': 'LOC105376326', 'score': 550.77}, {'connected_gene': 'EHMT1', 'score': 38.48}, {'connected_gene': 'SDCCAG3', 'score': 24.18}, {'connected_gene': 'ANAPC2', 'score': 22.04}, {'connected_gene': 'PHPT1', 'score': 21.75}, {'connected_gene': 'SNHG7', 'score': 16.35}, {'connected_gene': 'LOC651337', 'score': 15.58}, {'connected_gene': 'MAMDC4', 'score': 12.44}, {'connected_gene': 'AJM1', 'score': 12.42}, {'connected_gene': 'FBXW5', 'score': 11.85}, {'connected_gene': 'C8G', 'score': 11.85}, {'connected_gene': 'LCN12', 'score': 11.84}, {'connected_gene': 'TMEM141', 'score': 11.81}, {'connected_gene': 'PRR31', 'score': 11.74}, {'connected_gene': 'CCDC183-AS1', 'score': 11.55}, {'connected_gene': 'RABL6', 'score': 11.55}, {'connected_gene': 'CCDC183', 'score': 11.54}, {'connected_gene': 'ABCA2', 'score': 11.36}, {'connected_gene': 'C9orf139', 'score': 11.36}, {'connected_gene': 'EXD3', 'score': 10.7}, {'connected_gene': 'MAN1B1', 'score': 10.32}, {'connected_gene': 'DPP7', 'score': 10.31}, {'connected_gene': 'GRIN1', 'score': 10.31}, {'connected_gene': 'SSNA1', 'score': 10.29}, {'connected_gene': 'TPRN', 'score': 10.29}, {'connected_gene': 'DPH7', 'score': 9.84}, {'connected_gene': 'LCNL1', 'score': 5.9}]
chr9	GH09I137166	137166082	137176207	2.11	[{'connected_gene': 'TMEM210', 'score': 550.77}, {'connected_gene': 'LRRC26', 'score': 550.77}, {'connected_gene': 'ENSG00000261793', 'score': 550.77}, {'connected_gene': 'MIR3621', 'score': 550.77}, {'connected_gene': 'MAN1B1', 'score': 22.07}, {'connected_gene': 'TPRN', 'score': 19.45}, {'connected_gene': 'DPH7', 'score': 17.0}, {'connected_gene': 'INPP5E', 'score': 16.36}, {'connected_gene': 'ARRDC1-AS1', 'score': 13.82}, {'connected_gene': 'EXD3', 'score': 13.24}, {'connected_gene': 'NDOR1', 'score': 12.45}, {'connected_gene': 'TMEM203', 'score': 12.45}, {'connected_gene': 'GRIN1', 'score': 12.32}, {'connected_gene': 'DPP7', 'score': 12.25}, {'connected_gene': 'SNAPC4', 'score': 11.86}, {'connected_gene': 'ANAPC2', 'score': 11.64}, {'connected_gene': 'ENSG00000199411', 'score': 11.61}, {'connected_gene': 'QSOX2', 'score': 10.99}, {'connected_gene': 'CCDC183-AS1', 'score': 9.82}, {'connected_gene': 'SSNA1', 'score': 5.49}, {'connected_gene': 'UAP1L1', 'score': 4.84}, {'connected_gene': 'LCNL1', 'score': 2.23}, {'connected_gene': 'ABCA2', 'score': 2.03}, {'connected_gene': 'PAXX', 'score': 1.93}, {'connected_gene': 'CLIC3', 'score': 1.86}, {'connected_gene': 'FUT7', 'score': 1.55}]
chr9	GH09I136881	136881316	136884008	1.4	[{'connected_gene': 'TRAF2', 'score': 550.77}, {'connected_gene': 'PHPT1', 'score': 23.32}, {'connected_gene': 'MAMDC4', 'score': 12.46}, {'connected_gene': 'AJM1', 'score': 12.44}, {'connected_gene': 'TMEM141', 'score': 11.81}, {'connected_gene': 'LCN12', 'score': 11.77}, {'connected_gene': 'PRR31', 'score': 11.73}, {'connected_gene': 'FBXW5', 'score': 11.6}, {'connected_gene': 'C8G', 'score': 11.6}, {'connected_gene': 'RABL6', 'score': 11.39}, {'connected_gene': 'ABCA2', 'score': 11.36}, {'connected_gene': 'C9orf139', 'score': 11.36}, {'connected_gene': 'CCDC183', 'score': 11.36}, {'connected_gene': 'CCDC183-AS1', 'score': 10.91}, {'connected_gene': 'SSNA1', 'score': 10.29}, {'connected_gene': 'ANAPC2', 'score': 10.29}, {'connected_gene': 'TPRN', 'score': 10.29}, {'connected_gene': 'LOC105376326', 'score': 0.77}]
chr9	GH09I137176	137176629	137176778	0.69	[{'connected_gene': 'GC09M137178', 'score': 550.77}, {'connected_gene': 'PIR32559', 'score': 550.77}, {'connected_gene': 'NDOR1', 'score': 18.92}, {'connected_gene': 'ANAPC2', 'score': 15.63}, {'connected_gene': 'MAN1B1', 'score': 13.13}, {'connected_gene': 'EHMT1', 'score': 12.63}, {'connected_gene': 'LOC651337', 'score': 11.33}, {'connected_gene': 'TRAF2', 'score': 10.7}, {'connected_gene': 'DPH7', 'score': 10.19}, {'connected_gene': 'SDCCAG3', 'score': 10.0}, {'connected_gene': 'SSNA1', 'score': 5.53}]