PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000520408	[[9413423, 9414122], [9437668, 9437893], [9473091, 9473187], [9537460, 9537497], [9538234, 9538310], [9562172, 9562267], [9563696, 9563763], [9564320, 9564507], [9565880, 9566002], [9567464, 9567556], [9567651, 9567919]]	[[9413449, 9414122], [9437668, 9437893], [9473091, 9473187], [9537460, 9537497], [9538234, 9538310], [9562172, 9562267], [9563696, 9563763], [9564320, 9564507], [9565880, 9566002], [9567464, 9567556], [9567651, 9567835]]
ENST00000310430	[[9413423, 9414122], [9437668, 9437893], [9473091, 9473187], [9537460, 9537497], [9538234, 9538310], [9562172, 9562267], [9563696, 9563763], [9564320, 9564507], [9565880, 9566002], [9567464, 9567556], [9567651, 9567730], [9577883, 9578055], [9584150, 9584230], [9588399, 9588545], [9590788, 9590954], [9592374, 9592594], [9592886, 9592996], [9605533, 9605722], [9609118, 9609356], [9610053, 9610136], [9619025, 9619146], [9620656, 9620754], [9622225, 9622300], [9623201, 9623307], [9623748, 9623935], [9627615, 9627772], [9634159, 9639856]]	[[9413449, 9414122], [9437668, 9437893], [9473091, 9473187], [9537460, 9537497], [9538234, 9538310], [9562172, 9562267], [9563696, 9563763], [9564320, 9564507], [9565880, 9566002], [9567464, 9567556], [9567651, 9567730], [9577883, 9578055], [9584150, 9584230], [9588399, 9588545], [9590788, 9590954], [9592374, 9592594], [9592886, 9592996], [9605533, 9605722], [9609118, 9609356], [9610053, 9610136], [9619025, 9619146], [9620656, 9620754], [9622225, 9622300], [9623201, 9623307], [9623748, 9623935], [9627615, 9627772], [9634159, 9634246]]
ENST00000518281	[[9432516, 9432909], [9437668, 9437893], [9473091, 9473187], [9537460, 9537497], [9538234, 9538310], [9562172, 9562267], [9563696, 9563763], [9564320, 9564507], [9565880, 9566002], [9567464, 9567556], [9567651, 9567730], [9577883, 9578055], [9584150, 9584230], [9588399, 9588545], [9590788, 9590954], [9592374, 9592594], [9592886, 9592996], [9605533, 9605722], [9609118, 9609356], [9610053, 9610136], [9619025, 9619146], [9620656, 9620754], [9622225, 9622300], [9623201, 9623307], [9623748, 9623935], [9627615, 9627772], [9634159, 9634439]]	[[9437706, 9437893], [9473091, 9473187], [9537460, 9537497], [9538234, 9538310], [9562172, 9562267], [9563696, 9563763], [9564320, 9564507], [9565880, 9566002], [9567464, 9567556], [9567651, 9567730], [9577883, 9578055], [9584150, 9584230], [9588399, 9588545], [9590788, 9590954], [9592374, 9592594], [9592886, 9592996], [9605533, 9605722], [9609118, 9609356], [9610053, 9610136], [9619025, 9619146], [9620656, 9620754], [9622225, 9622300], [9623201, 9623307], [9623748, 9623935], [9627615, 9627772], [9634159, 9634246]]
ENST00000522110	[[9413441, 9416341]]	[[9413449, 9414181]]
ENST00000517652	[[9423769, 9424036]]	None
ENST00000518027	[[9472799, 9472996], [9473091, 9473187], [9537460, 9537497], [9538234, 9538310], [9562172, 9562267], [9563696, 9563763], [9564320, 9564518]]	None
ENST00000521039	[[9527628, 9527706], [9528236, 9528299], [9528489, 9528566], [9528655, 9528713], [9537460, 9537497], [9538234, 9538666]]	None
ENST00000519392	[[9537263, 9537346], [9537460, 9537497], [9538234, 9538310], [9562172, 9562267], [9563696, 9563763], [9564320, 9564518]]	None
ENST00000517989	[[9537355, 9537497], [9538234, 9538310], [9562172, 9562267], [9563696, 9563763], [9564320, 9564507], [9565880, 9565916]]	None
ENST00000519930	[[9577965, 9578055], [9579907, 9580010], [9584150, 9584230], [9588399, 9588483]]	None
ENST00000518635	[[9592500, 9592594], [9592886, 9592996], [9600973, 9601082], [9605533, 9605723]]	[[9592500, 9592594], [9592886, 9592996], [9600973, 9600976]]
ENST00000519191	[[9598423, 9598625], [9605533, 9605722], [9609118, 9609223]]	None
ENST00000517770	[[9627640, 9627772], [9629878, 9629933], [9634159, 9634546]]	[[9627640, 9627772]]
NM_003747	[[9413444, 9414122], [9437668, 9437893], [9473091, 9473187], [9537460, 9537497], [9538234, 9538310], [9562172, 9562267], [9563696, 9563763], [9564320, 9564507], [9565880, 9566002], [9567464, 9567556], [9567651, 9567730], [9577883, 9578055], [9584150, 9584230], [9588399, 9588545], [9590788, 9590954], [9592374, 9592594], [9592886, 9592996], [9605533, 9605722], [9609118, 9609356], [9610053, 9610136], [9619025, 9619146], [9620656, 9620754], [9622225, 9622300], [9623201, 9623307], [9623748, 9623935], [9627615, 9627772], [9634159, 9639856]]	[[9413449, 9414122], [9437668, 9437893], [9473091, 9473187], [9537460, 9537497], [9538234, 9538310], [9562172, 9562267], [9563696, 9563763], [9564320, 9564507], [9565880, 9566002], [9567464, 9567556], [9567651, 9567730], [9577883, 9578055], [9584150, 9584230], [9588399, 9588545], [9590788, 9590954], [9592374, 9592594], [9592886, 9592996], [9605533, 9605722], [9609118, 9609356], [9610053, 9610136], [9619025, 9619146], [9620656, 9620754], [9622225, 9622300], [9623201, 9623307], [9623748, 9623935], [9627615, 9627772], [9634159, 9634246]]

Promoter

Chrom	Start	End	Description
chr8	9413410	9413451	CAGE_peak_1_at_TNKS_5end
chr8	9537280	9537331	CAGE_peak_2_at_TNKS_5end
chr8	9537355	9537397	CAGE_peak_3_at_TNKS_5end
chr8	9537398	9537415	CAGE_peak_8_at_TNKS_5end
chr8	9577966	9577972	CAGE_peak_26_at_TNKS_5end
chr8	9577986	9578004	CAGE_peak_12_at_TNKS_5end
chr8	9578005	9578014	CAGE_peak_22_at_TNKS_5end
chr8	9598356	9598358	CAGE_peak_4_at_TNKS_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I009592	9592401	9592620	0.4	[{'connected_gene': 'TNKS', 'score': 12.46}, {'connected_gene': 'MIR597', 'score': 9.27}, {'connected_gene': 'GC08P009566', 'score': 0.31}, {'connected_gene': 'ENSG00000253697', 'score': 0.2}]
chr8	GH08I009608	9608601	9608800	0.62	[{'connected_gene': 'TNKS', 'score': 18.25}, {'connected_gene': 'RPL10P19', 'score': 4.44}, {'connected_gene': 'GC08P009566', 'score': 0.26}, {'connected_gene': 'ENSG00000253697', 'score': 0.25}]
chr8	GH08I009552	9552201	9552600	0.69	[{'connected_gene': 'TNKS', 'score': 0.77}, {'connected_gene': 'LOC100420404', 'score': 0.15}]
chr8	GH08I009516	9516965	9518624	0.58	[{'connected_gene': 'TNKS', 'score': 0.28}, {'connected_gene': 'LOC100420404', 'score': 0.21}]
chr8	GH08I009633	9633410	9634500	0.54	[{'connected_gene': 'TNKS', 'score': 10.75}, {'connected_gene': 'ENSG00000253697', 'score': 0.34}, {'connected_gene': 'GC08P009566', 'score': 0.2}]
chr8	GH08I009577	9577449	9578320	0.66	[{'connected_gene': 'TNKS', 'score': 5.96}, {'connected_gene': 'GC08P009566', 'score': 0.39}, {'connected_gene': 'ENSG00000253697', 'score': 0.18}]
chr8	GH08I009614	9614637	9615400	0.84	[{'connected_gene': 'TNKS', 'score': 18.43}, {'connected_gene': 'ENSG00000253697', 'score': 0.26}, {'connected_gene': 'GC08P009566', 'score': 0.25}]
chr8	GH08I009615	9614211	9614360	0.38	[{'connected_gene': 'TNKS', 'score': 12.1}, {'connected_gene': 'ENSG00000253697', 'score': 0.26}, {'connected_gene': 'GC08P009566', 'score': 0.25}]
chr8	GH08I009781	9781067	9783195	0.96	[{'connected_gene': 'MIR597', 'score': 9.79}, {'connected_gene': 'ERI1', 'score': 5.39}, {'connected_gene': 'PIR58717', 'score': 0.26}, {'connected_gene': 'GC08P009742', 'score': 0.26}, {'connected_gene': 'TNKS', 'score': 0.07}]
chr8	GH08I009780	9780191	9780340	0.31	[{'connected_gene': 'MIR597', 'score': 9.81}, {'connected_gene': 'GC08P009742', 'score': 0.28}, {'connected_gene': 'PIR58717', 'score': 0.26}, {'connected_gene': 'TNKS', 'score': 0.07}]
chr8	GH08I009775	9775699	9776775	0.46	[{'connected_gene': 'MIR597', 'score': 10.62}, {'connected_gene': 'GC08P009742', 'score': 0.29}, {'connected_gene': 'PIR58717', 'score': 0.25}, {'connected_gene': 'TNKS', 'score': 0.07}]
chr8	GH08I009719	9719911	9720795	0.59	[{'connected_gene': 'MIR597', 'score': 10.79}, {'connected_gene': 'RPL10P19', 'score': 8.0}, {'connected_gene': 'TNKS', 'score': 5.62}, {'connected_gene': 'ENSG00000272267', 'score': 5.0}, {'connected_gene': 'GC08P009743', 'score': 0.34}, {'connected_gene': 'ENSG00000253697', 'score': 0.21}]
chr8	GH08I009549	9549913	9551794	1.15	[{'connected_gene': 'RPL10P19', 'score': 7.64}, {'connected_gene': 'TNKS', 'score': 0.77}, {'connected_gene': 'LOC100420404', 'score': 0.15}]
chr8	GH08I009628	9628676	9629730	0.2	[{'connected_gene': 'RPL10P19', 'score': 4.43}, {'connected_gene': 'ENSG00000253697', 'score': 0.31}, {'connected_gene': 'GC08P009566', 'score': 0.21}, {'connected_gene': 'TNKS', 'score': 0.19}]
chr8	GH08I009916	9916890	9917259	0.46	[{'connected_gene': 'MSRA', 'score': 13.72}, {'connected_gene': 'TNKS', 'score': 1.25}, {'connected_gene': 'LINC00599', 'score': 0.39}, {'connected_gene': 'LOC105379234', 'score': 0.12}]
chr8	GH08I008624	8624609	8628490	1.27	[{'connected_gene': 'FAM86B3P', 'score': 11.72}, {'connected_gene': 'TNKS', 'score': 10.82}, {'connected_gene': 'CLDN23', 'score': 10.27}, {'connected_gene': 'ALG1L13P', 'score': 6.84}, {'connected_gene': 'RPL10P19', 'score': 4.59}, {'connected_gene': 'RN7SL178P', 'score': 0.26}, {'connected_gene': 'GC08M008584', 'score': 0.26}, {'connected_gene': 'LOC105379225', 'score': 0.21}]
chr8	GH08I008867	8867982	8874619	1.41	[{'connected_gene': 'FAM86B3P', 'score': 34.09}, {'connected_gene': 'FAM90A11P', 'score': 21.55}, {'connected_gene': 'TNKS', 'score': 14.87}, {'connected_gene': 'FAM66E', 'score': 12.57}, {'connected_gene': 'ERI1', 'score': 10.54}, {'connected_gene': 'MFHAS1', 'score': 8.52}, {'connected_gene': 'ENSG00000254367', 'score': 0.17}]
chr8	GH08I009368	9368929	9369447	0.81	[{'connected_gene': 'LOC105379230', 'score': 10.96}, {'connected_gene': 'TNKS', 'score': 9.95}, {'connected_gene': 'GC08M009373', 'score': 0.77}, {'connected_gene': 'LOC105379231', 'score': 0.44}, {'connected_gene': 'LOC157273', 'score': 0.13}]
chr8	GH08I009554	9554608	9557801	2.04	[{'connected_gene': 'ENSG00000272267', 'score': 557.52}, {'connected_gene': 'TNKS', 'score': 556.5}, {'connected_gene': 'RPL10P19', 'score': 4.1}]
chr8	GH08I009653	9653531	9653680	0.46	[{'connected_gene': 'ENSG00000253697', 'score': 0.77}, {'connected_gene': 'GC08P009566', 'score': 0.17}, {'connected_gene': 'TNKS', 'score': 0.15}]
chr8	GH08I009651	9651631	9651780	0.46	[{'connected_gene': 'ENSG00000253697', 'score': 0.44}, {'connected_gene': 'GC08P009566', 'score': 0.17}, {'connected_gene': 'TNKS', 'score': 0.15}]
chr8	GH08I009627	9627401	9627600	0.2	[{'connected_gene': 'ENSG00000253697', 'score': 0.29}, {'connected_gene': 'GC08P009566', 'score': 0.21}, {'connected_gene': 'TNKS', 'score': 0.19}]
chr8	GH08I009629	9628001	9628400	0.2	[{'connected_gene': 'ENSG00000272267', 'score': 5.67}, {'connected_gene': 'ENSG00000253697', 'score': 0.29}, {'connected_gene': 'GC08P009566', 'score': 0.21}, {'connected_gene': 'TNKS', 'score': 0.19}]