PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000301838	[[70049268, 70049851], [70052238, 70053496]]	[[70049565, 70049851], [70052238, 70052579]]
NM_003824	[[70049268, 70049851], [70052238, 70053508]]	[[70049565, 70049851], [70052238, 70052579]]

Promoter

Chrom	Start	End	Description
chr11	70049367	70049379	CAGE_peak_3_at_FADD_5end
chr11	70049394	70049445	CAGE_peak_1_at_FADD_5end
chr11	70049448	70049466	CAGE_peak_2_at_FADD_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I069947	69947607	69950765	1.62	[{'connected_gene': 'FADD', 'score': 12.18}, {'connected_gene': 'ENSG00000254721', 'score': 10.72}, {'connected_gene': 'ANO1', 'score': 10.63}, {'connected_gene': 'ANO1-AS1', 'score': 10.59}, {'connected_gene': 'ENSG00000260679', 'score': 0.34}, {'connected_gene': 'ENSG00000255191', 'score': 0.28}]
chr11	GH11I070202	70202324	70206109	2.24	[{'connected_gene': 'FADD', 'score': 550.77}, {'connected_gene': 'ENSG00000254721', 'score': 0.77}]
chr11	GH11I070242	70242646	70246866	0.76	[{'connected_gene': 'PPFIA1', 'score': 18.58}, {'connected_gene': 'FADD', 'score': 17.3}, {'connected_gene': 'ENSG00000254721', 'score': 11.57}, {'connected_gene': 'LOC105369373', 'score': 11.0}, {'connected_gene': 'ANO1-AS1', 'score': 10.47}, {'connected_gene': 'CTTN', 'score': 10.45}, {'connected_gene': 'ENSG00000246889', 'score': 10.45}, {'connected_gene': 'GC11M070237', 'score': 0.44}, {'connected_gene': 'GC11P070255', 'score': 0.39}]
chr11	GH11I070232	70232899	70234612	1.19	[{'connected_gene': 'PPFIA1', 'score': 17.42}, {'connected_gene': 'CTTN', 'score': 15.9}, {'connected_gene': 'FADD', 'score': 14.25}, {'connected_gene': 'ENSG00000254721', 'score': 11.61}, {'connected_gene': 'LOC105369373', 'score': 10.98}, {'connected_gene': 'ANO1-AS1', 'score': 10.49}, {'connected_gene': 'ENSG00000246889', 'score': 10.44}, {'connected_gene': 'ANO1', 'score': 1.52}, {'connected_gene': 'GC11M070237', 'score': 0.77}, {'connected_gene': 'PIR45158', 'score': 0.34}, {'connected_gene': 'GC11P070210', 'score': 0.34}]
chr11	GH11I070414	70414374	70416411	0.8	[{'connected_gene': 'PPFIA1', 'score': 28.34}, {'connected_gene': 'LOC105369373', 'score': 11.22}, {'connected_gene': 'ENSG00000254721', 'score': 10.93}, {'connected_gene': 'FADD', 'score': 10.93}, {'connected_gene': 'ENSG00000254495', 'score': 10.79}, {'connected_gene': 'CTTN', 'score': 10.03}, {'connected_gene': 'ENSG00000246889', 'score': 0.37}, {'connected_gene': 'GC11P070444', 'score': 0.31}]
chr11	GH11I069355	69355387	69357549	0.81	[{'connected_gene': 'PPP6R3', 'score': 28.37}, {'connected_gene': 'ORAOV1', 'score': 23.91}, {'connected_gene': 'MYEOV', 'score': 23.03}, {'connected_gene': 'MRGPRF', 'score': 18.54}, {'connected_gene': 'ENSG00000260808', 'score': 13.88}, {'connected_gene': 'TPCN2', 'score': 12.98}, {'connected_gene': 'MRGPRF-AS1', 'score': 11.58}, {'connected_gene': 'FADD', 'score': 11.4}, {'connected_gene': 'ENSG00000261625', 'score': 11.02}, {'connected_gene': 'ANO1', 'score': 9.95}, {'connected_gene': 'GC11P069370', 'score': 0.39}, {'connected_gene': 'IFITM9P', 'score': 0.23}, {'connected_gene': 'LOC105369370', 'score': 0.22}]
chr11	GH11I069434	69434220	69438335	1.33	[{'connected_gene': 'PPP6R3', 'score': 18.43}, {'connected_gene': 'ENSG00000260808', 'score': 13.88}, {'connected_gene': 'TPCN2', 'score': 12.97}, {'connected_gene': 'ORAOV1', 'score': 11.55}, {'connected_gene': 'FADD', 'score': 11.4}, {'connected_gene': 'MRGPRF', 'score': 9.77}, {'connected_gene': 'PPFIA1', 'score': 4.8}, {'connected_gene': 'ENSG00000255606', 'score': 0.44}, {'connected_gene': 'LOC102724265', 'score': 0.39}]
chr11	GH11I070048	70048655	70048984	1.19	[{'connected_gene': 'ANO1', 'score': 8.31}, {'connected_gene': 'FADD', 'score': 4.92}, {'connected_gene': 'LOC101928443', 'score': 0.37}, {'connected_gene': 'ENSG00000254605', 'score': 0.31}]
chr11	GH11I069292	69292828	69304385	2.31	[{'connected_gene': 'MYEOV', 'score': 550.77}, {'connected_gene': 'LOC105369370', 'score': 550.77}, {'connected_gene': 'ORAOV1', 'score': 53.11}, {'connected_gene': 'TPCN2', 'score': 32.88}, {'connected_gene': 'PPP6R3', 'score': 31.91}, {'connected_gene': 'ENSG00000260808', 'score': 22.89}, {'connected_gene': 'FADD', 'score': 19.91}, {'connected_gene': 'IGHMBP2', 'score': 14.28}, {'connected_gene': 'LRP5', 'score': 10.2}, {'connected_gene': 'ANO1', 'score': 9.95}, {'connected_gene': 'MRGPRF-AS1', 'score': 9.81}, {'connected_gene': 'MRGPRF', 'score': 9.78}, {'connected_gene': 'ENSG00000260877', 'score': 5.06}, {'connected_gene': 'LOC338694', 'score': 4.39}, {'connected_gene': 'IFITM9P', 'score': 0.44}]
chr11	GH11I069842	69842213	69842362	0.57	[{'connected_gene': 'FGF3', 'score': 12.57}, {'connected_gene': 'FGF4', 'score': 11.47}, {'connected_gene': 'FADD', 'score': 10.31}, {'connected_gene': 'ENSG00000254721', 'score': 10.31}, {'connected_gene': 'ENSG00000260348', 'score': 0.2}]
chr11	GH11I069843	69843193	69843322	0.2	[{'connected_gene': 'FGF3', 'score': 12.57}, {'connected_gene': 'FGF4', 'score': 11.47}, {'connected_gene': 'FADD', 'score': 10.31}, {'connected_gene': 'ENSG00000254721', 'score': 10.31}, {'connected_gene': 'ENSG00000260348', 'score': 0.2}]
chr11	GH11I070090	70090708	70093205	0.67	[{'connected_gene': 'ORAOV1', 'score': 11.53}, {'connected_gene': 'FADD', 'score': 11.51}, {'connected_gene': 'LOC101928443', 'score': 5.54}, {'connected_gene': 'ANO1', 'score': 5.21}, {'connected_gene': 'ENSG00000255143', 'score': 0.28}]
chr11	GH11I069273	69273699	69275471	1.28	[{'connected_gene': 'ORAOV1', 'score': 32.22}, {'connected_gene': 'PPP6R3', 'score': 31.15}, {'connected_gene': 'ENSG00000260808', 'score': 22.96}, {'connected_gene': 'TPCN2', 'score': 20.96}, {'connected_gene': 'FADD', 'score': 11.4}, {'connected_gene': 'MRGPRF-AS1', 'score': 11.34}, {'connected_gene': 'IGHMBP2', 'score': 10.53}, {'connected_gene': 'LRP5', 'score': 10.2}, {'connected_gene': 'ANO1', 'score': 9.95}, {'connected_gene': 'MRGPRF', 'score': 9.79}, {'connected_gene': 'GC11M069240', 'score': 0.77}, {'connected_gene': 'MYEOV', 'score': 0.37}]
chr11	GH11I070419	70419417	70421502	0.98	[{'connected_gene': 'CTTN', 'score': 9.51}, {'connected_gene': 'FADD', 'score': 4.89}, {'connected_gene': 'ENSG00000246889', 'score': 0.34}, {'connected_gene': 'GC11P070444', 'score': 0.34}]
chr11	GH11I070396	70396956	70401200	2.35	[{'connected_gene': 'CTTN', 'score': 561.05}, {'connected_gene': 'ENSG00000246889', 'score': 550.77}, {'connected_gene': 'PPFIA1', 'score': 46.9}, {'connected_gene': 'FADD', 'score': 1.98}, {'connected_gene': 'ANO1', 'score': 1.71}, {'connected_gene': 'GC11P070444', 'score': 0.25}]
chr11	GH11I070174	70174420	70175636	0.38	[{'connected_gene': 'LOC101928473', 'score': 550.77}, {'connected_gene': 'FADD', 'score': 11.65}, {'connected_gene': 'ENSG00000254721', 'score': 11.63}, {'connected_gene': 'GC11P070167', 'score': 0.44}, {'connected_gene': 'ANO1', 'score': 0.15}]
chr11	GH11I070646	70646396	70646740	0.62	[{'connected_gene': 'SHANK2-AS2', 'score': 550.77}, {'connected_gene': 'ORAOV1', 'score': 47.31}, {'connected_gene': 'NADSYN1', 'score': 22.82}, {'connected_gene': 'FADD', 'score': 11.79}, {'connected_gene': 'CTTN', 'score': 10.59}, {'connected_gene': 'ENSG00000254495', 'score': 10.33}, {'connected_gene': 'GC11M070662', 'score': 0.37}, {'connected_gene': 'SHANK2', 'score': 0.03}]
chr11	GH11I070191	70191635	70191784	0.74	[{'connected_gene': 'ANO1-AS1', 'score': 0.77}, {'connected_gene': 'FADD', 'score': 0.39}, {'connected_gene': 'GC11P070167', 'score': 0.31}]
chr11	GH11I070196	70196215	70196364	0.81	[{'connected_gene': 'ANO1-AS1', 'score': 0.44}, {'connected_gene': 'FADD', 'score': 0.44}, {'connected_gene': 'GC11P070167', 'score': 0.29}]
chr11	GH11I070154	70154965	70161060	1.04	[{'connected_gene': 'ANO1-AS1', 'score': 11.49}, {'connected_gene': 'FGF4', 'score': 9.83}, {'connected_gene': 'ANO1', 'score': 7.38}, {'connected_gene': 'PPFIA1', 'score': 2.05}, {'connected_gene': 'CTTN', 'score': 1.85}, {'connected_gene': 'FADD', 'score': 1.5}, {'connected_gene': 'GC11P070167', 'score': 0.44}, {'connected_gene': 'LOC105369372', 'score': 0.37}]