PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000312584	[[22993100, 22995516], [22995700, 22995773], [23001962, 23002148], [23002570, 23002602], [23003180, 23003434], [23004473, 23004585], [23005950, 23006064], [23012386, 23012492], [23021298, 23021543]]	[[22995382, 22995516], [22995700, 22995773], [23001962, 23002148], [23002570, 23002602], [23003180, 23003434], [23004473, 23004585], [23005950, 23006064], [23012386, 23012492], [23021298, 23021448]]
NM_003840	[[22993100, 22995516], [22995700, 22995773], [23001962, 23002148], [23002570, 23002602], [23003180, 23003434], [23004473, 23004585], [23005950, 23006064], [23012386, 23012492], [23021298, 23021543]]	[[22995382, 22995516], [22995700, 22995773], [23001962, 23002148], [23002570, 23002602], [23003180, 23003434], [23004473, 23004585], [23005950, 23006064], [23012386, 23012492], [23021298, 23021448]]

Promoter

Chrom	Start	End	Description
chr8	23021533	23021549	CAGE_peak_1_at_TNFRSF10D_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr8	GH08I023171	23171368	23172149	0.78	[{'connected_gene': 'CHMP7', 'score': 12.79}, {'connected_gene': 'R3HCC1', 'score': 11.36}, {'connected_gene': 'TNFRSF10D', 'score': 0.44}, {'connected_gene': 'TNFRSF10A-AS1', 'score': 0.37}]
chr8	GH08I023180	23180202	23183081	1.51	[{'connected_gene': 'TNFRSF10A', 'score': 12.79}, {'connected_gene': 'LOC389641', 'score': 12.79}, {'connected_gene': 'ENSG00000250714', 'score': 11.83}, {'connected_gene': 'CHMP7', 'score': 10.75}, {'connected_gene': 'R3HCC1', 'score': 10.71}, {'connected_gene': 'ENTPD4', 'score': 1.64}, {'connected_gene': 'TNFRSF10D', 'score': 1.47}, {'connected_gene': 'TNFRSF10A-AS1', 'score': 0.44}]
chr8	GH08I023158	23158893	23159055	0.23	[{'connected_gene': 'TNFRSF10C', 'score': 16.12}, {'connected_gene': 'ENSG00000250714', 'score': 11.07}, {'connected_gene': 'ENTPD4', 'score': 5.15}, {'connected_gene': 'BIN3', 'score': 2.98}, {'connected_gene': 'TNFRSF10D', 'score': 0.44}, {'connected_gene': 'GC08P023143', 'score': 0.37}]
chr8	GH08I023159	23159833	23164944	2.49	[{'connected_gene': 'TNFRSF10D', 'score': 557.76}, {'connected_gene': 'ENSG00000253200', 'score': 47.32}, {'connected_gene': 'ENTPD4', 'score': 31.4}, {'connected_gene': 'C8orf58', 'score': 28.97}, {'connected_gene': 'POLR3D', 'score': 24.37}, {'connected_gene': 'CCAR2', 'score': 22.78}, {'connected_gene': 'BIN3', 'score': 13.46}, {'connected_gene': 'CHMP7', 'score': 12.77}, {'connected_gene': 'TNFRSF10A', 'score': 11.98}, {'connected_gene': 'LOC389641', 'score': 11.98}, {'connected_gene': 'ENSG00000250714', 'score': 11.88}, {'connected_gene': 'TNFRSF10C', 'score': 11.59}, {'connected_gene': 'R3HCC1', 'score': 11.35}, {'connected_gene': 'SORBS3', 'score': 11.29}, {'connected_gene': 'LOC107986927', 'score': 10.64}, {'connected_gene': 'LOXL2', 'score': 10.36}, {'connected_gene': 'ENSG00000253390', 'score': 10.34}, {'connected_gene': 'TNFRSF10B', 'score': 6.08}, {'connected_gene': 'GC08P023143', 'score': 0.37}]
chr8	GH08I023350	23350602	23357864	1.55	[{'connected_gene': 'LOXL2', 'score': 9.81}, {'connected_gene': 'ENTPD4', 'score': 8.2}, {'connected_gene': 'SLC25A37', 'score': 5.11}, {'connected_gene': 'TNFRSF10D', 'score': 2.81}, {'connected_gene': 'LOC100507156', 'score': 0.37}, {'connected_gene': 'PIR45078', 'score': 0.29}]
chr8	GH08I023174	23174526	23178458	1.41	[{'connected_gene': 'LOC389641', 'score': 16.82}, {'connected_gene': 'CHMP7', 'score': 12.27}, {'connected_gene': 'TNFRSF10A', 'score': 11.98}, {'connected_gene': 'ENSG00000250714', 'score': 11.82}, {'connected_gene': 'R3HCC1', 'score': 11.27}, {'connected_gene': 'TNFRSF10C', 'score': 11.22}, {'connected_gene': 'TNFRSF10D', 'score': 2.76}, {'connected_gene': 'TNFRSF10B', 'score': 1.91}, {'connected_gene': 'TNFRSF10A-AS1', 'score': 0.39}]