PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000557165	[[99947505, 99947579], [99947674, 99947816], [99958962, 99959211], [99959850, 99959932], [99961834, 99961966], [99967102, 99967208], [99968543, 99968713]]	None
ENST00000389879	[[99947745, 99947816], [99958962, 99959211], [99959850, 99959932], [99961834, 99961966], [99967102, 99967208], [99967692, 99967750], [99968543, 99968713], [99969055, 99969321], [99969947, 99969981], [99973412, 99973484], [99976493, 99978777]]	[[99959014, 99959211], [99959850, 99959932], [99961834, 99961966], [99967102, 99967208], [99967692, 99967750], [99968543, 99968713], [99969055, 99969321], [99969947, 99969981], [99973412, 99973484], [99976493, 99977119]]
ENST00000553636	[[99947748, 99947816], [99958962, 99959440]]	None
ENST00000557441	[[99947748, 99947951], [99958962, 99959211], [99959850, 99959932], [99961834, 99961966], [99967102, 99967208], [99967692, 99967750], [99968543, 99968649]]	[[99959014, 99959211], [99959850, 99959932], [99961834, 99961966], [99967102, 99967208], [99967692, 99967750], [99968543, 99968649]]
ENST00000555049	[[99947760, 99947816], [99958962, 99959211], [99959850, 99959932], [99961834, 99961966], [99967102, 99967208], [99967692, 99967750], [99968543, 99968713], [99969055, 99969321], [99969947, 99969981], [99973412, 99973484], [100001000, 100001381]]	[[99959014, 99959211], [99959850, 99959932], [99961834, 99961966], [99967102, 99967208], [99967692, 99967750], [99968543, 99968713], [99969055, 99969321], [99969947, 99969981], [99973412, 99973484], [100001000, 100001020]]
ENST00000555842	[[99947761, 99947816], [99958282, 99958657], [99958962, 99959211], [99959850, 99959932], [99961834, 99961884]]	[[99959014, 99959211], [99959850, 99959932], [99961834, 99961884]]
ENST00000556641	[[99947786, 99947816], [99958962, 99959211], [99959850, 99959932], [99961834, 99961966], [99967102, 99967356]]	None
ENST00000555942	[[99959850, 99959932], [99961841, 99961965]]	None
ENST00000553865	[[99960306, 99961966], [99967102, 99968713], [99969055, 99969981], [99973412, 99973484], [99976493, 99977851]]	None
NM_001099402	[[99947738, 99947816], [99958962, 99959211], [99959850, 99959932], [99961834, 99961966], [99967102, 99967208], [99967692, 99967750], [99968543, 99968713], [99969055, 99969321], [99969947, 99969981], [99973412, 99973484], [99976493, 99977852]]	[[99959014, 99959211], [99959850, 99959932], [99961834, 99961966], [99967102, 99967208], [99967692, 99967750], [99968543, 99968713], [99969055, 99969321], [99969947, 99969981], [99973412, 99973484], [99976493, 99977119]]

Promoter

Chrom	Start	End	Description
chr14	99947484	99947495	CAGE_peak_19_at_CCNK_5end
chr14	99947502	99947509	CAGE_peak_22_at_CCNK_5end
chr14	99947510	99947527	CAGE_peak_12_at_CCNK_5end
chr14	99947715	99947791	CAGE_peak_1_at_CCNK_5end
chr14	99959842	99959857	CAGE_peak_3_at_CCNK_5end
chr14	99968668	99968684	CAGE_peak_5_at_CCNK_5end
chr14	99969078	99969151	CAGE_peak_2_at_CCNK_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I099462	99462391	99462493	0.2	[{'connected_gene': 'CCNK', 'score': 0.37}, {'connected_gene': 'SETD3', 'score': 0.37}, {'connected_gene': 'RNU6-91P', 'score': 0.37}]
chr14	GH14I099467	99467524	99467673	0.43	[{'connected_gene': 'CCNK', 'score': 0.39}, {'connected_gene': 'SETD3', 'score': 0.39}, {'connected_gene': 'RNU6-91P', 'score': 0.34}]
chr14	GH14I099477	99475784	99475933	0.63	[{'connected_gene': 'CCNK', 'score': 0.44}, {'connected_gene': 'SETD3', 'score': 0.44}, {'connected_gene': 'RNU6-91P', 'score': 0.29}]
chr14	GH14I099459	99459838	99461613	0.66	[{'connected_gene': 'CCNK', 'score': 11.39}, {'connected_gene': 'SETD3', 'score': 11.39}, {'connected_gene': 'RNU6-91P', 'score': 0.37}]
chr14	GH14I099476	99476872	99477599	0.38	[{'connected_gene': 'CCNK', 'score': 0.77}, {'connected_gene': 'SETD3', 'score': 0.77}, {'connected_gene': 'RNU6-91P', 'score': 0.29}]
chr14	GH14I099479	99478002	99478798	0.46	[{'connected_gene': 'CCNK', 'score': 0.77}, {'connected_gene': 'SETD3', 'score': 0.77}, {'connected_gene': 'RNU6-91P', 'score': 0.29}]
chr14	GH14I099478	99478910	99482782	2.06	[{'connected_gene': 'CCNK', 'score': 575.05}, {'connected_gene': 'SETD3', 'score': 556.94}, {'connected_gene': 'RNU6-91P', 'score': 0.28}]
chr14	GH14I099427	99427784	99427953	0.2	[{'connected_gene': 'CCNK', 'score': 10.64}, {'connected_gene': 'SETD3', 'score': 10.64}, {'connected_gene': 'GC14P099446', 'score': 0.37}, {'connected_gene': 'ENSG00000258383', 'score': 0.15}]
chr14	GH14I099394	99394369	99395318	0.2	[{'connected_gene': 'CCNK', 'score': 5.51}, {'connected_gene': 'SETD3', 'score': 5.36}, {'connected_gene': 'GC14P099446', 'score': 0.25}, {'connected_gene': 'ENSG00000258383', 'score': 0.21}]
chr14	GH14I099415	99415600	99416001	0.88	[{'connected_gene': 'CCNK', 'score': 10.17}, {'connected_gene': 'SETD3', 'score': 10.17}, {'connected_gene': 'GC14P099446', 'score': 0.31}, {'connected_gene': 'ENSG00000258383', 'score': 0.18}]
chr14	GH14I099411	99411724	99413949	0.6	[{'connected_gene': 'CCNK', 'score': 14.82}, {'connected_gene': 'SETD3', 'score': 9.99}, {'connected_gene': 'GC14P099446', 'score': 0.29}, {'connected_gene': 'ENSG00000258383', 'score': 0.18}]
chr14	GH14I099430	99430584	99430713	0.54	[{'connected_gene': 'CCNK', 'score': 10.48}, {'connected_gene': 'SETD3', 'score': 10.48}, {'connected_gene': 'GC14P099446', 'score': 0.39}, {'connected_gene': 'ENSG00000258383', 'score': 0.15}]
chr14	GH14I099484	99484466	99484525	0.61	[{'connected_gene': 'CCNK', 'score': 550.77}, {'connected_gene': 'SETD3', 'score': 0.77}, {'connected_gene': 'GC14M099501', 'score': 0.37}]
chr14	GH14I099225	99225561	99237000	1.92	[{'connected_gene': 'CCNK', 'score': 24.24}, {'connected_gene': 'BCL11B', 'score': 12.6}, {'connected_gene': 'ENSG00000234648', 'score': 12.2}, {'connected_gene': 'RPL3P4', 'score': 10.96}, {'connected_gene': 'SETD3', 'score': 4.44}, {'connected_gene': 'GC14M099236', 'score': 0.44}, {'connected_gene': 'GC14M099237', 'score': 0.44}, {'connected_gene': 'GC14P099215', 'score': 0.37}]
chr14	GH14I100470	100470779	100474113	1.05	[{'connected_gene': 'CCNK', 'score': 16.62}, {'connected_gene': 'BEGAIN', 'score': 10.75}, {'connected_gene': 'WARS', 'score': 10.22}, {'connected_gene': 'WDR25', 'score': 10.22}, {'connected_gene': 'ENSG00000258666', 'score': 9.91}, {'connected_gene': 'NDUFB3P4', 'score': 6.1}, {'connected_gene': 'HMGN1P25', 'score': 0.44}, {'connected_gene': 'GC14M100431', 'score': 0.2}, {'connected_gene': 'LOC105370664', 'score': 0.2}]
chr14	GH14I100011	100011324	100013683	0.96	[{'connected_gene': 'CCNK', 'score': 10.76}, {'connected_gene': 'VDAC3P1', 'score': 5.44}, {'connected_gene': 'GC14P100004', 'score': 0.44}, {'connected_gene': 'GC14M100036', 'score': 0.31}, {'connected_gene': 'EVL', 'score': 0.26}]
chr14	GH14I099539	99539908	99543012	0.74	[{'connected_gene': 'CCNK', 'score': 12.02}, {'connected_gene': 'CCDC85C', 'score': 9.16}, {'connected_gene': 'GC14M099518', 'score': 0.44}, {'connected_gene': 'GC14P099584', 'score': 0.26}]
chr14	GH14I100213	100213132	100216238	1.41	[{'connected_gene': 'CCNK', 'score': 10.04}, {'connected_gene': 'SLC25A29', 'score': 5.42}, {'connected_gene': 'EVL', 'score': 4.51}, {'connected_gene': 'GC14M100190', 'score': 0.34}, {'connected_gene': 'ENSG00000258982', 'score': 0.34}, {'connected_gene': 'YY1', 'score': 0.34}]
chr14	GH14I099034	99034801	99038994	1.12	[{'connected_gene': 'CCNK', 'score': 2.61}, {'connected_gene': 'ENSG00000234648', 'score': 0.21}, {'connected_gene': 'LOC105370659', 'score': 0.15}]
chr14	GH14I099468	99468487	99470200	0.63	[{'connected_gene': 'SETD3', 'score': 6.43}, {'connected_gene': 'CCNK', 'score': 5.36}, {'connected_gene': 'RNU6-91P', 'score': 0.31}]
chr14	GH14I099475	99475083	99475749	1.39	[{'connected_gene': 'SETD3', 'score': 550.44}, {'connected_gene': 'CCNK', 'score': 0.44}, {'connected_gene': 'RNU6-91P', 'score': 0.29}]
chr14	GH14I099401	99401171	99401909	0.31	[{'connected_gene': 'SETD3', 'score': 15.49}, {'connected_gene': 'CCNK', 'score': 10.08}, {'connected_gene': 'GC14P099446', 'score': 0.26}, {'connected_gene': 'ENSG00000258383', 'score': 0.2}]
chr14	GH14I099435	99435818	99438147	0.66	[{'connected_gene': 'SETD3', 'score': 16.45}, {'connected_gene': 'CCNK', 'score': 15.64}, {'connected_gene': 'GC14P099446', 'score': 0.44}, {'connected_gene': 'ENSG00000258383', 'score': 0.15}]
chr14	GH14I100236	100236573	100242361	2.25	[{'connected_gene': 'YY1', 'score': 560.66}, {'connected_gene': 'ENSG00000258982', 'score': 550.77}, {'connected_gene': 'GC14P100239', 'score': 550.77}, {'connected_gene': 'CCNK', 'score': 24.33}, {'connected_gene': 'ENSG00000247970', 'score': 12.41}, {'connected_gene': 'WDR25', 'score': 10.51}, {'connected_gene': 'SLC25A29', 'score': 7.35}, {'connected_gene': 'ENSG00000258904', 'score': 0.34}]
chr14	GH14I100284	100284037	100286517	1.69	[{'connected_gene': 'WARS', 'score': 16.7}, {'connected_gene': 'CCNK', 'score': 12.55}, {'connected_gene': 'WDR25', 'score': 11.61}, {'connected_gene': 'SLC25A47', 'score': 11.19}, {'connected_gene': 'PIR46113', 'score': 0.77}, {'connected_gene': 'GC14P100279', 'score': 0.44}, {'connected_gene': 'ENSG00000259052', 'score': 0.44}, {'connected_gene': 'SLC25A29', 'score': 0.34}]
chr14	GH14I100371	100371656	100378153	2.31	[{'connected_gene': 'WARS', 'score': 583.92}, {'connected_gene': 'WDR25', 'score': 573.89}, {'connected_gene': 'SLC25A29', 'score': 15.46}, {'connected_gene': 'CCNK', 'score': 12.55}, {'connected_gene': 'MEG9', 'score': 12.25}, {'connected_gene': 'YY1', 'score': 11.3}, {'connected_gene': 'GC14P100385', 'score': 0.44}]
chr14	GH14I099255	99255435	99275204	3.18	[{'connected_gene': 'BCL11B', 'score': 576.06}, {'connected_gene': 'RPL3P4', 'score': 22.09}, {'connected_gene': 'CCNK', 'score': 20.19}, {'connected_gene': 'ENSG00000234648', 'score': 18.65}, {'connected_gene': 'YY1', 'score': 9.95}, {'connected_gene': 'ENSG00000235785', 'score': 0.77}]
chr14	GH14I100057	100057001	100061694	1.25	[{'connected_gene': 'MIR342', 'score': 12.09}, {'connected_gene': 'CCNK', 'score': 10.04}, {'connected_gene': 'EVL', 'score': 5.59}, {'connected_gene': 'ENSG00000247970', 'score': 4.7}, {'connected_gene': 'GC14M100046', 'score': 0.44}, {'connected_gene': 'ENSG00000258560', 'score': 0.37}]
chr14	GH14I099521	99521902	99523948	1.15	[{'connected_gene': 'RPL3P4', 'score': 11.0}, {'connected_gene': 'WDR25', 'score': 9.98}, {'connected_gene': 'CCNK', 'score': 5.63}, {'connected_gene': 'PIR34457', 'score': 0.44}, {'connected_gene': 'LOC105370661', 'score': 0.39}, {'connected_gene': 'GC14M099518', 'score': 0.39}, {'connected_gene': 'CCDC85C', 'score': 0.18}]
chr14	GH14I099560	99560023	99577989	2.14	[{'connected_gene': 'CCDC85C', 'score': 23.67}, {'connected_gene': 'CCNK', 'score': 14.59}, {'connected_gene': 'ENSG00000234648', 'score': 12.81}, {'connected_gene': 'ENSG00000247970', 'score': 12.0}, {'connected_gene': 'HHIPL1', 'score': 11.22}, {'connected_gene': 'RPL3P4', 'score': 11.18}, {'connected_gene': 'EML1', 'score': 10.12}, {'connected_gene': 'SETD3', 'score': 1.64}, {'connected_gene': 'GC14P099584', 'score': 0.39}, {'connected_gene': 'GC14M099518', 'score': 0.29}]
chr14	GH14I099594	99594642	99606693	2.73	[{'connected_gene': 'CCDC85C', 'score': 558.0}, {'connected_gene': 'HHIPL1', 'score': 14.29}, {'connected_gene': 'WDR25', 'score': 14.17}, {'connected_gene': 'CCNK', 'score': 12.65}, {'connected_gene': 'ENSG00000247970', 'score': 11.56}, {'connected_gene': 'BEGAIN', 'score': 9.75}, {'connected_gene': 'WARS', 'score': 4.64}, {'connected_gene': 'PIR41630', 'score': 0.77}]
chr14	GH14I099530	99530259	99532494	1.02	[{'connected_gene': 'CCDC85C', 'score': 7.75}, {'connected_gene': 'LOC105370661', 'score': 0.77}, {'connected_gene': 'GC14M099518', 'score': 0.77}, {'connected_gene': 'PIR34457', 'score': 0.39}, {'connected_gene': 'CCNK', 'score': 0.23}]
chr14	GH14I099469	99468153	99468171	0.26	[{'connected_gene': 'EML1', 'score': 1.44}, {'connected_gene': 'CCNK', 'score': 0.39}, {'connected_gene': 'SETD3', 'score': 0.39}, {'connected_gene': 'RNU6-91P', 'score': 0.34}]
chr14	GH14I099872	99872026	99873401	0.71	[{'connected_gene': 'EML1', 'score': 15.52}, {'connected_gene': 'CCNK', 'score': 14.47}, {'connected_gene': 'ENSG00000234648', 'score': 12.81}, {'connected_gene': 'RPL3P4', 'score': 11.18}, {'connected_gene': 'CYP46A1', 'score': 10.68}, {'connected_gene': 'GC14M099882', 'score': 0.39}, {'connected_gene': 'GC14M099754', 'score': 0.14}]
chr14	GH14I100165	100165085	100167600	1.46	[{'connected_gene': 'DEGS2', 'score': 550.77}, {'connected_gene': 'GC14M100159', 'score': 550.77}, {'connected_gene': 'CCNK', 'score': 13.59}, {'connected_gene': 'YY1', 'score': 9.82}, {'connected_gene': 'DLK1', 'score': 5.79}, {'connected_gene': 'SLC25A29', 'score': 5.22}]
chr14	GH14I100304	100304304	100307908	2.15	[{'connected_gene': 'SLC25A29', 'score': 570.23}, {'connected_gene': 'GC14P100308', 'score': 550.77}, {'connected_gene': 'MIR345', 'score': 550.77}, {'connected_gene': 'CCNK', 'score': 13.59}, {'connected_gene': 'YY1', 'score': 10.09}, {'connected_gene': 'MEG3', 'score': 4.42}, {'connected_gene': 'ENSG00000259052', 'score': 0.39}]
chr14	GH14I099531	99530218	99530253	0.51	[{'connected_gene': 'LOC105370661', 'score': 0.44}, {'connected_gene': 'GC14M099518', 'score': 0.44}, {'connected_gene': 'PIR34457', 'score': 0.39}, {'connected_gene': 'CCNK', 'score': 0.25}, {'connected_gene': 'CCDC85C', 'score': 0.19}]
chr14	GH14I099534	99534391	99535770	0.63	[{'connected_gene': 'LOC105370661', 'score': 550.77}, {'connected_gene': 'GC14M099518', 'score': 550.77}, {'connected_gene': 'PIR34457', 'score': 0.37}, {'connected_gene': 'CCNK', 'score': 0.23}, {'connected_gene': 'CCDC85C', 'score': 0.2}]
chr14	GH14I099502	99502357	99504315	0.58	[{'connected_gene': 'GC14M099501', 'score': 550.77}, {'connected_gene': 'CCNK', 'score': 11.29}, {'connected_gene': 'SETD3', 'score': 11.29}, {'connected_gene': 'ENSG00000247970', 'score': 10.61}, {'connected_gene': 'CCDC85C', 'score': 10.61}, {'connected_gene': 'ENSG00000258749', 'score': 0.44}]
chr14	GH14I099509	99509344	99509473	0.58	[{'connected_gene': 'ENSG00000258749', 'score': 0.77}, {'connected_gene': 'GC14M099501', 'score': 0.44}, {'connected_gene': 'CCNK', 'score': 0.31}, {'connected_gene': 'CCDC85C', 'score': 0.16}]
chr14	GH14I099510	99509004	99509113	0.8	[{'connected_gene': 'ENSG00000258749', 'score': 0.77}, {'connected_gene': 'GC14M099501', 'score': 0.44}, {'connected_gene': 'CCNK', 'score': 0.31}, {'connected_gene': 'CCDC85C', 'score': 0.15}]
chr14	GH14I099512	99511104	99512613	0.4	[{'connected_gene': 'ENSG00000258749', 'score': 550.77}, {'connected_gene': 'GC14M099501', 'score': 0.44}, {'connected_gene': 'CCNK', 'score': 0.29}, {'connected_gene': 'CCDC85C', 'score': 0.16}]
chr14	GH14I099511	99509571	99510306	0.38	[{'connected_gene': 'ENSG00000258749', 'score': 0.77}, {'connected_gene': 'GC14M099501', 'score': 0.44}, {'connected_gene': 'CCNK', 'score': 0.31}, {'connected_gene': 'CCDC85C', 'score': 0.16}]
chr14	GH14I100192	100192151	100194017	1.82	[{'connected_gene': 'GC14M100190', 'score': 550.77}, {'connected_gene': 'GC14M100192', 'score': 550.77}, {'connected_gene': 'GC14M100193', 'score': 550.77}, {'connected_gene': 'CCNK', 'score': 16.62}, {'connected_gene': 'DEGS2', 'score': 13.02}, {'connected_gene': 'YY1', 'score': 12.19}, {'connected_gene': 'MIR342', 'score': 10.92}, {'connected_gene': 'ENSG00000258666', 'score': 9.9}, {'connected_gene': 'EVL', 'score': 6.01}, {'connected_gene': 'SLC25A29', 'score': 5.71}, {'connected_gene': 'NDUFB3P4', 'score': 4.82}]
chr14	GH14I099516	99516394	99517309	0.46	[{'connected_gene': 'PIR34457', 'score': 550.77}, {'connected_gene': 'SETD3', 'score': 5.57}, {'connected_gene': 'LOC105370661', 'score': 0.37}, {'connected_gene': 'CCNK', 'score': 0.28}, {'connected_gene': 'CCDC85C', 'score': 0.17}]
chr14	GH14I099976	99976288	99977244	0.7	[{'connected_gene': 'ENSG00000258693', 'score': 550.77}, {'connected_gene': 'RPS2P3', 'score': 550.77}, {'connected_gene': 'YY1', 'score': 18.79}, {'connected_gene': 'CCNK', 'score': 13.6}, {'connected_gene': 'MEG3', 'score': 10.19}, {'connected_gene': 'ENSG00000247970', 'score': 10.17}, {'connected_gene': 'WDR25', 'score': 10.01}, {'connected_gene': 'HHIPL1', 'score': 10.01}, {'connected_gene': 'EVL', 'score': 0.44}]
chr14	GH14I099519	99519828	99520340	0.49	[{'connected_gene': 'PIR34457', 'score': 0.77}, {'connected_gene': 'LOC105370661', 'score': 0.37}, {'connected_gene': 'GC14M099518', 'score': 0.37}, {'connected_gene': 'CCNK', 'score': 0.28}, {'connected_gene': 'CCDC85C', 'score': 0.18}]
chr14	GH14I099518	99518504	99518673	1.01	[{'connected_gene': 'PIR34457', 'score': 0.77}, {'connected_gene': 'LOC105370661', 'score': 0.37}, {'connected_gene': 'GC14M099518', 'score': 0.37}, {'connected_gene': 'CCNK', 'score': 0.28}, {'connected_gene': 'CCDC85C', 'score': 0.17}]
chr14	GH14I099524	99524324	99525515	1.15	[{'connected_gene': 'PIR34457', 'score': 0.44}, {'connected_gene': 'LOC105370661', 'score': 0.39}, {'connected_gene': 'GC14M099518', 'score': 0.39}, {'connected_gene': 'CCNK', 'score': 0.26}, {'connected_gene': 'CCDC85C', 'score': 0.18}]
chr14	GH14I099520	99520884	99521013	0.69	[{'connected_gene': 'PIR34457', 'score': 0.77}, {'connected_gene': 'LOC105370661', 'score': 0.37}, {'connected_gene': 'GC14M099518', 'score': 0.37}, {'connected_gene': 'CCNK', 'score': 0.28}, {'connected_gene': 'CCDC85C', 'score': 0.18}]