PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368666	[[112375274, 112375608], [112382193, 112382491], [112385957, 112386200], [112389407, 112389601], [112390541, 112390889]]	[[112375560, 112375608], [112382193, 112382491], [112385957, 112386200], [112389407, 112389601], [112390541, 112390823]]
ENST00000230529	[[112375277, 112375364], [112375537, 112375608], [112382193, 112382491], [112385957, 112386200], [112389407, 112389601], [112390541, 112390883]]	[[112375560, 112375608], [112382193, 112382491], [112385957, 112386200], [112389407, 112389601], [112390541, 112390823]]
ENST00000454589	[[112375277, 112375364], [112375537, 112375608], [112382193, 112382491], [112385957, 112386200], [112388171, 112388235], [112389407, 112389601], [112390541, 112390889]]	[[112375560, 112375608], [112382193, 112382491], [112385957, 112386200], [112388171, 112388235], [112389407, 112389414]]
ENST00000604763	[[112375277, 112375373], [112375537, 112375608], [112382193, 112382491], [112385957, 112386200], [112389407, 112389601], [112390541, 112390889]]	[[112375560, 112375608], [112382193, 112382491], [112385957, 112386200], [112389407, 112389601], [112390541, 112390823]]
ENST00000483439	[[112375386, 112375608], [112375825, 112376093]]	None
ENST00000368664	[[112375422, 112375608], [112382193, 112382491], [112385957, 112386200], [112388171, 112388235], [112389407, 112389601], [112390541, 112390861]]	[[112375506, 112375608], [112382193, 112382491], [112385957, 112386200], [112388171, 112388235], [112389407, 112389414]]
ENST00000361714	[[112375461, 112375608], [112382193, 112382491], [112385957, 112386200], [112389407, 112389601], [112390541, 112392171]]	[[112375506, 112375608], [112382193, 112382491], [112385957, 112386200], [112389407, 112389601], [112390541, 112390823]]
ENST00000368663	[[112381215, 112381278], [112382274, 112382497], [112385966, 112386200], [112389407, 112389601], [112390541, 112390889]]	[[112381215, 112381278], [112382274, 112382497], [112385966, 112386200], [112389407, 112389601], [112390541, 112390823]]
ENST00000409166	[[112382481, 112382598], [112385957, 112386200], [112388171, 112388235], [112389407, 112389601], [112390541, 112390861]]	[[112389490, 112389601], [112390541, 112390823]]
NM_003880	[[112375277, 112375364], [112375537, 112375608], [112382193, 112382491], [112385957, 112386200], [112389407, 112389601], [112390541, 112390889]]	[[112375560, 112375608], [112382193, 112382491], [112385957, 112386200], [112389407, 112389601], [112390541, 112390823]]
NR_125354	[[112375277, 112375364], [112375537, 112375608], [112382193, 112382491], [112385957, 112386200], [112388171, 112388235], [112389407, 112389601], [112390541, 112390889]]	None
NM_198239	[[112375370, 112375608], [112382193, 112382491], [112385957, 112386200], [112389407, 112389601], [112390541, 112390889]]	[[112375506, 112375608], [112382193, 112382491], [112385957, 112386200], [112389407, 112389601], [112390541, 112390823]]
NR_125353	[[112375370, 112375608], [112382193, 112382491], [112385957, 112386200], [112388171, 112388235], [112389407, 112389601], [112390541, 112390889]]	None

Promoter

Chrom	Start	End	Description
chr6	112375300	112375334	CAGE_peak_1_at_WISP3_5end
chr6	112375516	112375536	CAGE_peak_2_at_WISP3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I112041	112041789	112046140	1.68	[{'connected_gene': 'WISP3', 'score': 23.08}, {'connected_gene': 'ENSG00000255389', 'score': 21.03}, {'connected_gene': 'FAM229B', 'score': 15.28}, {'connected_gene': 'TRAF3IP2-AS1', 'score': 14.4}, {'connected_gene': 'TUBE1', 'score': 10.76}, {'connected_gene': 'FYN', 'score': 8.09}, {'connected_gene': 'TRAF3IP2', 'score': 1.84}, {'connected_gene': 'GC06M111982', 'score': 0.21}]
chr6	GH06I112115	112115591	112118657	0.6	[{'connected_gene': 'WISP3', 'score': 17.43}, {'connected_gene': 'FAM229B', 'score': 17.3}, {'connected_gene': 'ENSG00000237234', 'score': 11.66}, {'connected_gene': 'TUBE1', 'score': 11.02}, {'connected_gene': 'ENSG00000255389', 'score': 4.27}, {'connected_gene': 'LAMA4', 'score': 0.12}]
chr6	GH06I112112	112112718	112115424	0.56	[{'connected_gene': 'WISP3', 'score': 19.22}, {'connected_gene': 'FAM229B', 'score': 18.75}, {'connected_gene': 'ENSG00000237234', 'score': 11.64}, {'connected_gene': 'TUBE1', 'score': 11.02}, {'connected_gene': 'RNU6-1226P', 'score': 9.99}, {'connected_gene': 'LAMA4', 'score': 9.92}, {'connected_gene': 'LOC100128588', 'score': 9.64}]
chr6	GH06I112107	112107504	112107531	0.22	[{'connected_gene': 'WISP3', 'score': 19.2}, {'connected_gene': 'FAM229B', 'score': 11.1}, {'connected_gene': 'LAMA4', 'score': 1.65}, {'connected_gene': 'TUBE1', 'score': 0.37}, {'connected_gene': 'ENSG00000237234', 'score': 0.25}]
chr6	GH06I112036	112036591	112040724	1.34	[{'connected_gene': 'WISP3', 'score': 21.07}, {'connected_gene': 'FAM229B', 'score': 15.91}, {'connected_gene': 'TRAF3IP2', 'score': 15.26}, {'connected_gene': 'FYN', 'score': 11.23}, {'connected_gene': 'TUBE1', 'score': 10.74}, {'connected_gene': 'GC06M111982', 'score': 0.22}]
chr6	GH06I112048	112048268	112050420	0.43	[{'connected_gene': 'WISP3', 'score': 23.41}, {'connected_gene': 'ENSG00000255389', 'score': 6.02}, {'connected_gene': 'FAM229B', 'score': 4.46}, {'connected_gene': 'GC06M111982', 'score': 0.2}]
chr6	GH06I112054	112054055	112054114	0.61	[{'connected_gene': 'WISP3', 'score': 574.6}, {'connected_gene': 'FAM229B', 'score': 0.29}]
chr6	GH06I112135	112135683	112138034	0.2	[{'connected_gene': 'WISP3', 'score': 14.35}, {'connected_gene': 'ENSG00000255389', 'score': 6.07}, {'connected_gene': 'ENSG00000237234', 'score': 0.37}, {'connected_gene': 'TUBE1', 'score': 0.25}, {'connected_gene': 'LAMA4', 'score': 0.13}]
chr6	GH06I112030	112030337	112031061	0.74	[{'connected_gene': 'WISP3', 'score': 0.34}, {'connected_gene': 'GC06M111982', 'score': 0.25}]
chr6	GH06I112086	112086401	112088400	2	[{'connected_gene': 'TUBE1', 'score': 550.77}, {'connected_gene': 'FAM229B', 'score': 550.77}, {'connected_gene': 'WISP3', 'score': 22.3}, {'connected_gene': 'ENSG00000237234', 'score': 10.93}]
chr6	GH06I112026	112026781	112030173	1.43	[{'connected_gene': 'FYN', 'score': 19.73}, {'connected_gene': 'TRAF3IP2-AS1', 'score': 10.45}, {'connected_gene': 'WISP3', 'score': 4.81}, {'connected_gene': 'GC06M111982', 'score': 0.25}]
chr6	GH06I112033	112033358	112034812	0.49	[{'connected_gene': 'FYN', 'score': 11.22}, {'connected_gene': 'TUBE1', 'score': 10.42}, {'connected_gene': 'FAM229B', 'score': 10.42}, {'connected_gene': 'TRAF3IP2', 'score': 10.28}, {'connected_gene': 'WISP3', 'score': 5.5}, {'connected_gene': 'GC06M111982', 'score': 0.23}]
chr6	GH06I111992	111992320	111994278	1.31	[{'connected_gene': 'FYN', 'score': 14.12}, {'connected_gene': 'TRAF3IP2', 'score': 3.55}, {'connected_gene': 'GC06M111982', 'score': 0.39}, {'connected_gene': 'WISP3', 'score': 0.21}]
chr6	GH06I112003	112003270	112008719	1.26	[{'connected_gene': 'TRAF3IP2', 'score': 1.83}, {'connected_gene': 'GC06M111982', 'score': 0.34}, {'connected_gene': 'WISP3', 'score': 0.25}]
chr6	GH06I112015	112015659	112017439	1.25	[{'connected_gene': 'TRAF3IP2', 'score': 3.88}, {'connected_gene': 'FYN', 'score': 1.25}, {'connected_gene': 'GC06M111982', 'score': 0.29}, {'connected_gene': 'WISP3', 'score': 0.28}]
chr6	GH06I112035	112035414	112035804	0.5	[{'connected_gene': 'TRAF3IP2', 'score': 11.72}, {'connected_gene': 'FYN', 'score': 11.22}, {'connected_gene': 'TUBE1', 'score': 10.42}, {'connected_gene': 'FAM229B', 'score': 10.42}, {'connected_gene': 'WISP3', 'score': 0.37}, {'connected_gene': 'GC06M111982', 'score': 0.23}]
chr6	GH06I112013	112013908	112015464	0.86	[{'connected_gene': 'LINC02527', 'score': 4.36}, {'connected_gene': 'GC06M111982', 'score': 0.29}, {'connected_gene': 'WISP3', 'score': 0.28}]
chr6	GH06I112324	112324817	112326490	0.31	[{'connected_gene': 'LOC100128588', 'score': 550.77}, {'connected_gene': 'GC06M112326', 'score': 550.77}, {'connected_gene': 'WISP3', 'score': 4.43}, {'connected_gene': 'GC06M112324', 'score': 0.77}, {'connected_gene': 'LAMA4', 'score': 0.19}, {'connected_gene': 'ENSG00000281613', 'score': 0.17}]
chr6	GH06I111988	111988788	111990874	0.72	[{'connected_gene': 'GC06M111982', 'score': 0.44}, {'connected_gene': 'WISP3', 'score': 0.21}]
chr6	GH06I112014	112013072	112013416	0.53	[{'connected_gene': 'GC06M111982', 'score': 0.29}, {'connected_gene': 'WISP3', 'score': 0.26}]
chr6	GH06I112119	112119111	112120717	0.2	[{'connected_gene': 'ENSG00000237234', 'score': 11.08}, {'connected_gene': 'TUBE1', 'score': 10.81}, {'connected_gene': 'FAM229B', 'score': 10.81}, {'connected_gene': 'WISP3', 'score': 5.66}, {'connected_gene': 'LAMA4', 'score': 0.12}]
chr6	GH06I111996	111996066	111998915	1.33	[{'connected_gene': 'ENSG00000220506', 'score': 11.57}, {'connected_gene': 'FYN', 'score': 11.27}, {'connected_gene': 'LINC02527', 'score': 4.98}, {'connected_gene': 'GC06M111982', 'score': 0.39}, {'connected_gene': 'WISP3', 'score': 0.22}]
chr6	GH06I112018	112018175	112020040	1.38	[{'connected_gene': 'ENSG00000237234', 'score': 4.47}, {'connected_gene': 'LINC02527', 'score': 4.36}, {'connected_gene': 'WISP3', 'score': 0.29}, {'connected_gene': 'GC06M111982', 'score': 0.28}]
chr6	GH06I111984	111984036	111987607	1.34	[{'connected_gene': 'ENSG00000255389', 'score': 5.23}, {'connected_gene': 'LINC02527', 'score': 5.16}, {'connected_gene': 'TRAF3IP2', 'score': 3.61}, {'connected_gene': 'LOC105377947', 'score': 0.77}, {'connected_gene': 'GC06M111982', 'score': 0.77}, {'connected_gene': 'WISP3', 'score': 0.2}]
chr6	GH06I112231	112231251	112238449	1.56	[{'connected_gene': 'ENSG00000226440', 'score': 557.7}, {'connected_gene': 'ENSG00000271208', 'score': 550.77}, {'connected_gene': 'ENSG00000281613', 'score': 550.77}, {'connected_gene': 'LOC101927640', 'score': 550.77}, {'connected_gene': 'LAMA4', 'score': 11.31}, {'connected_gene': 'LOC100128588', 'score': 10.17}, {'connected_gene': 'WISP3', 'score': 5.5}]