PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NM_003890	[[40353962, 40354136], [40354260, 40354532], [40357376, 40357760], [40360855, 40361055], [40362717, 40363291], [40363863, 40364435], [40366027, 40366571], [40367297, 40367914], [40368302, 40368876], [40370194, 40370532], [40373944, 40374086], [40376312, 40376512], [40376630, 40377225], [40380118, 40380711], [40382282, 40382826], [40383550, 40384167], [40384561, 40385135], [40386445, 40386783], [40389651, 40389793], [40391997, 40392197], [40392315, 40392910], [40395803, 40396396], [40397966, 40398510], [40399238, 40399855], [40400249, 40400823], [40402133, 40402471], [40405918, 40406060], [40407935, 40408135], [40408253, 40408848], [40411637, 40412230], [40419596, 40420164], [40421091, 40421696], [40423978, 40424549], [40430289, 40430639], [40432965, 40434213], [40440470, 40440533]]	[[40354126, 40354136], [40354260, 40354532], [40357376, 40357760], [40360855, 40361055], [40362717, 40363291], [40363863, 40364435], [40366027, 40366571], [40367297, 40367914], [40368302, 40368876], [40370194, 40370532], [40373944, 40374086], [40376312, 40376512], [40376630, 40377225], [40380118, 40380711], [40382282, 40382826], [40383550, 40384167], [40384561, 40385135], [40386445, 40386783], [40389651, 40389793], [40391997, 40392197], [40392315, 40392910], [40395803, 40396396], [40397966, 40398510], [40399238, 40399855], [40400249, 40400823], [40402133, 40402471], [40405918, 40406060], [40407935, 40408135], [40408253, 40408848], [40411637, 40412230], [40419596, 40420164], [40421091, 40421696], [40423978, 40424549], [40430289, 40430639], [40432965, 40434213], [40440470, 40440525]]

Promoter

Chrom	Start	End	Description
chr19	40440535	40440541	CAGE_peak_1_at_FCGBP_5end
chr19	40440897	40440908	CAGE_peak_2_at_FCGBP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I039960	39960190	39960500	0.54	[{'connected_gene': 'FCGBP', 'score': 12.09}, {'connected_gene': 'ZNF546', 'score': 2.95}, {'connected_gene': 'GC19P039957', 'score': 0.77}, {'connected_gene': 'PIR61583', 'score': 0.44}]
chr19	GH19I039933	39933972	39937839	1.09	[{'connected_gene': 'FCGBP', 'score': 563.44}, {'connected_gene': 'ZNF780A', 'score': 18.26}, {'connected_gene': 'AKT2', 'score': 15.07}, {'connected_gene': 'ZNF780B', 'score': 14.75}, {'connected_gene': 'ENSG00000269843', 'score': 12.13}, {'connected_gene': 'SNRPA', 'score': 11.83}, {'connected_gene': 'PSMC4', 'score': 10.87}, {'connected_gene': 'RN7SL566P', 'score': 10.69}, {'connected_gene': 'FBL', 'score': 10.58}, {'connected_gene': 'TTC9B', 'score': 9.98}, {'connected_gene': 'CNTD2', 'score': 9.98}, {'connected_gene': 'PRR13P5', 'score': 0.44}]
chr19	GH19I039881	39881091	39882200	1	[{'connected_gene': 'FCGBP', 'score': 9.14}, {'connected_gene': 'GC19P039887', 'score': 0.44}, {'connected_gene': 'FBL', 'score': 0.28}]
chr19	GH19I039950	39950678	39954486	1.2	[{'connected_gene': 'FCGBP', 'score': 29.16}, {'connected_gene': 'ZNF780B', 'score': 12.03}, {'connected_gene': 'AKT2', 'score': 11.1}, {'connected_gene': 'FBL', 'score': 10.87}, {'connected_gene': 'ZNF780A', 'score': 4.53}, {'connected_gene': 'ZNF546', 'score': 3.12}, {'connected_gene': 'GC19P039957', 'score': 0.77}, {'connected_gene': 'PRR13P5', 'score': 0.44}]
chr19	GH19I039920	39920054	39920163	0.46	[{'connected_gene': 'FCGBP', 'score': 0.39}, {'connected_gene': 'GC19M039890', 'score': 0.31}]
chr19	GH19I039897	39897344	39898440	0.78	[{'connected_gene': 'FCGBP', 'score': 9.66}, {'connected_gene': 'GC19M039890', 'score': 0.44}]
chr19	GH19I039908	39908042	39908377	0.24	[{'connected_gene': 'SUPT5H', 'score': 1.37}, {'connected_gene': 'GC19M039890', 'score': 0.37}, {'connected_gene': 'FCGBP', 'score': 0.31}]
chr19	GH19I039969	39969010	39972613	2.32	[{'connected_gene': 'PSMC4', 'score': 561.37}, {'connected_gene': 'GC19M039967', 'score': 550.77}, {'connected_gene': 'ZNF780A', 'score': 39.64}, {'connected_gene': 'FCGBP', 'score': 26.58}, {'connected_gene': 'AKT2', 'score': 25.27}, {'connected_gene': 'ENSG00000269843', 'score': 21.97}, {'connected_gene': 'SNRPA', 'score': 11.84}, {'connected_gene': 'RN7SL566P', 'score': 10.69}, {'connected_gene': 'FBL', 'score': 10.54}, {'connected_gene': 'FBXO17', 'score': 9.8}, {'connected_gene': 'PRX', 'score': 7.58}, {'connected_gene': 'SUPT5H', 'score': 5.51}, {'connected_gene': 'ENSG00000268366', 'score': 5.07}, {'connected_gene': 'ENSG00000269069', 'score': 4.59}, {'connected_gene': 'PIR61583', 'score': 0.77}, {'connected_gene': 'GC19M039966', 'score': 0.08}]
chr19	GH19I039940	39940146	39946863	1.34	[{'connected_gene': 'PRR13P5', 'score': 550.77}, {'connected_gene': 'FCGBP', 'score': 35.8}, {'connected_gene': 'ZNF780A', 'score': 24.88}, {'connected_gene': 'PSMC4', 'score': 12.31}, {'connected_gene': 'SNRPA', 'score': 11.54}, {'connected_gene': 'FBL', 'score': 10.37}, {'connected_gene': 'ENSG00000269843', 'score': 10.19}, {'connected_gene': 'CNTD2', 'score': 9.73}, {'connected_gene': 'TTC9B', 'score': 9.73}, {'connected_gene': 'COQ8B', 'score': 9.72}, {'connected_gene': 'ZNF546', 'score': 2.89}, {'connected_gene': 'SERTAD1', 'score': 1.32}]
chr19	GH19I040190	40190074	40192401	2.28	[{'connected_gene': 'MAP3K10', 'score': 559.26}, {'connected_gene': 'ZNF780B', 'score': 45.96}, {'connected_gene': 'NUMBL', 'score': 37.89}, {'connected_gene': 'CYP2G1P', 'score': 31.54}, {'connected_gene': 'EID2B', 'score': 28.78}, {'connected_gene': 'SUPT5H', 'score': 18.22}, {'connected_gene': 'AKT2', 'score': 15.17}, {'connected_gene': 'PAF1', 'score': 13.11}, {'connected_gene': 'TTC9B', 'score': 12.48}, {'connected_gene': 'CNTD2', 'score': 12.17}, {'connected_gene': 'ENSG00000269843', 'score': 12.14}, {'connected_gene': 'ZNF546', 'score': 12.05}, {'connected_gene': 'SNRPA', 'score': 11.84}, {'connected_gene': 'ZNF780A', 'score': 10.88}, {'connected_gene': 'RN7SL566P', 'score': 10.68}, {'connected_gene': 'PSMC4', 'score': 10.67}, {'connected_gene': 'FBL', 'score': 10.47}, {'connected_gene': 'HIPK4', 'score': 10.42}, {'connected_gene': 'ENSG00000206925', 'score': 10.1}, {'connected_gene': 'C19orf47', 'score': 10.1}, {'connected_gene': 'PLD3', 'score': 10.1}, {'connected_gene': 'FCGBP', 'score': 5.32}, {'connected_gene': 'SERTAD1', 'score': 2.17}, {'connected_gene': 'GC19M039966', 'score': 0.31}]
chr19	GH19I039995	39995856	39998743	2.3	[{'connected_gene': 'ZNF546', 'score': 570.97}, {'connected_gene': 'GC19M039992', 'score': 550.77}, {'connected_gene': 'CYP2G1P', 'score': 39.12}, {'connected_gene': 'SNRPA', 'score': 37.69}, {'connected_gene': 'FBL', 'score': 34.75}, {'connected_gene': 'ZNF780B', 'score': 31.3}, {'connected_gene': 'SUPT5H', 'score': 30.74}, {'connected_gene': 'FCGBP', 'score': 26.51}, {'connected_gene': 'ENSG00000269843', 'score': 23.89}, {'connected_gene': 'PAK4', 'score': 23.03}, {'connected_gene': 'PLEKHG2', 'score': 21.83}, {'connected_gene': 'EID2B', 'score': 21.55}, {'connected_gene': 'SAMD4B', 'score': 19.8}, {'connected_gene': 'SPTBN4', 'score': 12.85}, {'connected_gene': 'PSMC4', 'score': 12.59}, {'connected_gene': 'PAF1', 'score': 11.62}, {'connected_gene': 'RN7SL566P', 'score': 11.36}, {'connected_gene': 'NUMBL', 'score': 11.28}, {'connected_gene': 'ENSG00000268366', 'score': 10.8}, {'connected_gene': 'EID2', 'score': 10.28}, {'connected_gene': 'SERTAD3', 'score': 10.27}, {'connected_gene': 'CNTD2', 'score': 10.03}, {'connected_gene': 'TTC9B', 'score': 10.03}, {'connected_gene': 'COQ8B', 'score': 9.9}, {'connected_gene': 'ITPKC', 'score': 9.88}, {'connected_gene': 'RPS16', 'score': 9.69}, {'connected_gene': 'LTBP4', 'score': 9.67}, {'connected_gene': 'C19orf54', 'score': 4.77}, {'connected_gene': 'ENSG00000269069', 'score': 4.74}, {'connected_gene': 'PIR39291', 'score': 0.44}, {'connected_gene': 'GC19P040008', 'score': 0.44}, {'connected_gene': 'GC19M039966', 'score': 0.1}]
chr19	GH19I040143	40143254	40145874	0.88	[{'connected_gene': 'ZNF780A', 'score': 33.58}, {'connected_gene': 'FCGBP', 'score': 24.54}, {'connected_gene': 'PAF1', 'score': 13.11}, {'connected_gene': 'NUMBL', 'score': 10.01}, {'connected_gene': 'SUPT5H', 'score': 9.77}, {'connected_gene': 'GC19M040148', 'score': 0.44}, {'connected_gene': 'GC19M039966', 'score': 0.37}, {'connected_gene': 'VN1R96P', 'score': 0.34}]
chr19	GH19I039892	39892743	39894602	0.2	[{'connected_gene': 'IFNL3', 'score': 5.24}, {'connected_gene': 'GC19M039890', 'score': 0.77}, {'connected_gene': 'FCGBP', 'score': 0.26}]
chr19	GH19I039968	39968042	39968311	0.57	[{'connected_gene': 'PIR61583', 'score': 550.77}, {'connected_gene': 'FCGBP', 'score': 48.09}, {'connected_gene': 'ZNF546', 'score': 3.15}, {'connected_gene': 'GC19M039967', 'score': 0.77}, {'connected_gene': 'GC19P039957', 'score': 0.39}, {'connected_gene': 'GC19M039966', 'score': 0.08}]
chr19	GH19I040005	40005618	40007103	1.03	[{'connected_gene': 'PIR39291', 'score': 550.77}, {'connected_gene': 'GC19P040008', 'score': 550.77}, {'connected_gene': 'FCGBP', 'score': 26.5}, {'connected_gene': 'ZNF780B', 'score': 15.03}, {'connected_gene': 'NUMBL', 'score': 11.23}, {'connected_gene': 'CYP2G1P', 'score': 11.04}, {'connected_gene': 'PAK4', 'score': 10.85}, {'connected_gene': 'EID2B', 'score': 10.14}, {'connected_gene': 'PIR41450', 'score': 0.44}, {'connected_gene': 'ZNF546', 'score': 0.34}, {'connected_gene': 'GC19M039966', 'score': 0.1}]
chr19	GH19I039909	39909614	39909763	0.59	[{'connected_gene': 'GC19M039890', 'score': 0.37}, {'connected_gene': 'FCGBP', 'score': 0.34}]
chr19	GH19I040161	40161616	40162481	0.56	[{'connected_gene': 'GC19M039966', 'score': 550.77}, {'connected_gene': 'PAF1', 'score': 13.11}, {'connected_gene': 'TTC9B', 'score': 11.84}, {'connected_gene': 'CNTD2', 'score': 11.54}, {'connected_gene': 'NUMBL', 'score': 10.01}, {'connected_gene': 'SUPT5H', 'score': 9.77}, {'connected_gene': 'ZNF780A', 'score': 9.6}, {'connected_gene': 'FCGBP', 'score': 8.42}, {'connected_gene': 'PIR31992', 'score': 0.77}, {'connected_gene': 'GC19M040160', 'score': 0.77}]
chr19	GH19I039874	39874641	39874710	0.49	[{'connected_gene': 'GC19P039887', 'score': 0.39}, {'connected_gene': 'FBL', 'score': 0.31}, {'connected_gene': 'FCGBP', 'score': 0.22}]
chr19	GH19I040162	40162619	40164029	0.64	[{'connected_gene': 'GC19M039966', 'score': 550.77}, {'connected_gene': 'TTC9B', 'score': 11.84}, {'connected_gene': 'CNTD2', 'score': 11.55}, {'connected_gene': 'FCGBP', 'score': 9.81}, {'connected_gene': 'ZNF780A', 'score': 9.6}, {'connected_gene': 'MAP3K10', 'score': 5.36}]