PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000295589	[[26483021, 26483792], [26484777, 26484905], [26487258, 26487520], [26490854, 26491106], [26491777, 26492084]]	[[26483259, 26483792], [26484777, 26484905], [26487258, 26487520], [26490854, 26491106], [26491777, 26491889]]
NM_000730	[[26483017, 26483792], [26484777, 26484905], [26487258, 26487520], [26490854, 26491106], [26491777, 26492042]]	[[26483259, 26483792], [26484777, 26484905], [26487258, 26487520], [26490854, 26491106], [26491777, 26491889]]

Promoter

Chrom	Start	End	Description
chr4	26491909	26491918	CAGE_peak_2_at_CCKAR_5end
chr4	26492048	26492059	CAGE_peak_3_at_CCKAR_5end
chr4	26492076	26492113	CAGE_peak_1_at_CCKAR_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I026781	26781904	26783234	0.93	[{'connected_gene': 'CCKAR', 'score': 9.81}, {'connected_gene': 'GC04P026778', 'score': 0.77}, {'connected_gene': 'STIM2', 'score': 0.18}]
chr4	GH04I026819	26819059	26819228	0.31	[{'connected_gene': 'CCKAR', 'score': 9.91}, {'connected_gene': 'STIM2', 'score': 0.28}, {'connected_gene': 'GC04P026778', 'score': 0.26}]
chr4	GH04I026687	26687184	26688779	0.31	[{'connected_gene': 'CCKAR', 'score': 9.74}, {'connected_gene': 'TBC1D19', 'score': 6.55}, {'connected_gene': 'PIR55333', 'score': 0.44}, {'connected_gene': 'GC04P026702', 'score': 0.39}]
chr4	GH04I026529	26529004	26530805	0.31	[{'connected_gene': 'CCKAR', 'score': 12.03}, {'connected_gene': 'TBC1D19', 'score': 11.51}, {'connected_gene': 'GC04M026372', 'score': 0.44}]
chr4	GH04I026580	26580209	26581288	0.31	[{'connected_gene': 'CCKAR', 'score': 10.21}, {'connected_gene': 'TBC1D19', 'score': 0.77}, {'connected_gene': 'PIR55333', 'score': 0.15}]
chr4	GH04I026594	26594182	26595062	0.65	[{'connected_gene': 'CCKAR', 'score': 9.75}, {'connected_gene': 'TBC1D19', 'score': 0.37}, {'connected_gene': 'PIR55333', 'score': 0.17}]
chr4	GH04I026374	26374477	26376582	0.2	[{'connected_gene': 'CCKAR', 'score': 6.35}, {'connected_gene': 'GC04P026432', 'score': 0.22}, {'connected_gene': 'LOC105374542', 'score': 0.18}, {'connected_gene': 'GC04M026372', 'score': 0.11}, {'connected_gene': 'RBPJ', 'score': 0.08}]
chr4	GH04I026369	26369177	26370058	0.49	[{'connected_gene': 'CCKAR', 'score': 6.22}, {'connected_gene': 'GC04P026432', 'score': 0.21}, {'connected_gene': 'LOC105374542', 'score': 0.19}, {'connected_gene': 'RBPJ', 'score': 0.08}]
chr4	GH04I026361	26361387	26362821	0.38	[{'connected_gene': 'CCKAR', 'score': 6.21}, {'connected_gene': 'LOC105374542', 'score': 0.21}, {'connected_gene': 'GC04P026432', 'score': 0.19}, {'connected_gene': 'RBPJ', 'score': 0.08}]
chr4	GH04I026348	26348603	26349912	0.31	[{'connected_gene': 'CCKAR', 'score': 4.61}, {'connected_gene': 'LOC105374542', 'score': 0.23}, {'connected_gene': 'GC04P026432', 'score': 0.18}, {'connected_gene': 'RBPJ', 'score': 0.09}]
chr4	GH04I026345	26345601	26346612	0.97	[{'connected_gene': 'CCKAR', 'score': 6.16}, {'connected_gene': 'LOC105374542', 'score': 0.25}, {'connected_gene': 'GC04P026432', 'score': 0.17}, {'connected_gene': 'RBPJ', 'score': 0.09}]
chr4	GH04I026359	26359400	26359801	1.07	[{'connected_gene': 'CCKAR', 'score': 6.0}, {'connected_gene': 'LOC105374542', 'score': 0.21}, {'connected_gene': 'GC04P026432', 'score': 0.19}, {'connected_gene': 'RBPJ', 'score': 0.08}]
chr4	GH04I026341	26341201	26343743	1.29	[{'connected_gene': 'CCKAR', 'score': 4.99}, {'connected_gene': 'LOC105374542', 'score': 0.26}, {'connected_gene': 'GC04P026432', 'score': 0.16}, {'connected_gene': 'RBPJ', 'score': 0.1}]
chr4	GH04I026355	26355802	26356527	0.51	[{'connected_gene': 'CCKAR', 'score': 15.6}, {'connected_gene': 'LOC105374542', 'score': 0.22}, {'connected_gene': 'GC04P026432', 'score': 0.18}, {'connected_gene': 'RBPJ', 'score': 0.08}]
chr4	GH04I026458	26458983	26460506	0.87	[{'connected_gene': 'CCKAR', 'score': 25.82}, {'connected_gene': 'GC04P026432', 'score': 0.31}, {'connected_gene': 'GC04M026372', 'score': 0.2}]
chr4	GH04I026457	26457602	26458759	0.58	[{'connected_gene': 'CCKAR', 'score': 10.66}, {'connected_gene': 'GC04P026432', 'score': 0.31}, {'connected_gene': 'GC04M026372', 'score': 0.2}]
chr4	GH04I026461	26461969	26463665	0.43	[{'connected_gene': 'CCKAR', 'score': 12.09}, {'connected_gene': 'GC04P026432', 'score': 0.31}, {'connected_gene': 'GC04M026372', 'score': 0.21}]
chr4	GH04I026490	26490421	26490480	0.5	[{'connected_gene': 'CCKAR', 'score': 550.77}, {'connected_gene': 'GC04M026372', 'score': 0.29}, {'connected_gene': 'GC04P026432', 'score': 0.22}]
chr4	GH04I026500	26500619	26500848	0.7	[{'connected_gene': 'CCKAR', 'score': 5.53}, {'connected_gene': 'GC04M026372', 'score': 0.34}]
chr4	GH04I026501	26500859	26501008	0.64	[{'connected_gene': 'CCKAR', 'score': 0.39}, {'connected_gene': 'GC04M026372', 'score': 0.34}]
chr4	GH04I026014	26014270	26016830	0.85	[{'connected_gene': 'STIM2', 'score': 4.22}, {'connected_gene': 'CCKAR', 'score': 1.72}, {'connected_gene': 'LINC02357', 'score': 0.22}, {'connected_gene': 'PIR49686', 'score': 0.16}]
chr4	GH04I026477	26477576	26477641	0.22	[{'connected_gene': 'TBC1D19', 'score': 10.3}, {'connected_gene': 'CCKAR', 'score': 0.39}, {'connected_gene': 'GC04P026432', 'score': 0.26}, {'connected_gene': 'GC04M026372', 'score': 0.25}]
chr4	GH04I026605	26605872	26609057	0.31	[{'connected_gene': 'TBC1D19', 'score': 17.25}, {'connected_gene': 'CCKAR', 'score': 10.08}, {'connected_gene': 'PIR55333', 'score': 0.19}]
chr4	GH04I026503	26503666	26504542	0.31	[{'connected_gene': 'TBC1D19', 'score': 10.75}, {'connected_gene': 'CCKAR', 'score': 0.39}, {'connected_gene': 'GC04M026372', 'score': 0.34}]
chr4	GH04I026647	26647624	26648582	0.52	[{'connected_gene': 'TBC1D19', 'score': 14.57}, {'connected_gene': 'CCKAR', 'score': 9.62}, {'connected_gene': 'PIR55333', 'score': 0.29}]
chr4	GH04I026603	26603195	26604355	0.2	[{'connected_gene': 'TBC1D19', 'score': 15.5}, {'connected_gene': 'CCKAR', 'score': 10.09}, {'connected_gene': 'PIR55333', 'score': 0.18}]
chr4	GH04I026318	26318361	26324391	2.3	[{'connected_gene': 'RBPJ', 'score': 550.1}, {'connected_gene': 'CCKAR', 'score': 4.45}, {'connected_gene': 'LOC105374542', 'score': 0.34}, {'connected_gene': 'GC04P026432', 'score': 0.14}]
chr4	GH04I026963	26963833	26966050	0.2	[{'connected_gene': 'LOC105374546', 'score': 9.87}, {'connected_gene': 'STIM2', 'score': 9.68}, {'connected_gene': 'CCKAR', 'score': 9.03}, {'connected_gene': 'GC04P026973', 'score': 0.44}, {'connected_gene': 'LOC100421493', 'score': 0.16}]
chr4	GH04I026524	26524857	26525802	0.31	[{'connected_gene': 'GC04M026372', 'score': 550.77}, {'connected_gene': 'CCKAR', 'score': 11.59}, {'connected_gene': 'TBC1D19', 'score': 10.72}]
chr4	GH04I026434	26434379	26434528	0.43	[{'connected_gene': 'GC04P026432', 'score': 550.77}, {'connected_gene': 'CCKAR', 'score': 0.22}, {'connected_gene': 'GC04M026372', 'score': 0.16}, {'connected_gene': 'RBPJ', 'score': 0.06}]
chr4	GH04I026452	26452659	26453613	0.56	[{'connected_gene': 'GC04P026432', 'score': 0.34}, {'connected_gene': 'CCKAR', 'score': 0.28}, {'connected_gene': 'GC04M026372', 'score': 0.19}]
chr4	GH04I026509	26509426	26511089	0.2	[{'connected_gene': 'GC04M026372', 'score': 0.39}, {'connected_gene': 'CCKAR', 'score': 0.37}]