PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000284523	[[228194751, 228194900], [228210367, 228210609], [228238356, 228238622], [228246686, 228248961]]	[[228194829, 228194900], [228210367, 228210609], [228238356, 228238622], [228246686, 228247166]]
ENST00000366753	[[228194782, 228194900], [228210367, 228210609], [228238356, 228238622], [228246686, 228247162], [228247902, 228248168]]	[[228194829, 228194900], [228210367, 228210609], [228238356, 228238622], [228246686, 228247162], [228247902, 228248005]]
NM_033131	[[228194722, 228194900], [228210367, 228210609], [228238356, 228238622], [228246686, 228248972]]	[[228194829, 228194900], [228210367, 228210609], [228238356, 228238622], [228246686, 228247166]]

Promoter

Chrom	Start	End	Description
chr1	228194693	228194705	CAGE_peak_2_at_WNT3A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I227761	227761522	227764970	1.35	[{'connected_gene': 'WNT3A', 'score': 10.02}, {'connected_gene': 'SNAP47', 'score': 6.19}, {'connected_gene': 'SNAP47-AS1', 'score': 0.37}, {'connected_gene': 'LOC105373289', 'score': 0.34}]
chr1	GH01I227758	227758540	227760855	0.77	[{'connected_gene': 'WNT3A', 'score': 9.8}, {'connected_gene': 'SNAP47', 'score': 6.54}, {'connected_gene': 'SNAP47-AS1', 'score': 0.39}, {'connected_gene': 'LOC105373289', 'score': 0.31}]
chr1	GH01I228006	228006949	228007008	0.82	[{'connected_gene': 'WNT3A', 'score': 550.77}, {'connected_gene': 'SEPT14P17', 'score': 0.31}]
chr1	GH01I227909	227909806	227911606	0.83	[{'connected_gene': 'WNT3A', 'score': 16.55}, {'connected_gene': 'MIR5008', 'score': 0.29}, {'connected_gene': 'PRSS38', 'score': 0.15}]
chr1	GH01I228013	228013400	228013549	0.31	[{'connected_gene': 'WNT3A', 'score': 0.44}, {'connected_gene': 'GC01P228076', 'score': 0.21}]
chr1	GH01I228059	228059095	228061281	0.95	[{'connected_gene': 'OBSCN', 'score': 18.38}, {'connected_gene': 'ARF1', 'score': 12.76}, {'connected_gene': 'WNT3A', 'score': 11.82}, {'connected_gene': 'OBSCN-AS1', 'score': 7.99}, {'connected_gene': 'GC01P228076', 'score': 0.37}]
chr1	GH01I227942	227942741	227948692	2.17	[{'connected_gene': 'WNT9A', 'score': 550.77}, {'connected_gene': 'OBSCN-AS1', 'score': 12.89}, {'connected_gene': 'WNT3A', 'score': 10.94}, {'connected_gene': 'OBSCN', 'score': 9.02}, {'connected_gene': 'IBA57', 'score': 7.69}, {'connected_gene': 'ENSG00000269934', 'score': 6.71}, {'connected_gene': 'MRPL55', 'score': 4.16}, {'connected_gene': 'MIR5008', 'score': 0.77}]
chr1	GH01I228014	228014152	228015524	0.56	[{'connected_gene': 'OBSCN-AS1', 'score': 6.38}, {'connected_gene': 'OBSCN', 'score': 5.9}, {'connected_gene': 'ENSG00000269934', 'score': 4.36}, {'connected_gene': 'WNT3A', 'score': 0.44}, {'connected_gene': 'GC01P228076', 'score': 0.21}]
chr1	GH01I228781	228781194	228784931	1.7	[{'connected_gene': 'NUP133', 'score': 144.13}, {'connected_gene': 'CICP26', 'score': 125.89}, {'connected_gene': 'C1orf35', 'score': 96.4}, {'connected_gene': 'ENSG00000269890', 'score': 51.26}, {'connected_gene': 'HMGN2P19', 'score': 32.32}, {'connected_gene': 'ABCB10', 'score': 28.22}, {'connected_gene': 'HIST3H3', 'score': 27.97}, {'connected_gene': 'TAF5L', 'score': 27.68}, {'connected_gene': 'URB2', 'score': 16.08}, {'connected_gene': 'LOC105373159', 'score': 11.9}, {'connected_gene': 'MRPL55', 'score': 10.4}, {'connected_gene': 'TMEM78', 'score': 9.91}, {'connected_gene': 'RHOU', 'score': 6.46}, {'connected_gene': 'WNT3A', 'score': 5.45}, {'connected_gene': 'LOC100421842', 'score': 0.44}, {'connected_gene': 'GC01M228858', 'score': 0.37}]
chr1	GH01I228445	228445521	228446654	1.17	[{'connected_gene': 'TRIM17', 'score': 16.97}, {'connected_gene': 'OBSCN', 'score': 16.3}, {'connected_gene': 'TRIM11', 'score': 13.15}, {'connected_gene': 'ENSG00000231563', 'score': 11.92}, {'connected_gene': 'OBSCN-AS1', 'score': 10.39}, {'connected_gene': 'WNT3A', 'score': 9.99}, {'connected_gene': 'GJC2', 'score': 4.48}, {'connected_gene': 'HIST3H2A', 'score': 2.15}, {'connected_gene': 'RPL23AP15', 'score': 0.77}, {'connected_gene': 'HIST3H3', 'score': 0.34}]
chr1	GH01I228081	228081203	228091907	2.51	[{'connected_gene': 'ARF1', 'score': 553.38}, {'connected_gene': 'CICP26', 'score': 64.2}, {'connected_gene': 'ENSG00000269890', 'score': 42.31}, {'connected_gene': 'ZNF678', 'score': 32.31}, {'connected_gene': 'C1orf35', 'score': 28.77}, {'connected_gene': 'OBSCN', 'score': 27.84}, {'connected_gene': 'CDC42BPA', 'score': 19.74}, {'connected_gene': 'WNT3A', 'score': 10.58}, {'connected_gene': 'ENSG00000269934', 'score': 8.99}, {'connected_gene': 'OBSCN-AS1', 'score': 7.29}, {'connected_gene': 'MIR3620', 'score': 0.39}]
chr1	GH01I228403	228403895	228408562	2.03	[{'connected_gene': 'ENSG00000231563', 'score': 550.77}, {'connected_gene': 'TRIM11', 'score': 550.77}, {'connected_gene': 'GC01M228396', 'score': 550.77}, {'connected_gene': 'CICP26', 'score': 18.08}, {'connected_gene': 'ZNF678', 'score': 12.48}, {'connected_gene': 'HIST3H3', 'score': 10.87}, {'connected_gene': 'C1orf35', 'score': 10.54}, {'connected_gene': 'MRPL55', 'score': 10.43}, {'connected_gene': 'ENSG00000269890', 'score': 10.42}, {'connected_gene': 'WNT3A', 'score': 4.47}, {'connected_gene': 'PIR32292', 'score': 0.77}, {'connected_gene': 'GC01M228403', 'score': 0.77}, {'connected_gene': 'TRIM17', 'score': 0.39}]