PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000262643	[[30302804, 30303059], [30303438, 30303485], [30303595, 30303683], [30303875, 30303944], [30308043, 30308189], [30308312, 30308448], [30311608, 30311755], [30312628, 30312724], [30312902, 30313037], [30313146, 30313258], [30313352, 30313510], [30314561, 30315215]]	[[30303462, 30303485], [30303595, 30303683], [30303875, 30303944], [30308043, 30308189], [30308312, 30308448], [30311608, 30311755], [30312628, 30312724], [30312902, 30313037], [30313146, 30313258], [30313352, 30313510], [30314561, 30314684]]
ENST00000575243	[[30302910, 30303059], [30303438, 30303485], [30303595, 30303683], [30303884, 30303944], [30308043, 30308189], [30308312, 30308448], [30311608, 30311755], [30312628, 30312675]]	[[30303462, 30303485], [30303595, 30303683], [30303884, 30303944], [30308043, 30308189], [30308312, 30308448], [30311608, 30311755], [30312628, 30312675]]
ENST00000357943	[[30302910, 30303059], [30303438, 30303485], [30303595, 30303683], [30303875, 30303944], [30308043, 30308189], [30308312, 30308466], [30312628, 30312724], [30312902, 30313037], [30313146, 30313258], [30313352, 30313510], [30314561, 30315214]]	[[30303462, 30303485], [30303595, 30303683], [30303875, 30303944], [30308043, 30308189], [30308312, 30308466], [30312628, 30312724], [30312902, 30313037], [30313146, 30313258], [30313352, 30313510], [30314561, 30314684]]
ENST00000444983	[[30303560, 30303683], [30303875, 30303944], [30308043, 30308189], [30308312, 30308448], [30311608, 30311755], [30312628, 30312724], [30312902, 30313037], [30313146, 30313258], [30313352, 30313510], [30314561, 30315119]]	[[30303617, 30303683], [30303875, 30303944], [30308043, 30308189], [30308312, 30308448], [30311608, 30311755], [30312628, 30312724], [30312902, 30313037], [30313146, 30313258], [30313352, 30313510], [30314561, 30314684]]
ENST00000586912	[[30303631, 30303683], [30303875, 30304238]]	None
ENST00000576532	[[30308109, 30308189], [30308312, 30308448], [30311608, 30311755], [30312628, 30312724], [30313146, 30313258], [30313352, 30313510], [30314561, 30314917]]	[[30308109, 30308189], [30308312, 30308448], [30311608, 30311755], [30312628, 30312724], [30313146, 30313258], [30313352, 30313510], [30314561, 30314684]]
ENST00000574121	[[30312638, 30313037], [30313146, 30313258], [30313352, 30313510], [30314561, 30315187]]	None
NM_001322262	[[30302900, 30303059], [30303595, 30303683], [30303875, 30303944], [30308043, 30308189], [30308312, 30308448], [30311608, 30311755], [30312628, 30312724], [30312902, 30313037], [30313146, 30313258], [30313352, 30313510], [30314561, 30315224]]	[[30303617, 30303683], [30303875, 30303944], [30308043, 30308189], [30308312, 30308448], [30311608, 30311755], [30312628, 30312724], [30312902, 30313037], [30313146, 30313258], [30313352, 30313510], [30314561, 30314684]]
NM_001322261	[[30302900, 30303059], [30303438, 30303485], [30303595, 30303683], [30303875, 30303944], [30308043, 30308189], [30308312, 30308448], [30312628, 30312724], [30312902, 30313037], [30313146, 30313258], [30313352, 30313510], [30314561, 30315224]]	[[30303462, 30303485], [30303595, 30303683], [30303875, 30303944], [30308043, 30308189], [30308312, 30308448], [30312628, 30312724], [30312902, 30313037], [30313146, 30313258], [30313352, 30313510], [30314561, 30314684]]
NM_001322259	[[30302900, 30303059], [30303438, 30303485], [30303595, 30303683], [30303875, 30303944], [30308043, 30308189], [30308312, 30308448], [30311608, 30311755], [30312628, 30312724], [30313146, 30313258], [30313352, 30313510], [30314561, 30315224]]	[[30303462, 30303485], [30303595, 30303683], [30303875, 30303944], [30308043, 30308189], [30308312, 30308448], [30311608, 30311755], [30312628, 30312724], [30313146, 30313258], [30313352, 30313510], [30314561, 30314684]]
NM_001238	[[30302900, 30303059], [30303438, 30303485], [30303595, 30303683], [30303875, 30303944], [30308043, 30308189], [30308312, 30308448], [30311608, 30311755], [30312628, 30312724], [30312902, 30313037], [30313146, 30313258], [30313352, 30313510], [30314561, 30315224]]	[[30303462, 30303485], [30303595, 30303683], [30303875, 30303944], [30308043, 30308189], [30308312, 30308448], [30311608, 30311755], [30312628, 30312724], [30312902, 30313037], [30313146, 30313258], [30313352, 30313510], [30314561, 30314684]]

Promoter

Chrom	Start	End	Description
chr19	30302859	30302916	CAGE_peak_1_at_CCNE1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I030592	30592762	30595211	0.31	[{'connected_gene': 'CCNE1', 'score': 5.22}, {'connected_gene': 'GC19P030577', 'score': 0.37}, {'connected_gene': 'GC19M030643', 'score': 0.23}, {'connected_gene': 'ZNF536', 'score': 0.05}, {'connected_gene': 'GC19P029609', 'score': 0.02}]
chr19	GH19I030587	30587060	30591739	0.52	[{'connected_gene': 'CCNE1', 'score': 4.88}, {'connected_gene': 'GC19P030577', 'score': 0.39}, {'connected_gene': 'GC19M030643', 'score': 0.23}, {'connected_gene': 'ZNF536', 'score': 0.05}, {'connected_gene': 'GC19P029609', 'score': 0.02}]
chr19	GH19I029830	29830754	29832163	0.93	[{'connected_gene': 'CCNE1', 'score': 14.9}, {'connected_gene': 'URI1', 'score': 2.16}, {'connected_gene': 'C19orf12', 'score': 1.95}, {'connected_gene': 'PLEKHF1', 'score': 1.68}, {'connected_gene': 'POP4', 'score': 1.44}, {'connected_gene': 'ENSG00000267433', 'score': 0.19}, {'connected_gene': 'GC19P029609', 'score': 0.07}]
chr19	GH19I029759	29759971	29760600	1.13	[{'connected_gene': 'CCNE1', 'score': 17.84}, {'connected_gene': 'URI1', 'score': 11.35}, {'connected_gene': 'C19orf12', 'score': 0.26}, {'connected_gene': 'GC19P029609', 'score': 0.1}]
chr19	GH19I029775	29774234	29774383	0.31	[{'connected_gene': 'CCNE1', 'score': 16.23}, {'connected_gene': 'C19orf12', 'score': 0.22}, {'connected_gene': 'GC19P029609', 'score': 0.1}]
chr19	GH19I029804	29804097	29807661	1.06	[{'connected_gene': 'CCNE1', 'score': 21.19}, {'connected_gene': 'ENSG00000266910', 'score': 12.49}, {'connected_gene': 'C19orf12', 'score': 0.16}, {'connected_gene': 'GC19P029609', 'score': 0.08}]
chr19	GH19I029771	29771794	29771963	0.65	[{'connected_gene': 'CCNE1', 'score': 9.21}, {'connected_gene': 'C19orf12', 'score': 0.22}, {'connected_gene': 'GC19P029609', 'score': 0.1}]
chr19	GH19I029774	29774713	29776318	0.57	[{'connected_gene': 'CCNE1', 'score': 16.22}, {'connected_gene': 'C19orf12', 'score': 0.22}, {'connected_gene': 'GC19P029609', 'score': 0.1}]
chr19	GH19I029798	29798022	29800112	0.57	[{'connected_gene': 'CCNE1', 'score': 20.55}, {'connected_gene': 'C19orf12', 'score': 0.18}, {'connected_gene': 'GC19P029609', 'score': 0.09}]
chr19	GH19I029780	29780938	29783068	0.43	[{'connected_gene': 'CCNE1', 'score': 15.69}, {'connected_gene': 'C19orf12', 'score': 0.2}, {'connected_gene': 'GC19P029609', 'score': 0.09}]
chr19	GH19I029810	29810266	29813001	2.05	[{'connected_gene': 'CCNE1', 'score': 565.33}, {'connected_gene': 'ENSG00000266910', 'score': 11.88}, {'connected_gene': 'RPL9P32', 'score': 10.71}, {'connected_gene': 'C19orf12', 'score': 0.15}, {'connected_gene': 'GC19P029609', 'score': 0.08}]
chr19	GH19I029879	29879094	29879243	0.75	[{'connected_gene': 'CCNE1', 'score': 11.35}, {'connected_gene': 'ENSG00000267433', 'score': 0.34}, {'connected_gene': 'GC19P029609', 'score': 0.06}]
chr19	GH19I029858	29858154	29858303	0.72	[{'connected_gene': 'CCNE1', 'score': 11.17}, {'connected_gene': 'ENSG00000267433', 'score': 0.26}, {'connected_gene': 'GC19P029609', 'score': 0.07}]
chr19	GH19I029849	29849134	29849283	0.2	[{'connected_gene': 'CCNE1', 'score': 0.28}, {'connected_gene': 'ENSG00000267433', 'score': 0.23}, {'connected_gene': 'GC19P029609', 'score': 0.07}]
chr19	GH19I029814	29814926	29815810	0.31	[{'connected_gene': 'CCNE1', 'score': 22.1}, {'connected_gene': 'ENSG00000267433', 'score': 0.17}, {'connected_gene': 'GC19P029609', 'score': 0.08}]
chr19	GH19I029836	29836583	29838158	0.76	[{'connected_gene': 'CCNE1', 'score': 30.13}, {'connected_gene': 'ENSG00000267433', 'score': 0.21}, {'connected_gene': 'GC19P029609', 'score': 0.07}]
chr19	GH19I029835	29835074	29835223	0.71	[{'connected_gene': 'CCNE1', 'score': 12.24}, {'connected_gene': 'ENSG00000267433', 'score': 0.2}, {'connected_gene': 'GC19P029609', 'score': 0.07}]
chr19	GH19I029848	29848934	29849063	0.2	[{'connected_gene': 'CCNE1', 'score': 0.28}, {'connected_gene': 'ENSG00000267433', 'score': 0.23}, {'connected_gene': 'GC19P029609', 'score': 0.07}]
chr19	GH19I029963	29963633	29966464	0.92	[{'connected_gene': 'URI1', 'score': 11.99}, {'connected_gene': 'CCNE1', 'score': 10.1}, {'connected_gene': 'RPL9P32', 'score': 0.44}, {'connected_gene': 'GC19P029979', 'score': 0.39}, {'connected_gene': 'GC19P029609', 'score': 0.05}]
chr19	GH19I029870	29870664	29875925	1.34	[{'connected_gene': 'URI1', 'score': 22.77}, {'connected_gene': 'CCNE1', 'score': 17.97}, {'connected_gene': 'ENSG00000267528', 'score': 5.13}, {'connected_gene': 'ENSG00000267433', 'score': 0.31}, {'connected_gene': 'GC19P029609', 'score': 0.07}]
chr19	GH19I029723	29723674	29724800	0.92	[{'connected_gene': 'C19orf12', 'score': 0.44}, {'connected_gene': 'CCNE1', 'score': 0.17}, {'connected_gene': 'GC19P029609', 'score': 0.14}]
chr19	GH19I029722	29722195	29722336	0.2	[{'connected_gene': 'C19orf12', 'score': 0.44}, {'connected_gene': 'CCNE1', 'score': 0.17}, {'connected_gene': 'GC19P029609', 'score': 0.14}]
chr19	GH19I029721	29721814	29721963	0.2	[{'connected_gene': 'C19orf12', 'score': 0.44}, {'connected_gene': 'CCNE1', 'score': 0.16}, {'connected_gene': 'GC19P029609', 'score': 0.14}]
chr19	GH19I029730	29730574	29730743	0.74	[{'connected_gene': 'C19orf12', 'score': 0.39}, {'connected_gene': 'CCNE1', 'score': 0.18}, {'connected_gene': 'GC19P029609', 'score': 0.13}]
chr19	GH19I029886	29886694	29886843	0.31	[{'connected_gene': 'ENSG00000267433', 'score': 0.37}, {'connected_gene': 'CCNE1', 'score': 0.19}, {'connected_gene': 'GC19P029609', 'score': 0.06}]
chr19	GH19I029882	29882114	29882381	0.2	[{'connected_gene': 'ENSG00000267528', 'score': 4.83}, {'connected_gene': 'ENSG00000267433', 'score': 0.37}, {'connected_gene': 'CCNE1', 'score': 0.19}, {'connected_gene': 'GC19P029609', 'score': 0.06}]
chr19	GH19I029881	29881129	29881403	0.46	[{'connected_gene': 'ENSG00000267433', 'score': 0.34}, {'connected_gene': 'CCNE1', 'score': 0.2}, {'connected_gene': 'GC19P029609', 'score': 0.06}]
chr19	GH19I029888	29888658	29889738	0.6	[{'connected_gene': 'ENSG00000267433', 'score': 0.39}, {'connected_gene': 'CCNE1', 'score': 0.18}, {'connected_gene': 'GC19P029609', 'score': 0.06}]
chr19	GH19I029893	29893632	29894247	0.95	[{'connected_gene': 'ENSG00000267433', 'score': 0.44}, {'connected_gene': 'CCNE1', 'score': 0.18}, {'connected_gene': 'GC19P029609', 'score': 0.06}]
chr19	GH19I029887	29887634	29887783	0.69	[{'connected_gene': 'ENSG00000267433', 'score': 0.39}, {'connected_gene': 'CCNE1', 'score': 0.18}, {'connected_gene': 'GC19P029609', 'score': 0.06}]
chr19	GH19I029840	29840624	29846400	1.7	[{'connected_gene': 'ENSG00000266910', 'score': 22.43}, {'connected_gene': 'RPL9P32', 'score': 20.79}, {'connected_gene': 'URI1', 'score': 10.58}, {'connected_gene': 'CCNE1', 'score': 8.7}, {'connected_gene': 'ENSG00000267433', 'score': 0.22}, {'connected_gene': 'GC19P029609', 'score': 0.07}]