PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr16	67204418	67204453	CAGE_peak_1_at_NOL3_5end
chr16	67207821	67207836	CAGE_peak_5_at_NOL3_5end
chr16	67207838	67207870	CAGE_peak_2_at_NOL3_5end
chr16	67207872	67207900	CAGE_peak_4_at_NOL3_5end
chr16	67208248	67208308	CAGE_peak_3_at_NOL3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I067180	67180998	67182405	0.99	[{'connected_gene': 'ATP6V0D1', 'score': 6.38}, {'connected_gene': 'DPEP2', 'score': 5.53}, {'connected_gene': 'ENKD1', 'score': 4.68}, {'connected_gene': 'KIAA0895L', 'score': 0.77}, {'connected_gene': 'NOL3', 'score': 0.39}]
chr16	GH16I067168	67168861	67172254	2.17	[{'connected_gene': 'NOL3', 'score': 550.77}, {'connected_gene': 'ATP6V0D1', 'score': 10.12}, {'connected_gene': 'HSF4', 'score': 0.44}, {'connected_gene': 'KIAA0895L', 'score': 0.39}]
chr16	GH16I067173	67173143	67175384	2.21	[{'connected_gene': 'NOL3', 'score': 550.77}, {'connected_gene': 'ELMO3', 'score': 12.91}, {'connected_gene': 'ENSG00000260465', 'score': 5.67}, {'connected_gene': 'KIAA0895L', 'score': 0.44}]
chr16	GH16I067175	67175750	67176301	0.38	[{'connected_gene': 'NOL3', 'score': 0.44}, {'connected_gene': 'KIAA0895L', 'score': 0.44}]
chr16	GH16I066902	66902498	66906583	1.98	[{'connected_gene': 'CES2', 'score': 24.81}, {'connected_gene': 'KIAA0895L', 'score': 21.58}, {'connected_gene': 'E2F4', 'score': 20.35}, {'connected_gene': 'NAE1', 'score': 18.67}, {'connected_gene': 'RRAD', 'score': 15.37}, {'connected_gene': 'FAM96B', 'score': 12.11}, {'connected_gene': 'EDC4', 'score': 12.01}, {'connected_gene': 'CENPT', 'score': 11.33}, {'connected_gene': 'CTCF', 'score': 11.02}, {'connected_gene': 'EXOC3L1', 'score': 9.96}, {'connected_gene': 'C16orf70', 'score': 9.85}, {'connected_gene': 'CES3', 'score': 9.5}, {'connected_gene': 'LINC00920', 'score': 6.03}, {'connected_gene': 'ELMO3', 'score': 5.94}, {'connected_gene': 'BEAN1', 'score': 4.82}, {'connected_gene': 'NOL3', 'score': 1.61}, {'connected_gene': 'GC16P066910', 'score': 0.44}, {'connected_gene': 'GC16P066912', 'score': 0.44}, {'connected_gene': 'PIR47501', 'score': 0.44}, {'connected_gene': 'GC16P066911', 'score': 0.44}, {'connected_gene': 'GC16P066890', 'score': 0.37}]
chr16	GH16I067137	67137718	67137867	0.46	[{'connected_gene': 'TRADD', 'score': 11.96}, {'connected_gene': 'FBXL8', 'score': 11.96}, {'connected_gene': 'HSF4', 'score': 11.93}, {'connected_gene': 'NOL3', 'score': 11.47}, {'connected_gene': 'CBFB', 'score': 10.66}, {'connected_gene': 'KIAA0895L', 'score': 10.47}, {'connected_gene': 'EXOC3L1', 'score': 10.46}, {'connected_gene': 'E2F4', 'score': 10.46}, {'connected_gene': 'CES2', 'score': 10.37}, {'connected_gene': 'CDH16', 'score': 10.02}, {'connected_gene': 'RRAD', 'score': 10.02}, {'connected_gene': 'PIR51258', 'score': 0.39}, {'connected_gene': 'C16orf70', 'score': 0.31}]
chr16	GH16I067177	67177543	67179269	1.3	[{'connected_gene': 'ELMO3', 'score': 11.97}, {'connected_gene': 'NOL3', 'score': 0.44}, {'connected_gene': 'KIAA0895L', 'score': 0.44}]
chr16	GH16I067162	67162521	67166622	1.87	[{'connected_gene': 'HSF4', 'score': 550.77}, {'connected_gene': 'ENSG00000265690', 'score': 550.77}, {'connected_gene': 'ATP6V0D1', 'score': 10.69}, {'connected_gene': 'B3GNT9', 'score': 5.57}, {'connected_gene': 'LRRC36', 'score': 3.99}, {'connected_gene': 'FBXL8', 'score': 0.77}, {'connected_gene': 'NOL3', 'score': 0.44}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000565560	[[67204056, 67204104], [67208064, 67208367], [67208523, 67208751]]	[[67208072, 67208367], [67208523, 67208751]]
ENST00000563439	[[67204399, 67204477], [67205054, 67205155], [67207910, 67207949], [67208064, 67208367], [67208523, 67208644]]	[[67208072, 67208367], [67208523, 67208644]]
ENST00000568086	[[67204404, 67204477], [67205054, 67205559]]	None
ENST00000432069	[[67204404, 67204477], [67205054, 67205360], [67207764, 67207949], [67208064, 67208367], [67208523, 67208847], [67208949, 67209643]]	[[67208072, 67208367], [67208523, 67208847], [67208949, 67208957]]
ENST00000564992	[[67204427, 67204477], [67208064, 67208367], [67208523, 67208847]]	[[67208072, 67208367], [67208523, 67208847]]
ENST00000564053	[[67204442, 67204477], [67205054, 67205360], [67207764, 67207949], [67208064, 67208367], [67208523, 67208847], [67208949, 67209388]]	[[67207771, 67207949], [67208064, 67208367], [67208523, 67208847], [67208949, 67208957]]
ENST00000565645	[[67204444, 67204477], [67205054, 67205360], [67207652, 67207832]]	None
ENST00000568199	[[67205536, 67205905], [67206662, 67206906]]	None
ENST00000566871	[[67207853, 67207949], [67208064, 67208243], [67208523, 67208847], [67208949, 67209102]]	[[67207853, 67207949], [67208064, 67208243], [67208523, 67208847], [67208949, 67209000]]
ENST00000568503	[[67207856, 67207949], [67208064, 67208847], [67208949, 67209584]]	None
ENST00000268605	[[67207869, 67207949], [67208064, 67208367], [67208523, 67208847], [67208949, 67209624]]	[[67208072, 67208367], [67208523, 67208847], [67208949, 67208957]]
ENST00000563258	[[67207886, 67207949], [67208523, 67208847], [67208949, 67209356]]	[[67207886, 67207949], [67208523, 67208847], [67208949, 67208957]]
ENST00000568146	[[67207904, 67207949], [67208064, 67208357], [67208523, 67208847], [67208949, 67209638]]	[[67208072, 67208357], [67208523, 67208847], [67208949, 67209000]]
ENST00000564860	[[67208746, 67208849], [67208949, 67209163]]	[[67208746, 67208849], [67208949, 67209163]]
NM_001276309	[[67204399, 67204477], [67208064, 67208367], [67208523, 67208847], [67208949, 67209640]]	[[67208072, 67208367], [67208523, 67208847], [67208949, 67208957]]
NM_001276307	[[67204399, 67204477], [67205054, 67205155], [67207910, 67207949], [67208064, 67208367], [67208523, 67208847], [67208949, 67209640]]	[[67208072, 67208367], [67208523, 67208847], [67208949, 67208957]]
NM_001276319	[[67204399, 67204477], [67205054, 67205360], [67207764, 67207949], [67208064, 67208367], [67208523, 67208847], [67208949, 67209640]]	[[67207771, 67207949], [67208064, 67208367], [67208523, 67208847], [67208949, 67208957]]
NM_001276312	[[67204399, 67204477], [67205054, 67205360], [67207764, 67207949], [67208064, 67208367], [67208523, 67208847], [67208949, 67209640]]	[[67208072, 67208367], [67208523, 67208847], [67208949, 67208957]]
NM_001276311	[[67207755, 67207949], [67208064, 67208243], [67208523, 67208847], [67208949, 67209640]]	[[67208072, 67208243], [67208523, 67208847], [67208949, 67209000]]
NM_001185057	[[67207755, 67207949], [67208064, 67208357], [67208523, 67208847], [67208949, 67209640]]	[[67208072, 67208357], [67208523, 67208847], [67208949, 67209000]]
NM_003946	[[67207755, 67207949], [67208064, 67208367], [67208523, 67208847], [67208949, 67209640]]	[[67208072, 67208367], [67208523, 67208847], [67208949, 67208957]]