PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000263663	[[9983482, 9983688], [9985348, 9985447], [9989501, 9989589], [9991669, 9991767], [9994454, 9994550], [10008404, 10008558], [10015993, 10016147], [10022834, 10022934], [10044987, 10045135], [10050864, 10051042], [10051639, 10051686], [10053287, 10053378], [10059169, 10059240], [10059726, 10059949], [10073911, 10074545]]	[[9983670, 9983688], [9985348, 9985447], [9989501, 9989589], [9991669, 9991767], [9994454, 9994550], [10008404, 10008558], [10015993, 10016147], [10022834, 10022934], [10044987, 10045135], [10050864, 10051042], [10051639, 10051686], [10053287, 10053378], [10059169, 10059240], [10059726, 10059949], [10073911, 10074113]]
ENST00000402170	[[9983610, 9983688], [9985348, 9985447], [9989501, 9989589], [9991669, 9991767], [9994454, 9994550], [10008404, 10008558], [10008791, 10008893]]	None
ENST00000404869	[[9983625, 9983688], [9985348, 9985447], [9989501, 9989589], [9991669, 9991767], [9992096, 9992253]]	None
ENST00000497182	[[9983647, 9983688], [9985348, 9985949]]	None
ENST00000396242	[[9983651, 9983688], [9985348, 9985447], [9986185, 9986315], [9989501, 9989589], [9991669, 9991767], [9994454, 9994550], [10008404, 10008558], [10022834, 10022934], [10044987, 10045135], [10050864, 10051042], [10051639, 10051686], [10053287, 10053378], [10059169, 10059240], [10059726, 10059949], [10073911, 10074282]]	[[10022892, 10022934], [10044987, 10045135], [10050864, 10051042], [10051639, 10051686], [10053287, 10053378], [10059169, 10059240], [10059726, 10059949], [10073911, 10074113]]
ENST00000434858	[[9983653, 9983688], [9985348, 9985447], [9989501, 9989589], [9991669, 9991767], [9994454, 9994550], [10008404, 10008558], [10022834, 10022934], [10044987, 10045135], [10050864, 10051042], [10051639, 10051686], [10053287, 10053378], [10059169, 10059240], [10059726, 10059949], [10073911, 10074075]]	[[9983670, 9983688], [9985348, 9985447], [9989501, 9989589], [9991669, 9991767], [9994454, 9994550], [10008404, 10008558], [10022834, 10022866]]
ENST00000416181	[[9983655, 9983688], [9985348, 9985447], [9986185, 9986315], [9989501, 9989536]]	[[9983670, 9983688], [9985348, 9985447], [9986185, 9986242]]
ENST00000469895	[[9983713, 9983872], [9985348, 9985447], [9989501, 9989589], [9991669, 9991767], [9994454, 9994550], [10008404, 10008545]]	None
ENST00000480197	[[9983831, 9983903], [9985348, 9985447], [9989501, 9989589], [9991669, 9991767], [9994454, 9994550], [10008404, 10008505]]	None
ENST00000490432	[[9983851, 9983903], [9984470, 9984606], [9985348, 9985447], [9989501, 9989589], [9991669, 9991767], [9992096, 9992243]]	None
ENST00000492648	[[10016126, 10016147], [10022834, 10022934], [10044987, 10045135], [10050864, 10051042], [10051639, 10051686], [10053287, 10053838]]	[[10016126, 10016147], [10022834, 10022934], [10044987, 10045135], [10050864, 10051042], [10051639, 10051686], [10053287, 10053442]]
NM_001318977	[[9983570, 9983688], [9985348, 9985447], [9989501, 9989589], [9991669, 9991767], [9994454, 9994550], [10008404, 10008558], [10022834, 10022934], [10044987, 10045135], [10050864, 10051042], [10051639, 10051686], [10053287, 10053378], [10059169, 10059240], [10059726, 10059949], [10073911, 10074545]]	[[10022892, 10022934], [10044987, 10045135], [10050864, 10051042], [10051639, 10051686], [10053287, 10053378], [10059169, 10059240], [10059726, 10059949], [10073911, 10074113]]
NM_005680	[[9983570, 9983688], [9985348, 9985447], [9989501, 9989589], [9991669, 9991767], [9994454, 9994550], [10008404, 10008558], [10015993, 10016147], [10022834, 10022934], [10044987, 10045135], [10050864, 10051042], [10051639, 10051686], [10053287, 10053378], [10059169, 10059240], [10059726, 10059949], [10073911, 10074545]]	[[9983670, 9983688], [9985348, 9985447], [9989501, 9989589], [9991669, 9991767], [9994454, 9994550], [10008404, 10008558], [10015993, 10016147], [10022834, 10022934], [10044987, 10045135], [10050864, 10051042], [10051639, 10051686], [10053287, 10053378], [10059169, 10059240], [10059726, 10059949], [10073911, 10074113]]
NM_001318976	[[9983570, 9983688], [9985348, 9985447], [9986185, 9986315], [9989501, 9989589], [9991669, 9991767], [9994454, 9994550], [10008404, 10008558], [10022834, 10022934], [10044987, 10045135], [10050864, 10051042], [10051639, 10051686], [10053287, 10053378], [10059169, 10059240], [10059726, 10059949], [10073911, 10074545]]	[[10022892, 10022934], [10044987, 10045135], [10050864, 10051042], [10051639, 10051686], [10053287, 10053378], [10059169, 10059240], [10059726, 10059949], [10073911, 10074113]]

Promoter

Chrom	Start	End	Description
chr2	9983555	9983641	CAGE_peak_1_at_TAF1B_5end
chr2	9983642	9983657	CAGE_peak_2_at_TAF1B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr2	GH02I009914	9914126	9915401	0.91	[{'connected_gene': 'TAF1B', 'score': 16.18}, {'connected_gene': 'GRHL1', 'score': 11.65}, {'connected_gene': 'ENSG00000269973', 'score': 9.82}]
chr2	GH02I010220	10220455	10221702	0.49	[{'connected_gene': 'TAF1B', 'score': 4.37}, {'connected_gene': 'LOC105373424', 'score': 0.37}, {'connected_gene': 'RN7SL66P', 'score': 0.22}]
chr2	GH02I009939	9939367	9940305	0.49	[{'connected_gene': 'TAF1B', 'score': 13.93}, {'connected_gene': 'ENSG00000269973', 'score': 7.55}, {'connected_gene': 'LOC105373422', 'score': 0.39}]
chr2	GH02I009942	9942674	9943409	0.2	[{'connected_gene': 'TAF1B', 'score': 12.49}, {'connected_gene': 'LOC105373422', 'score': 0.44}, {'connected_gene': 'ENSG00000269973', 'score': 0.44}]
chr2	GH02I009944	9944358	9944988	0.87	[{'connected_gene': 'TAF1B', 'score': 12.75}, {'connected_gene': 'ENSG00000269973', 'score': 8.04}, {'connected_gene': 'LOC105373422', 'score': 0.44}]
chr2	GH02I009940	9940707	9942034	1.16	[{'connected_gene': 'TAF1B', 'score': 13.4}, {'connected_gene': 'ENSG00000269973', 'score': 7.16}, {'connected_gene': 'LOC105373422', 'score': 0.44}]
chr2	GH02I009813	9813430	9814305	1.23	[{'connected_gene': 'TAF1B', 'score': 7.23}, {'connected_gene': 'LOC105373421', 'score': 0.44}]
chr2	GH02I009819	9819519	9820855	0.83	[{'connected_gene': 'TAF1B', 'score': 38.38}, {'connected_gene': 'ENSG00000269973', 'score': 20.78}, {'connected_gene': 'LOC105373421', 'score': 0.39}]
chr2	GH02I010429	10429965	10435755	1.67	[{'connected_gene': 'TAF1B', 'score': 31.73}, {'connected_gene': 'LOC101929882', 'score': 28.23}, {'connected_gene': 'KLF11', 'score': 19.21}, {'connected_gene': 'NOL10', 'score': 18.64}, {'connected_gene': 'C2orf48', 'score': 11.35}, {'connected_gene': 'ENSG00000217258', 'score': 11.32}, {'connected_gene': 'YWHAQ', 'score': 11.31}, {'connected_gene': 'ENSG00000239300', 'score': 10.71}, {'connected_gene': 'CYS1', 'score': 10.4}, {'connected_gene': 'ENSG00000233502', 'score': 10.4}, {'connected_gene': 'ENSG00000257135', 'score': 10.39}, {'connected_gene': 'IAH1', 'score': 6.04}, {'connected_gene': 'GC02M010446', 'score': 0.39}, {'connected_gene': 'SNORA80B', 'score': 0.39}, {'connected_gene': 'PIR41580', 'score': 0.34}]
chr2	GH02I009216	9216600	9220289	0.62	[{'connected_gene': 'TAF1B', 'score': 13.32}, {'connected_gene': 'LOC101929882', 'score': 9.78}, {'connected_gene': 'ADAM17', 'score': 4.9}, {'connected_gene': 'ITGB1BP1', 'score': 4.32}, {'connected_gene': 'ASAP2', 'score': 0.39}, {'connected_gene': 'GC02M009211', 'score': 0.34}]
chr2	GH02I009842	9842538	9845442	2.27	[{'connected_gene': 'TAF1B', 'score': 613.93}, {'connected_gene': 'LOC101929882', 'score': 32.35}, {'connected_gene': 'CPSF3', 'score': 14.76}, {'connected_gene': 'ENSG00000269973', 'score': 11.71}, {'connected_gene': 'NOL10', 'score': 11.48}, {'connected_gene': 'ENSG00000239300', 'score': 10.01}]
chr2	GH02I010016	10016235	10020664	0.87	[{'connected_gene': 'TAF1B', 'score': 12.86}, {'connected_gene': 'LOC101929882', 'score': 5.33}, {'connected_gene': 'GRHL1', 'score': 5.06}, {'connected_gene': 'ENSG00000260476', 'score': 0.77}, {'connected_gene': 'PIR44200', 'score': 0.39}]
chr2	GH02I010011	10011435	10011808	0.58	[{'connected_gene': 'TAF1B', 'score': 10.09}, {'connected_gene': 'PIR44200', 'score': 0.77}, {'connected_gene': 'ENSG00000260476', 'score': 0.44}]
chr2	GH02I009877	9877184	9878423	0.2	[{'connected_gene': 'TAF1B', 'score': 14.96}, {'connected_gene': 'ENSG00000269973', 'score': 11.48}]
chr2	GH02I009894	9894868	9898699	1.2	[{'connected_gene': 'TAF1B', 'score': 24.35}, {'connected_gene': 'ENSG00000269973', 'score': 10.94}]
chr2	GH02I009918	9918458	9918975	0.2	[{'connected_gene': 'TAF1B', 'score': 14.4}, {'connected_gene': 'ENSG00000269973', 'score': 9.85}]
chr2	GH02I009169	9169694	9171446	1.1	[{'connected_gene': 'ASAP2', 'score': 18.21}, {'connected_gene': 'LOC101929882', 'score': 13.42}, {'connected_gene': 'TAF1B', 'score': 12.08}, {'connected_gene': 'ITGB1BP1', 'score': 10.38}, {'connected_gene': 'CPSF3', 'score': 10.38}, {'connected_gene': 'ADAM17', 'score': 5.72}, {'connected_gene': 'LOC105373417', 'score': 0.34}, {'connected_gene': 'LOC100506317', 'score': 0.28}]
chr2	GH02I010574	10574725	10577575	0.83	[{'connected_gene': 'NOL10', 'score': 51.62}, {'connected_gene': 'RN7SL832P', 'score': 21.24}, {'connected_gene': 'TAF1B', 'score': 13.32}, {'connected_gene': 'LOC101929882', 'score': 9.78}, {'connected_gene': 'ENSG00000234818', 'score': 0.39}, {'connected_gene': 'LOC105373426', 'score': 0.31}]
chr2	GH02I010513	10513945	10516004	0.8	[{'connected_gene': 'NOL10', 'score': 11.34}, {'connected_gene': 'LOC101929882', 'score': 11.15}, {'connected_gene': 'TAF1B', 'score': 9.88}, {'connected_gene': 'ODC1', 'score': 5.51}, {'connected_gene': 'LOC105373426', 'score': 0.29}, {'connected_gene': 'PIR33833', 'score': 0.22}]
chr2	GH02I009546	9546928	9557411	2.64	[{'connected_gene': 'ADAM17', 'score': 579.56}, {'connected_gene': 'CPSF3', 'score': 23.02}, {'connected_gene': 'LOC101929882', 'score': 12.49}, {'connected_gene': 'TAF1B', 'score': 10.6}, {'connected_gene': 'ENSG00000239300', 'score': 10.2}, {'connected_gene': 'IAH1', 'score': 10.14}, {'connected_gene': 'ENSG00000271855', 'score': 9.91}]
chr2	GH02I010119	10119383	10125485	2.63	[{'connected_gene': 'RRM2', 'score': 563.82}, {'connected_gene': 'ENSG00000284681', 'score': 550.77}, {'connected_gene': 'LOC101929882', 'score': 21.81}, {'connected_gene': 'ENSG00000233502', 'score': 11.78}, {'connected_gene': 'CYS1', 'score': 11.76}, {'connected_gene': 'TAF1B', 'score': 11.1}, {'connected_gene': 'SNORA80B', 'score': 10.78}, {'connected_gene': 'HPCAL1', 'score': 10.68}, {'connected_gene': 'LOC101929691', 'score': 10.09}, {'connected_gene': 'ODC1', 'score': 2.58}]
chr2	GH02I009421	9421806	9425235	2.28	[{'connected_gene': 'CPSF3', 'score': 562.2}, {'connected_gene': 'ITGB1BP1', 'score': 550.77}, {'connected_gene': 'TAF1B', 'score': 13.19}, {'connected_gene': 'ENSG00000239300', 'score': 10.86}, {'connected_gene': 'IAH1', 'score': 10.78}, {'connected_gene': 'ASAP2', 'score': 10.39}, {'connected_gene': 'ADAM17', 'score': 9.57}, {'connected_gene': 'GC02M009313', 'score': 0.14}]
chr2	GH02I010392	10392597	10394344	1.33	[{'connected_gene': 'HPCAL1', 'score': 17.06}, {'connected_gene': 'TAF1B', 'score': 10.02}, {'connected_gene': 'PIR41580', 'score': 0.37}]
chr2	GH02I010379	10379802	10391280	1.46	[{'connected_gene': 'HPCAL1', 'score': 21.57}, {'connected_gene': 'NOL10', 'score': 15.36}, {'connected_gene': 'LOC101929691', 'score': 12.03}, {'connected_gene': 'LOC101929882', 'score': 11.27}, {'connected_gene': 'TAF1B', 'score': 10.52}, {'connected_gene': 'ENSG00000269973', 'score': 5.15}, {'connected_gene': 'PIR41580', 'score': 0.34}]
chr2	GH02I010327	10327657	10333761	2.14	[{'connected_gene': 'HPCAL1', 'score': 596.14}, {'connected_gene': 'LOC101929691', 'score': 11.69}, {'connected_gene': 'SNORA80B', 'score': 10.35}, {'connected_gene': 'TAF1B', 'score': 4.51}, {'connected_gene': 'PIR41580', 'score': 0.18}]
chr2	GH02I009815	9815821	9816280	0.38	[{'connected_gene': 'GRHL1', 'score': 11.89}, {'connected_gene': 'TAF1B', 'score': 2.91}, {'connected_gene': 'LOC105373421', 'score': 0.44}]
chr2	GH02I009810	9810987	9812824	0.66	[{'connected_gene': 'CYS1', 'score': 11.16}, {'connected_gene': 'ENSG00000233502', 'score': 11.16}, {'connected_gene': 'TAF1B', 'score': 7.24}, {'connected_gene': 'ENSG00000269973', 'score': 6.93}, {'connected_gene': 'LOC105373421', 'score': 0.77}]
chr2	GH02I009002	9002504	9005359	1.99	[{'connected_gene': 'MBOAT2', 'score': 550.77}, {'connected_gene': 'ENSG00000239300', 'score': 16.5}, {'connected_gene': 'CPSF3', 'score': 16.13}, {'connected_gene': 'TAF1B', 'score': 12.79}, {'connected_gene': 'HMGB1P25', 'score': 0.39}]
chr2	GH02I009627	9627686	9633322	2.28	[{'connected_gene': 'YWHAQ', 'score': 555.98}, {'connected_gene': 'LOC101929882', 'score': 30.39}, {'connected_gene': 'ENSG00000239300', 'score': 16.6}, {'connected_gene': 'CPSF3', 'score': 16.17}, {'connected_gene': 'RNU4-73P', 'score': 11.22}, {'connected_gene': 'ENSG00000240960', 'score': 11.21}, {'connected_gene': 'KLF11', 'score': 10.74}, {'connected_gene': 'TAF1B', 'score': 9.98}, {'connected_gene': 'IAH1', 'score': 5.24}, {'connected_gene': 'ENSG00000207086', 'score': 0.37}]
chr2	GH02I010688	10688833	10691000	2.05	[{'connected_gene': 'RN7SL832P', 'score': 556.61}, {'connected_gene': 'NOL10', 'score': 550.77}, {'connected_gene': 'ENSG00000277446', 'score': 550.77}, {'connected_gene': 'TAF1B', 'score': 9.93}, {'connected_gene': 'GC02P010687', 'score': 0.77}]
chr2	GH02I009807	9807854	9810198	0.89	[{'connected_gene': 'LOC105373421', 'score': 550.77}, {'connected_gene': 'CYS1', 'score': 11.16}, {'connected_gene': 'ENSG00000233502', 'score': 11.16}, {'connected_gene': 'TAF1B', 'score': 5.52}, {'connected_gene': 'ENSG00000269973', 'score': 4.47}]
chr2	GH02I009221	9221916	9223241	0.38	[{'connected_gene': 'LOC101929882', 'score': 13.42}, {'connected_gene': 'TAF1B', 'score': 11.97}, {'connected_gene': 'ITGB1BP1', 'score': 10.29}, {'connected_gene': 'CPSF3', 'score': 10.29}, {'connected_gene': 'ENSG00000239300', 'score': 10.01}, {'connected_gene': 'ADAM17', 'score': 5.08}, {'connected_gene': 'GC02M009211', 'score': 0.37}, {'connected_gene': 'ASAP2', 'score': 0.37}]
chr2	GH02I010041	10041592	10045951	2.23	[{'connected_gene': 'LOC101929882', 'score': 586.28}, {'connected_gene': 'KLF11', 'score': 555.72}, {'connected_gene': 'ENSG00000233502', 'score': 12.7}, {'connected_gene': 'NOL10', 'score': 12.42}, {'connected_gene': 'TAF1B', 'score': 12.03}, {'connected_gene': 'ENSG00000239300', 'score': 9.98}, {'connected_gene': 'GRHL1', 'score': 4.94}, {'connected_gene': 'ENSG00000271787', 'score': 0.39}]
chr2	GH02I010007	10007000	10007201	0.69	[{'connected_gene': 'PIR60135', 'score': 550.77}, {'connected_gene': 'PIR44200', 'score': 550.77}, {'connected_gene': 'ENSG00000188525', 'score': 550.77}, {'connected_gene': 'TAF1B', 'score': 10.09}, {'connected_gene': 'GRHL1', 'score': 5.27}, {'connected_gene': 'LOC101929882', 'score': 5.16}]
chr2	GH02I010006	10006733	10006882	0.69	[{'connected_gene': 'PIR60135', 'score': 550.77}, {'connected_gene': 'PIR44200', 'score': 550.77}, {'connected_gene': 'ENSG00000188525', 'score': 550.77}, {'connected_gene': 'TAF1B', 'score': 10.09}, {'connected_gene': 'GRHL1', 'score': 7.48}]
chr2	GH02I009837	9837092	9837381	0.46	[{'connected_gene': 'ENSG00000269973', 'score': 11.42}, {'connected_gene': 'TAF1B', 'score': 0.44}, {'connected_gene': 'LOC105373421', 'score': 0.31}]
chr2	GH02I009836	9836192	9836979	0.57	[{'connected_gene': 'ENSG00000269973', 'score': 11.42}, {'connected_gene': 'TAF1B', 'score': 0.44}, {'connected_gene': 'LOC105373421', 'score': 0.31}]
chr2	GH02I009934	9934971	9935281	0.27	[{'connected_gene': 'ENSG00000269973', 'score': 556.07}, {'connected_gene': 'TAF1B', 'score': 15.68}]
chr2	GH02I009846	9846062	9847281	0.8	[{'connected_gene': 'ENSG00000269973', 'score': 12.03}, {'connected_gene': 'TAF1B', 'score': 0.77}]
chr2	GH02I010134	10134284	10134595	0.34	[{'connected_gene': 'ENSG00000206647', 'score': 12.08}, {'connected_gene': 'RRM2', 'score': 3.67}, {'connected_gene': 'C2orf48', 'score': 3.5}, {'connected_gene': 'TAF1B', 'score': 1.78}, {'connected_gene': 'ENSG00000284681', 'score': 0.39}]
chr2	GH02I009829	9829912	9832841	1.26	[{'connected_gene': 'ENSG00000269973', 'score': 20.71}, {'connected_gene': 'ENSG00000239300', 'score': 16.52}, {'connected_gene': 'CPSF3', 'score': 16.14}, {'connected_gene': 'NOL10', 'score': 11.36}, {'connected_gene': 'LOC101929882', 'score': 10.66}, {'connected_gene': 'TAF1B', 'score': 0.39}, {'connected_gene': 'LOC105373421', 'score': 0.34}]
chr2	GH02I009821	9821082	9822981	0.43	[{'connected_gene': 'ENSG00000269973', 'score': 19.86}, {'connected_gene': 'LOC105373421', 'score': 0.39}, {'connected_gene': 'TAF1B', 'score': 0.34}]
chr2	GH02I010296	10296477	10298824	1.3	[{'connected_gene': 'GC02M010296', 'score': 550.77}, {'connected_gene': 'LOC101929882', 'score': 13.46}, {'connected_gene': 'TAF1B', 'score': 12.1}, {'connected_gene': 'NOL10', 'score': 11.64}, {'connected_gene': 'LOC101929691', 'score': 0.77}]
chr2	GH02I010446	10446270	10451239	2.3	[{'connected_gene': 'ENSG00000257135', 'score': 561.63}, {'connected_gene': 'SNORA80B', 'score': 550.77}, {'connected_gene': 'ODC1', 'score': 550.77}, {'connected_gene': 'GC02M010446', 'score': 550.77}, {'connected_gene': 'LOC101929715', 'score': 550.77}, {'connected_gene': 'TAF1B', 'score': 10.02}]