PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000514815	[[108511432, 108511554], [108552786, 108552960]]	None
ENST00000265174	[[108534821, 108535543], [108552786, 108553016], [108565957, 108566226], [108574646, 108574782], [108575850, 108576056], [108578051, 108578163], [108581114, 108581228], [108603170, 108603289], [108608194, 108608333], [108614926, 108615162], [108622326, 108622441], [108641275, 108641608]]	[[108535404, 108535543], [108552786, 108553016], [108565957, 108566226], [108574646, 108574782], [108575850, 108576056], [108578051, 108578163], [108581114, 108581228], [108603170, 108603289], [108608194, 108608333], [108614926, 108615162], [108622326, 108622441], [108641275, 108641335]]
ENST00000511304	[[108574648, 108574782], [108575850, 108576056], [108578051, 108578163], [108581114, 108581228], [108603170, 108603289], [108608194, 108608333], [108641275, 108641378]]	None
ENST00000502431	[[108581115, 108581228], [108603170, 108603289], [108608194, 108608333], [108614926, 108615162], [108622326, 108622441], [108640998, 108641179]]	None
ENST00000514489	[[108608267, 108608333], [108614926, 108615162], [108622326, 108622441], [108639497, 108639552], [108641275, 108641382]]	None
ENST00000506544	[[108608284, 108608333], [108614926, 108615454]]	None
ENST00000512641	[[108614925, 108615162], [108622326, 108622441], [108641159, 108641273]]	None
ENST00000504987	[[108614995, 108615162], [108622326, 108622441], [108641159, 108641369]]	None
NM_005443	[[108534821, 108535543], [108552786, 108553016], [108565957, 108566226], [108574646, 108574782], [108575850, 108576056], [108578051, 108578163], [108581114, 108581228], [108603170, 108603289], [108608194, 108608333], [108614926, 108615162], [108622326, 108622441], [108641275, 108641419]]	[[108535404, 108535543], [108552786, 108553016], [108565957, 108566226], [108574646, 108574782], [108575850, 108576056], [108578051, 108578163], [108581114, 108581228], [108603170, 108603289], [108608194, 108608333], [108614926, 108615162], [108622326, 108622441], [108641275, 108641335]]

Promoter

Chrom	Start	End	Description
chr4	108641066	108641110	CAGE_peak_2_at_PAPSS1_5end
chr4	108641345	108641431	CAGE_peak_1_at_PAPSS1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I107808	107808368	107809938	0.2	[{'connected_gene': 'PAPSS1', 'score': 16.37}, {'connected_gene': 'RPL34', 'score': 4.86}, {'connected_gene': 'SGMS2', 'score': 4.86}, {'connected_gene': 'GC04P107803', 'score': 0.44}]
chr4	GH04I107913	107913201	107913401	0.69	[{'connected_gene': 'PAPSS1', 'score': 10.54}, {'connected_gene': 'RPL34-AS1', 'score': 4.96}, {'connected_gene': 'CYP2U1', 'score': 0.37}, {'connected_gene': 'RNU6-733P', 'score': 0.25}, {'connected_gene': 'LOC101929595', 'score': 0.2}, {'connected_gene': 'SGMS2', 'score': 0.17}]
chr4	GH04I107830	107830323	107831599	0.38	[{'connected_gene': 'PAPSS1', 'score': 9.83}, {'connected_gene': 'SGMS2', 'score': 0.44}, {'connected_gene': 'GC04P107803', 'score': 0.31}, {'connected_gene': 'RNU6-733P', 'score': 0.28}]
chr4	GH04I107623	107623584	107623958	0.22	[{'connected_gene': 'PAPSS1', 'score': 4.46}, {'connected_gene': 'SGMS2', 'score': 3.14}, {'connected_gene': 'LOC105377358', 'score': 0.29}, {'connected_gene': 'GC04P107697', 'score': 0.19}]
chr4	GH04I107792	107792992	107794774	0.31	[{'connected_gene': 'PAPSS1', 'score': 10.57}, {'connected_gene': 'SGMS2', 'score': 6.45}, {'connected_gene': 'GC04P107803', 'score': 0.39}, {'connected_gene': 'GC04P107734', 'score': 0.21}]
chr4	GH04I107709	107709602	107710800	0.97	[{'connected_gene': 'PAPSS1', 'score': 14.77}, {'connected_gene': 'SGMS2', 'score': 6.36}, {'connected_gene': 'GC04P107697', 'score': 0.39}]
chr4	GH04I107817	107817631	107819588	0.54	[{'connected_gene': 'PAPSS1', 'score': 10.23}, {'connected_gene': 'SGMS2', 'score': 5.01}, {'connected_gene': 'GC04P107803', 'score': 0.39}]
chr4	GH04I107914	107913405	107913554	0.7	[{'connected_gene': 'PAPSS1', 'score': 10.54}, {'connected_gene': 'CYP2U1', 'score': 0.37}, {'connected_gene': 'RNU6-733P', 'score': 0.25}, {'connected_gene': 'LOC101929595', 'score': 0.2}, {'connected_gene': 'SGMS2', 'score': 0.17}]
chr4	GH04I107739	107739916	107741931	0.89	[{'connected_gene': 'PAPSS1', 'score': 34.66}, {'connected_gene': 'CYP2U1', 'score': 12.86}, {'connected_gene': 'GC04P107734', 'score': 0.44}, {'connected_gene': 'GC04P107803', 'score': 0.21}]
chr4	GH04I107624	107624187	107626436	0.57	[{'connected_gene': 'PAPSS1', 'score': 6.25}, {'connected_gene': 'LOC105377358', 'score': 0.29}, {'connected_gene': 'GC04P107697', 'score': 0.19}]
chr4	GH04I107617	107617800	107621192	0.51	[{'connected_gene': 'PAPSS1', 'score': 6.46}, {'connected_gene': 'LOC105377358', 'score': 0.31}, {'connected_gene': 'GC04P107697', 'score': 0.18}]
chr4	GH04I107683	107683985	107684114	0.68	[{'connected_gene': 'PAPSS1', 'score': 17.24}, {'connected_gene': 'GC04P107697', 'score': 0.39}, {'connected_gene': 'LOC105377358', 'score': 0.16}]
chr4	GH04I107692	107692890	107694129	0.94	[{'connected_gene': 'PAPSS1', 'score': 62.57}, {'connected_gene': 'GC04P107697', 'score': 0.77}, {'connected_gene': 'LOC105377358', 'score': 0.15}]
chr4	GH04I107689	107689766	107691150	0.59	[{'connected_gene': 'PAPSS1', 'score': 24.31}, {'connected_gene': 'GC04P107697', 'score': 0.44}, {'connected_gene': 'LOC105377358', 'score': 0.15}]
chr4	GH04I107718	107718465	107721971	1.99	[{'connected_gene': 'PAPSS1', 'score': 586.48}, {'connected_gene': 'GC04P107697', 'score': 0.34}]
chr4	GH04I107725	107725098	107726177	0.43	[{'connected_gene': 'PAPSS1', 'score': 21.12}, {'connected_gene': 'GC04P107728', 'score': 0.77}]
chr4	GH04I107823	107823593	107828573	2.15	[{'connected_gene': 'SGMS2', 'score': 550.77}, {'connected_gene': 'PAPSS1', 'score': 11.96}, {'connected_gene': 'GC04P107803', 'score': 0.34}, {'connected_gene': 'RNU6-733P', 'score': 0.26}]
chr4	GH04I107799	107799348	107801301	0.51	[{'connected_gene': 'SGMS2', 'score': 18.49}, {'connected_gene': 'PAPSS1', 'score': 16.36}, {'connected_gene': 'LOC101929595', 'score': 10.11}, {'connected_gene': 'GC04P107803', 'score': 0.77}, {'connected_gene': 'GC04P107734', 'score': 0.2}]
chr4	GH04I107801	107801391	107802534	0.43	[{'connected_gene': 'SGMS2', 'score': 19.11}, {'connected_gene': 'PAPSS1', 'score': 13.21}, {'connected_gene': 'GC04P107803', 'score': 0.77}, {'connected_gene': 'GC04P107734', 'score': 0.2}]
chr4	GH04I107632	107632635	107633816	0.72	[{'connected_gene': 'CYP2U1', 'score': 4.78}, {'connected_gene': 'PAPSS1', 'score': 4.75}, {'connected_gene': 'LOC105377358', 'score': 0.26}, {'connected_gene': 'GC04P107697', 'score': 0.21}]
chr4	GH04I107906	107906685	107906834	0.38	[{'connected_gene': 'CYP2U1', 'score': 12.4}, {'connected_gene': 'LOC101929595', 'score': 12.25}, {'connected_gene': 'PAPSS1', 'score': 10.43}, {'connected_gene': 'RNU6-733P', 'score': 0.28}, {'connected_gene': 'SGMS2', 'score': 0.18}]
chr4	GH04I107599	107599420	107601628	0.31	[{'connected_gene': 'LOC105377358', 'score': 0.39}, {'connected_gene': 'LOC105377357', 'score': 0.34}, {'connected_gene': 'GC04P107697', 'score': 0.15}, {'connected_gene': 'PAPSS1', 'score': 0.13}]
chr4	GH04I107694	107694365	107694500	0.2	[{'connected_gene': 'GC04P107697', 'score': 550.77}, {'connected_gene': 'PAPSS1', 'score': 12.46}, {'connected_gene': 'LOC105377358', 'score': 0.15}]