PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000263846	[[61282784, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61318855, 61318935], [61323575, 61323679], [61348261, 61348620]]	[[61286098, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61318855, 61318935], [61323575, 61323679], [61348261, 61348292]]
ENST00000540677	[[61285528, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61313502, 61313727], [61318855, 61318935], [61323575, 61323679], [61348261, 61348298]]	[[61286098, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61313502, 61313727], [61318855, 61318935], [61323575, 61323679], [61348261, 61348292]]
ENST00000539468	[[61286098, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61305615, 61305738], [61309682, 61310051], [61313502, 61313727], [61314006, 61314131], [61314648, 61314780], [61318855, 61318935], [61323575, 61323679], [61348261, 61348292]]	[[61314109, 61314131], [61314648, 61314780], [61318855, 61318935], [61323575, 61323679], [61348261, 61348292]]
ENST00000539246	[[61286098, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61305615, 61305738], [61309682, 61310051], [61314006, 61314131], [61314648, 61314780], [61318855, 61318935], [61323575, 61323679], [61348261, 61348292]]	[[61314109, 61314131], [61314648, 61314780], [61318855, 61318935], [61323575, 61323679], [61348261, 61348292]]
ENST00000539008	[[61286098, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61305615, 61305738], [61309682, 61310051], [61313502, 61313727], [61314648, 61314780], [61318855, 61318935], [61323575, 61323679], [61348261, 61348292]]	[[61286098, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61305615, 61305738], [61309682, 61310051], [61313502, 61313727], [61314648, 61314780], [61318855, 61318935], [61323575, 61323679], [61348261, 61348292]]
ENST00000542836	[[61286098, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61314648, 61314780], [61318855, 61318935], [61323575, 61323679], [61348261, 61348310]]	[[61286098, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61314648, 61314780], [61318855, 61318935], [61323575, 61323679], [61348261, 61348292]]
ENST00000542670	[[61286098, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61305615, 61305738], [61309682, 61310051], [61314648, 61314780], [61318855, 61318935], [61323575, 61323679], [61348261, 61348343]]	[[61286098, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61305615, 61305738], [61309682, 61310051], [61314648, 61314780], [61318855, 61318935], [61323575, 61323679], [61348261, 61348292]]
ENST00000535826	[[61286098, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61313502, 61313727], [61314648, 61314780], [61318855, 61318935], [61323575, 61323679], [61348261, 61348344]]	[[61286098, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61313502, 61313727], [61314648, 61314780], [61318855, 61318935], [61323575, 61323679], [61348261, 61348292]]
ENST00000545053	[[61295482, 61295657], [61300460, 61300596], [61318855, 61318935], [61323575, 61323679], [61348261, 61348344]]	[[61295482, 61295657], [61300460, 61300596], [61318855, 61318935], [61323575, 61323679], [61348261, 61348292]]
ENST00000540831	[[61291371, 61291413], [61291834, 61292004], [61292160, 61292285], [61295386, 61295657], [61300460, 61300575]]	None
NM_001300773	[[61281187, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61314648, 61314780], [61318855, 61318935], [61323575, 61323679], [61348261, 61348344]]	[[61286098, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61314648, 61314780], [61318855, 61318935], [61323575, 61323679], [61348261, 61348292]]
NM_001252065	[[61281187, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61313502, 61313727], [61318855, 61318935], [61323575, 61323679], [61348261, 61348344]]	[[61286098, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61313502, 61313727], [61318855, 61318935], [61323575, 61323679], [61348261, 61348292]]
NM_004200	[[61281187, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61318855, 61318935], [61323575, 61323679], [61348261, 61348344]]	[[61286098, 61286203], [61290546, 61290746], [61291298, 61291413], [61291834, 61292004], [61295386, 61295657], [61300460, 61300596], [61318855, 61318935], [61323575, 61323679], [61348261, 61348292]]

Promoter

Chrom	Start	End	Description
chr11	61285320	61285351	CAGE_peak_5_at_SYT7_5end
chr11	61348483	61348572	CAGE_peak_1_at_SYT7_5end
chr11	61348576	61348613	CAGE_peak_2_at_SYT7_5end
chr11	61348630	61348639	CAGE_peak_7_at_SYT7_5end
chr11	61348652	61348667	CAGE_peak_3_at_SYT7_5end
chr11	61348670	61348682	CAGE_peak_6_at_SYT7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I061608	61608500	61610490	0.89	[{'connected_gene': 'SYT7', 'score': 11.7}, {'connected_gene': 'DAGLA', 'score': 10.75}, {'connected_gene': 'TMEM216', 'score': 9.96}, {'connected_gene': 'RPLP0P2', 'score': 0.44}, {'connected_gene': 'LOC101927495', 'score': 0.34}]
chr11	GH11I061580	61580323	61582138	2.04	[{'connected_gene': 'SYT7', 'score': 550.44}, {'connected_gene': 'TMEM132A', 'score': 10.49}, {'connected_gene': 'TMEM216', 'score': 4.58}, {'connected_gene': 'LOC105369331', 'score': 0.44}, {'connected_gene': 'ENSG00000256443', 'score': 0.28}]
chr11	GH11I061516	61516092	61517561	0.92	[{'connected_gene': 'SYT7', 'score': 10.72}, {'connected_gene': 'DDB1', 'score': 9.4}, {'connected_gene': 'TKFC', 'score': 9.4}, {'connected_gene': 'ENSG00000279878', 'score': 0.44}, {'connected_gene': 'LRRC10B', 'score': 0.44}]
chr11	GH11I061566	61566952	61568233	1.28	[{'connected_gene': 'CPSF7', 'score': 19.67}, {'connected_gene': 'TMEM138', 'score': 16.41}, {'connected_gene': 'RN7SL23P', 'score': 15.74}, {'connected_gene': 'TMEM109', 'score': 11.03}, {'connected_gene': 'LOC105369331', 'score': 0.34}, {'connected_gene': 'SYT7', 'score': 0.34}, {'connected_gene': 'ENSG00000256443', 'score': 0.31}]
chr11	GH11I061625	61625573	61629241	1.01	[{'connected_gene': 'DAGLA', 'score': 17.28}, {'connected_gene': 'SYT7', 'score': 11.53}, {'connected_gene': 'MYRF', 'score': 10.78}, {'connected_gene': 'DKFZP434K028', 'score': 10.77}, {'connected_gene': 'GC11P061636', 'score': 0.44}, {'connected_gene': 'RPLP0P2', 'score': 0.39}]
chr11	GH11I061730	61730082	61730968	0.75	[{'connected_gene': 'DAGLA', 'score': 11.6}, {'connected_gene': 'SYT7', 'score': 10.46}, {'connected_gene': 'MYRF', 'score': 9.43}, {'connected_gene': 'PIR41833', 'score': 0.39}]
chr11	GH11I061693	61693679	61702169	2.14	[{'connected_gene': 'DAGLA', 'score': 567.51}, {'connected_gene': 'MYRF', 'score': 20.92}, {'connected_gene': 'DKFZP434K028', 'score': 19.36}, {'connected_gene': 'SYT7', 'score': 11.01}, {'connected_gene': 'FTH1', 'score': 9.15}, {'connected_gene': 'CYB561A3', 'score': 7.63}, {'connected_gene': 'VWCE', 'score': 4.66}, {'connected_gene': 'SDHAF2', 'score': 4.48}, {'connected_gene': 'DDB1', 'score': 4.33}, {'connected_gene': 'CPSF7', 'score': 4.26}, {'connected_gene': 'PIR41833', 'score': 0.25}]
chr11	GH11I061731	61731896	61734041	1.1	[{'connected_gene': 'DAGLA', 'score': 16.92}, {'connected_gene': 'MYRF', 'score': 13.12}, {'connected_gene': 'DKFZP434K028', 'score': 12.6}, {'connected_gene': 'TMEM258', 'score': 11.65}, {'connected_gene': 'FEN1', 'score': 11.65}, {'connected_gene': 'MIR611', 'score': 11.65}, {'connected_gene': 'SYT7', 'score': 10.46}, {'connected_gene': 'PIR41833', 'score': 0.39}]
chr11	GH11I061670	61670949	61671981	0.95	[{'connected_gene': 'MYRF', 'score': 21.31}, {'connected_gene': 'DKFZP434K028', 'score': 14.96}, {'connected_gene': 'SYT7', 'score': 10.73}, {'connected_gene': 'DAGLA', 'score': 0.44}, {'connected_gene': 'GC11M061648', 'score': 0.39}]
chr11	GH11I061444	61444893	61449798	1.03	[{'connected_gene': 'TMEM216', 'score': 13.61}, {'connected_gene': 'SYT7', 'score': 10.49}, {'connected_gene': 'DDB1', 'score': 10.41}, {'connected_gene': 'TKFC', 'score': 10.4}, {'connected_gene': 'SDHAF2', 'score': 7.21}, {'connected_gene': 'GC11P061443', 'score': 0.77}, {'connected_gene': 'RN7SL23P', 'score': 0.77}, {'connected_gene': 'ENSG00000256591', 'score': 0.37}, {'connected_gene': 'PPP1R32', 'score': 0.29}]
chr11	GH11I061507	61507806	61515843	1.67	[{'connected_gene': 'LRRC10B', 'score': 550.77}, {'connected_gene': 'SYT7', 'score': 11.41}, {'connected_gene': 'TMEM216', 'score': 10.34}, {'connected_gene': 'DDB1', 'score': 9.41}, {'connected_gene': 'TKFC', 'score': 9.4}, {'connected_gene': 'MIR4488', 'score': 0.77}, {'connected_gene': 'ENSG00000279878', 'score': 0.39}]
chr11	GH11I061586	61586342	61589084	1.26	[{'connected_gene': 'LOC105369331', 'score': 550.77}, {'connected_gene': 'SYT7', 'score': 550.77}, {'connected_gene': 'LOC101927495', 'score': 550.77}, {'connected_gene': 'ENSG00000256443', 'score': 0.25}]
chr11	GH11I061577	61577165	61578284	0.85	[{'connected_gene': 'LOC105369331', 'score': 0.39}, {'connected_gene': 'SYT7', 'score': 0.39}, {'connected_gene': 'ENSG00000256443', 'score': 0.28}]
chr11	GH11I061581	61580029	61580178	0.46	[{'connected_gene': 'LOC105369331', 'score': 0.44}, {'connected_gene': 'SYT7', 'score': 0.44}, {'connected_gene': 'ENSG00000256443', 'score': 0.28}]
chr11	GH11I061579	61579509	61579658	0.43	[{'connected_gene': 'LOC105369331', 'score': 0.44}, {'connected_gene': 'SYT7', 'score': 0.44}, {'connected_gene': 'ENSG00000256443', 'score': 0.28}]
chr11	GH11I061638	61638400	61638678	0.95	[{'connected_gene': 'GC11P061636', 'score': 550.77}, {'connected_gene': 'GC11P061637', 'score': 550.77}, {'connected_gene': 'SYT7', 'score': 11.34}, {'connected_gene': 'DAGLA', 'score': 10.94}, {'connected_gene': 'DDB1', 'score': 9.41}, {'connected_gene': 'TKFC', 'score': 9.41}, {'connected_gene': 'ENSG00000255947', 'score': 0.37}, {'connected_gene': 'RPLP0P2', 'score': 0.34}]
chr11	GH11I061534	61534589	61534738	0.63	[{'connected_gene': 'ENSG00000256443', 'score': 0.44}, {'connected_gene': 'ENSG00000279878', 'score': 0.44}, {'connected_gene': 'SYT7', 'score': 0.23}]
chr11	GH11I061532	61532249	61532398	0.83	[{'connected_gene': 'ENSG00000256443', 'score': 0.44}, {'connected_gene': 'ENSG00000279878', 'score': 0.44}, {'connected_gene': 'SYT7', 'score': 0.22}]
chr11	GH11I061533	61533529	61533758	0.72	[{'connected_gene': 'ENSG00000256443', 'score': 0.44}, {'connected_gene': 'ENSG00000279878', 'score': 0.44}, {'connected_gene': 'SYT7', 'score': 0.23}]
chr11	GH11I061539	61539273	61542474	0.88	[{'connected_gene': 'ENSG00000256443', 'score': 550.77}, {'connected_gene': 'LRRC10B', 'score': 12.41}, {'connected_gene': 'SYT7', 'score': 11.59}, {'connected_gene': 'DDB1', 'score': 9.77}, {'connected_gene': 'TKFC', 'score': 9.33}, {'connected_gene': 'ZP1', 'score': 4.93}, {'connected_gene': 'ENSG00000279878', 'score': 0.39}]
chr11	GH11I061544	61544303	61547279	0.71	[{'connected_gene': 'ENSG00000256443', 'score': 0.77}, {'connected_gene': 'LOC105369331', 'score': 0.26}, {'connected_gene': 'SYT7', 'score': 0.26}]
chr11	GH11I061551	61551749	61551928	0.77	[{'connected_gene': 'ENSG00000256443', 'score': 0.44}, {'connected_gene': 'LOC105369331', 'score': 0.28}, {'connected_gene': 'SYT7', 'score': 0.28}]
chr11	GH11I061553	61553769	61553918	0.52	[{'connected_gene': 'ENSG00000256443', 'score': 0.39}, {'connected_gene': 'LOC105369331', 'score': 0.29}, {'connected_gene': 'SYT7', 'score': 0.29}]
chr11	GH11I061543	61543989	61544198	0.63	[{'connected_gene': 'ENSG00000256443', 'score': 550.77}, {'connected_gene': 'LOC105369331', 'score': 0.26}, {'connected_gene': 'SYT7', 'score': 0.26}]