PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000445369	[[3062456, 3064506]]	[[3063363, 3064017]]
NM_020982	[[3062456, 3064506]]	[[3063363, 3064017]]

Promoter

Chrom	Start	End	Description
chr16	3062916	3062930	CAGE_peak_1_at_CLDN9_5end
chr16	3063137	3063169	CAGE_peak_3_at_CLDN9_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I003013	3013760	3013903	0.6	[{'connected_gene': 'CLDN9', 'score': 550.77}, {'connected_gene': 'PIR52190', 'score': 550.77}, {'connected_gene': 'TNFRSF12A', 'score': 0.77}]
chr16	GH16I003012	3012035	3013736	1.46	[{'connected_gene': 'CLDN9', 'score': 550.77}, {'connected_gene': 'PIR52190', 'score': 550.77}, {'connected_gene': 'LOC107984895', 'score': 8.07}, {'connected_gene': 'IL32', 'score': 5.22}, {'connected_gene': 'PGP', 'score': 4.55}, {'connected_gene': 'TNFRSF12A', 'score': 0.44}]
chr16	GH16I003017	3017001	3018829	1.49	[{'connected_gene': 'TNFRSF12A', 'score': 550.77}, {'connected_gene': 'CLDN6', 'score': 550.77}, {'connected_gene': 'BICDL2', 'score': 24.92}, {'connected_gene': 'LOC107984895', 'score': 6.05}, {'connected_gene': 'CLDN9', 'score': 0.44}]
chr16	GH16I003003	3003600	3012032	2.06	[{'connected_gene': 'LOC107984895', 'score': 588.75}, {'connected_gene': 'LOC105371056', 'score': 550.77}, {'connected_gene': 'CREBBP', 'score': 51.42}, {'connected_gene': 'ZNF597', 'score': 49.41}, {'connected_gene': 'MMP25', 'score': 49.3}, {'connected_gene': 'AMDHD2', 'score': 39.4}, {'connected_gene': 'SRRM2', 'score': 31.21}, {'connected_gene': 'ZNF598', 'score': 31.07}, {'connected_gene': 'ZNF263', 'score': 28.3}, {'connected_gene': 'ZNF200', 'score': 23.9}, {'connected_gene': 'THOC6', 'score': 22.14}, {'connected_gene': 'TRAF7', 'score': 21.84}, {'connected_gene': 'E4F1', 'score': 13.22}, {'connected_gene': 'LOC105371055', 'score': 13.16}, {'connected_gene': 'ENSG00000261938', 'score': 12.81}, {'connected_gene': 'TSC2', 'score': 11.28}, {'connected_gene': 'SNORD60', 'score': 11.09}, {'connected_gene': 'MTCO1P28', 'score': 10.25}, {'connected_gene': 'LOC105371050', 'score': 9.83}, {'connected_gene': 'BICDL2', 'score': 7.82}, {'connected_gene': 'CLDN9', 'score': 7.14}, {'connected_gene': 'ENSG00000270168', 'score': 6.6}, {'connected_gene': 'PAQR4', 'score': 6.38}, {'connected_gene': 'LOC100128770', 'score': 6.03}, {'connected_gene': 'MEFV', 'score': 5.6}, {'connected_gene': 'PDPK1', 'score': 5.42}, {'connected_gene': 'ATP6V0C', 'score': 5.15}, {'connected_gene': 'FLYWCH1', 'score': 5.04}, {'connected_gene': 'PRSS22', 'score': 3.67}, {'connected_gene': 'PRSS33', 'score': 3.12}, {'connected_gene': 'NAA60', 'score': 2.16}, {'connected_gene': 'ZSCAN32', 'score': 1.34}, {'connected_gene': 'ENSG00000262362', 'score': 0.77}, {'connected_gene': 'PIR52190', 'score': 0.77}]
chr16	GH16I003052	3052601	3056271	0.97	[{'connected_gene': 'GC16P003447', 'score': 550.77}, {'connected_gene': 'MMP25', 'score': 29.89}, {'connected_gene': 'BICDL2', 'score': 22.63}, {'connected_gene': 'IL32', 'score': 15.5}, {'connected_gene': 'CLDN6', 'score': 12.46}, {'connected_gene': 'TNFRSF12A', 'score': 12.45}, {'connected_gene': 'ZNF205', 'score': 12.19}, {'connected_gene': 'CLDN9', 'score': 11.67}, {'connected_gene': 'PKMYT1', 'score': 11.38}, {'connected_gene': 'MMP25-AS1', 'score': 0.77}]