PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000442070	[[124622025, 124622582], [124624109, 124624236], [124624536, 124624659], [124631980, 124632186]]	[[124622476, 124622582], [124624109, 124624236], [124624536, 124624659], [124631980, 124632050]]
ENST00000444566	[[124622478, 124622582], [124624109, 124624236], [124624536, 124624659], [124631980, 124632186]]	[[124622478, 124622582], [124624109, 124624236], [124624536, 124624659], [124631980, 124632050]]
ENST00000485116	[[124623018, 124623857], [124624109, 124624236], [124624536, 124624659], [124626102, 124626258], [124626436, 124627433]]	None
ENST00000417453	[[124623018, 124623857], [124624109, 124624236], [124624525, 124624659], [124626102, 124626258], [124626436, 124626638], [124628244, 124628423], [124631980, 124632176]]	[[124624528, 124624659], [124626102, 124626258], [124626436, 124626638], [124628244, 124628423], [124631980, 124632050]]
ENST00000278927	[[124623018, 124623857], [124624109, 124624236], [124624536, 124624659], [124626102, 124626258], [124626436, 124626638], [124628244, 124628423], [124631980, 124632180]]	[[124623541, 124623857], [124624109, 124624236], [124624536, 124624659], [124626102, 124626258], [124626436, 124626638], [124628244, 124628423], [124631980, 124632050]]
ENST00000464067	[[124623094, 124623857], [124624109, 124624236], [124624536, 124624659], [124626102, 124627425]]	None
ENST00000435477	[[124624140, 124624236], [124624536, 124624659], [124626102, 124626258], [124631980, 124632186]]	[[124624140, 124624236], [124624536, 124624659], [124626102, 124626258], [124631980, 124632050]]
NM_138961	[[124623018, 124623857], [124624109, 124624236], [124624536, 124624659], [124626102, 124626258], [124626436, 124626638], [124628244, 124628423], [124631980, 124632223]]	[[124623541, 124623857], [124624109, 124624236], [124624536, 124624659], [124626102, 124626258], [124626436, 124626638], [124628244, 124628423], [124631980, 124632050]]

Promoter

Chrom	Start	End	Description
chr11	124632179	124632199	CAGE_peak_1_at_ESAM_5end
chr11	124633286	124633290	CAGE_peak_2_at_ESAM_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I124757	124757925	124764348	2.38	[{'connected_gene': 'ESAM', 'score': 563.31}, {'connected_gene': 'ROBO4', 'score': 17.27}, {'connected_gene': 'VSIG2', 'score': 5.77}, {'connected_gene': 'SPA17', 'score': 5.7}, {'connected_gene': 'NRGN', 'score': 5.69}, {'connected_gene': 'LOC101929340', 'score': 0.77}, {'connected_gene': 'GC11P124760', 'score': 0.77}]
chr11	GH11I124776	124776266	124776325	0.5	[{'connected_gene': 'MSANTD2', 'score': 550.34}, {'connected_gene': 'VSIG2', 'score': 5.57}, {'connected_gene': 'ESAM', 'score': 0.39}, {'connected_gene': 'ENSG00000254509', 'score': 0.39}]
chr11	GH11I124836	124836087	124838070	0.94	[{'connected_gene': 'ROBO3', 'score': 11.97}, {'connected_gene': 'MSANTD2', 'score': 11.93}, {'connected_gene': 'LOC100507283', 'score': 11.93}, {'connected_gene': 'SIAE', 'score': 11.35}, {'connected_gene': 'SPA17', 'score': 11.33}, {'connected_gene': 'ESAM', 'score': 11.0}, {'connected_gene': 'LOC101929340', 'score': 10.99}, {'connected_gene': 'VSIG2', 'score': 10.98}, {'connected_gene': 'ENSG00000255045', 'score': 10.97}, {'connected_gene': 'NRGN', 'score': 10.86}, {'connected_gene': 'ROBO4', 'score': 9.57}, {'connected_gene': 'CCDC15', 'score': 9.3}, {'connected_gene': 'GC11M124844', 'score': 0.44}, {'connected_gene': 'GC11M124812', 'score': 0.34}]
chr11	GH11I124717	124717269	124718600	1.29	[{'connected_gene': 'SPA17', 'score': 21.24}, {'connected_gene': 'ESAM', 'score': 15.22}, {'connected_gene': 'NRGN', 'score': 14.11}, {'connected_gene': 'ENSG00000255045', 'score': 12.22}, {'connected_gene': 'VSIG2', 'score': 12.19}, {'connected_gene': 'SIAE', 'score': 12.18}, {'connected_gene': 'LOC101929340', 'score': 12.17}, {'connected_gene': 'ROBO3', 'score': 9.39}, {'connected_gene': 'ROBO4', 'score': 1.67}, {'connected_gene': 'GC11P124740', 'score': 0.34}]
chr11	GH11I124768	124768953	124772270	0.88	[{'connected_gene': 'NRGN', 'score': 12.52}, {'connected_gene': 'SIAE', 'score': 11.69}, {'connected_gene': 'SPA17', 'score': 11.65}, {'connected_gene': 'LOC100507283', 'score': 11.23}, {'connected_gene': 'MSANTD2', 'score': 11.21}, {'connected_gene': 'ROBO3', 'score': 10.13}, {'connected_gene': 'VSIG2', 'score': 5.88}, {'connected_gene': 'ESAM', 'score': 0.44}, {'connected_gene': 'ENSG00000254509', 'score': 0.34}]
chr11	GH11I124752	124752801	124753200	0.69	[{'connected_gene': 'VSIG2', 'score': 550.77}, {'connected_gene': 'ESAM', 'score': 0.44}, {'connected_gene': 'ENSG00000255045', 'score': 0.44}]
chr11	GH11I124777	124777305	124777454	0.2	[{'connected_gene': 'ENSG00000254509', 'score': 0.39}, {'connected_gene': 'ESAM', 'score': 0.37}, {'connected_gene': 'MSANTD2', 'score': 0.34}]
chr11	GH11I124793	124793785	124793934	0.64	[{'connected_gene': 'ENSG00000279342', 'score': 550.77}, {'connected_gene': 'ESAM', 'score': 11.72}, {'connected_gene': 'LOC101929340', 'score': 11.72}, {'connected_gene': 'VSIG2', 'score': 11.68}, {'connected_gene': 'ENSG00000255045', 'score': 11.67}, {'connected_gene': 'SIAE', 'score': 11.44}, {'connected_gene': 'SPA17', 'score': 11.42}, {'connected_gene': 'NRGN', 'score': 10.61}, {'connected_gene': 'ROBO3', 'score': 9.96}, {'connected_gene': 'LOC100507283', 'score': 6.07}, {'connected_gene': 'MSANTD2', 'score': 0.44}]