PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr19	20150029	20150078	CAGE_peak_3_at_ZNF682_5end
chr19	20150268	20150298	CAGE_peak_2_at_ZNF682_5end
chr19	20150301	20150321	CAGE_peak_1_at_ZNF682_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I020067	20067128	20069161	0.2	[{'connected_gene': 'ZNF682', 'score': 11.95}, {'connected_gene': 'GC19P020258', 'score': 0.77}, {'connected_gene': 'ZNF90', 'score': 0.44}]
chr19	GH19I020102	20102473	20103849	0.38	[{'connected_gene': 'ZNF682', 'score': 10.98}, {'connected_gene': 'ZNF506', 'score': 8.27}, {'connected_gene': 'ZNF253', 'score': 4.19}, {'connected_gene': 'PIR56356', 'score': 0.77}, {'connected_gene': 'PIR62950', 'score': 0.39}, {'connected_gene': 'ZNF90', 'score': 0.31}]
chr19	GH19I020038	20038244	20040161	1.85	[{'connected_gene': 'ZNF682', 'score': 580.75}, {'connected_gene': 'LINC00663', 'score': 11.64}, {'connected_gene': 'LOC101928960', 'score': 0.44}]
chr19	GH19I020036	20036829	20036888	0.5	[{'connected_gene': 'ZNF682', 'score': 550.77}, {'connected_gene': 'LOC101928960', 'score': 0.77}]
chr19	GH19I020037	20037801	20038200	0.2	[{'connected_gene': 'ZNF682', 'score': 550.77}, {'connected_gene': 'LOC101928960', 'score': 0.77}]
chr19	GH19I020367	20367792	20368631	0.75	[{'connected_gene': 'ZNF682', 'score': 1.34}, {'connected_gene': 'ZNF737', 'score': 1.29}, {'connected_gene': 'PIR36651', 'score': 0.77}, {'connected_gene': 'LOC105372315', 'score': 0.39}, {'connected_gene': 'BNIP3P21', 'score': 0.39}, {'connected_gene': 'ZNF826P', 'score': 0.22}]
chr19	GH19I020226	20226824	20227036	0.38	[{'connected_gene': 'ZNF486', 'score': 8.25}, {'connected_gene': 'ZNF90', 'score': 4.82}, {'connected_gene': 'ZNF93', 'score': 2.92}, {'connected_gene': 'ZNF682', 'score': 2.89}, {'connected_gene': 'ENSG00000280079', 'score': 0.77}, {'connected_gene': 'LOC105372310', 'score': 0.39}, {'connected_gene': 'ENSG00000267383', 'score': 0.16}]
chr19	GH19I020000	20000154	20000283	0.22	[{'connected_gene': 'TSSK6', 'score': 18.23}, {'connected_gene': 'GC19M022318', 'score': 0.44}, {'connected_gene': 'VN1R77P', 'score': 0.34}, {'connected_gene': 'ZNF682', 'score': 0.28}, {'connected_gene': 'BNIP3P12', 'score': 0.22}]
chr19	GH19I019865	19865212	19868235	2.28	[{'connected_gene': 'ZNF253', 'score': 558.67}, {'connected_gene': 'ZNF93', 'score': 20.23}, {'connected_gene': 'ZNF506', 'score': 19.5}, {'connected_gene': 'ATP13A1', 'score': 15.16}, {'connected_gene': 'MEF2B', 'score': 13.41}, {'connected_gene': 'NR2C2AP', 'score': 13.06}, {'connected_gene': 'GATAD2A', 'score': 12.14}, {'connected_gene': 'ZNF14', 'score': 10.42}, {'connected_gene': 'PBX4', 'score': 9.42}, {'connected_gene': 'VN1R77P', 'score': 5.64}, {'connected_gene': 'ZNF101', 'score': 2.87}, {'connected_gene': 'ZNF682', 'score': 2.82}, {'connected_gene': 'LPAR2', 'score': 1.35}, {'connected_gene': 'BNIP3P10', 'score': 0.77}]
chr19	GH19I020237	20237042	20239408	1.13	[{'connected_gene': 'LOC105372310', 'score': 550.77}, {'connected_gene': 'LOC102724427', 'score': 16.06}, {'connected_gene': 'LOC284441', 'score': 5.99}, {'connected_gene': 'ZNF682', 'score': 5.08}, {'connected_gene': 'ENSG00000280079', 'score': 0.37}, {'connected_gene': 'ENSG00000267383', 'score': 0.18}]
chr19	GH19I020051	20051363	20053310	1.39	[{'connected_gene': 'LOC105372309', 'score': 550.77}, {'connected_gene': 'ZNF682', 'score': 30.5}, {'connected_gene': 'ZNF253', 'score': 1.34}, {'connected_gene': 'ZNF506', 'score': 1.33}, {'connected_gene': 'GC19M022339', 'score': 0.44}]
chr19	GH19I020077	20077335	20084093	1.89	[{'connected_gene': 'LOC100419301', 'score': 550.77}, {'connected_gene': 'ZNF90', 'score': 550.77}, {'connected_gene': 'ZNF682', 'score': 11.74}, {'connected_gene': 'BNIP3P15', 'score': 5.0}, {'connected_gene': 'CILP2', 'score': 4.69}, {'connected_gene': 'MEF2B', 'score': 4.35}, {'connected_gene': 'ZNF506', 'score': 4.34}, {'connected_gene': 'BNIP3P14', 'score': 0.44}]
chr19	GH19I019997	19997772	19997921	0.43	[{'connected_gene': 'GC19M022318', 'score': 0.39}, {'connected_gene': 'VN1R77P', 'score': 0.37}, {'connected_gene': 'ZNF682', 'score': 0.26}, {'connected_gene': 'BNIP3P12', 'score': 0.23}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000596019	[[20107866, 20108072], [20133812, 20133908], [20135058, 20135185], [20150151, 20150274]]	[[20108049, 20108072], [20133812, 20133908], [20135058, 20135185], [20150151, 20150154]]
ENST00000397162	[[20115226, 20118084], [20133812, 20133908], [20135058, 20135185], [20149981, 20150064]]	[[20116813, 20118084], [20133812, 20133908], [20135058, 20135092]]
ENST00000397165	[[20115226, 20118084], [20133812, 20133908], [20135058, 20135185], [20150151, 20150315]]	[[20116813, 20118084], [20133812, 20133908], [20135058, 20135185], [20150151, 20150154]]
ENST00000594127	[[20115228, 20115556], [20117949, 20118071]]	[[20115545, 20115556], [20117949, 20118071]]
ENST00000601365	[[20115228, 20118997]]	None
ENST00000602079	[[20115228, 20115556], [20133812, 20133908], [20135058, 20135108]]	[[20115545, 20115556], [20133812, 20133908], [20135058, 20135108]]
ENST00000358523	[[20116475, 20118084], [20133812, 20133908], [20135058, 20135185], [20141516, 20141691], [20141801, 20141922], [20149981, 20150014]]	[[20116813, 20118084], [20133812, 20133908], [20135058, 20135092]]
ENST00000595736	[[20116475, 20118084], [20150151, 20150252]]	[[20116813, 20118082]]
ENST00000597972	[[20116812, 20118084], [20133812, 20133908], [20135058, 20135228]]	[[20116813, 20118084], [20133812, 20133908], [20135058, 20135206]]
ENST00000601100	[[20117802, 20118084], [20133812, 20133908], [20135058, 20135185], [20149981, 20150085]]	[[20117802, 20118084], [20133812, 20133908], [20135058, 20135092]]
ENST00000593468	[[20117910, 20118084], [20126582, 20126646], [20133812, 20133908], [20135058, 20135185], [20150151, 20150271]]	[[20118062, 20118084], [20126582, 20126646], [20133812, 20133908], [20135058, 20135185], [20150151, 20150154]]
ENST00000595534	[[20117964, 20118084], [20125983, 20126075], [20126582, 20126651], [20133812, 20133908], [20135058, 20135185], [20150151, 20150250]]	[[20126646, 20126651], [20133812, 20133908], [20135058, 20135185], [20150151, 20150154]]
ENST00000599240	[[20141525, 20141691], [20141801, 20141922], [20150151, 20150259]]	None
NM_001077349	[[20115226, 20118084], [20133812, 20133908], [20135058, 20135185], [20149981, 20150064]]	[[20116813, 20118084], [20133812, 20133908], [20135058, 20135092]]
NM_033196	[[20115226, 20118084], [20133812, 20133908], [20135058, 20135185], [20150151, 20150277]]	[[20116813, 20118084], [20133812, 20133908], [20135058, 20135185], [20150151, 20150154]]