PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368171	[[158149736, 158149952], [158150608, 158150952], [158151244, 158151511], [158151821, 158152100], [158152667, 158152946], [158153725, 158153825], [158153918, 158154686]]	[[158150891, 158150952], [158151244, 158151511], [158151821, 158152100], [158152667, 158152946], [158153725, 158153825], [158153918, 158153940]]
NM_001319145	[[158149736, 158149952], [158150608, 158150952], [158151244, 158151511], [158151821, 158152100], [158153725, 158153825], [158153918, 158154686]]	[[158150891, 158150952], [158151244, 158151511], [158151821, 158152100], [158153725, 158153825], [158153918, 158153940]]
NM_001766	[[158149736, 158149952], [158150608, 158150952], [158151244, 158151511], [158151821, 158152100], [158152667, 158152946], [158153725, 158153825], [158153918, 158156217]]	[[158150891, 158150952], [158151244, 158151511], [158151821, 158152100], [158152667, 158152946], [158153725, 158153825], [158153918, 158153940]]

Promoter

Chrom	Start	End	Description
chr1	158150653	158150699	CAGE_peak_1_at_CD1D_5end
chr1	158150706	158150732	CAGE_peak_2_at_CD1D_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I158247	158247601	158249800	1.3	[{'connected_gene': 'CD1A', 'score': 550.77}, {'connected_gene': 'CD1C', 'score': 14.02}, {'connected_gene': 'CD1E', 'score': 5.94}, {'connected_gene': 'CD1D', 'score': 4.5}, {'connected_gene': 'CD1B', 'score': 3.81}, {'connected_gene': 'OR10T2', 'score': 2.31}, {'connected_gene': 'GC01P158261', 'score': 0.44}, {'connected_gene': 'GC01P158260', 'score': 0.44}]
chr1	GH01I158154	158154001	158154600	0.6	[{'connected_gene': 'CD1D', 'score': 11.4}, {'connected_gene': 'ELL2P1', 'score': 11.4}, {'connected_gene': 'CD1A', 'score': 10.19}, {'connected_gene': 'CD1C', 'score': 9.63}, {'connected_gene': 'LINC01704', 'score': 0.44}, {'connected_gene': 'LOC105371460', 'score': 0.39}]
chr1	GH01I158177	158177391	158178543	1.52	[{'connected_gene': 'CD1D', 'score': 555.18}, {'connected_gene': 'ELL2P1', 'score': 550.77}, {'connected_gene': 'ENSG00000176320', 'score': 5.76}, {'connected_gene': 'LINC01704', 'score': 0.29}]
chr1	GH01I158176	158176909	158177279	0.66	[{'connected_gene': 'CD1D', 'score': 550.77}, {'connected_gene': 'ELL2P1', 'score': 550.77}, {'connected_gene': 'LINC01704', 'score': 0.29}]
chr1	GH01I158179	158179285	158181860	2.02	[{'connected_gene': 'CD1D', 'score': 550.77}, {'connected_gene': 'ENSG00000176320', 'score': 5.73}, {'connected_gene': 'ELL2P1', 'score': 0.77}, {'connected_gene': 'GC01M158195', 'score': 0.37}]
chr1	GH01I158188	158188564	158189924	0.31	[{'connected_gene': 'CD1D', 'score': 17.95}, {'connected_gene': 'GC01M158195', 'score': 0.44}, {'connected_gene': 'ELL2P1', 'score': 0.39}]
chr1	GH01I158162	158162601	158163800	0.71	[{'connected_gene': 'CD1D', 'score': 0.39}, {'connected_gene': 'LINC01704', 'score': 0.37}, {'connected_gene': 'LOC105371460', 'score': 0.34}]
chr1	GH01I158144	158144771	158150970	1.34	[{'connected_gene': 'LINC01704', 'score': 550.77}, {'connected_gene': 'CD1D', 'score': 11.35}, {'connected_gene': 'ELL2P1', 'score': 11.35}, {'connected_gene': 'KIRREL1', 'score': 9.89}, {'connected_gene': 'OR10R2', 'score': 3.38}, {'connected_gene': 'OR10X1', 'score': 1.33}, {'connected_gene': 'LOC105371460', 'score': 0.44}]
chr1	GH01I158818	158818401	158820469	1.61	[{'connected_gene': 'MNDA', 'score': 17.09}, {'connected_gene': 'CD1D', 'score': 4.5}, {'connected_gene': 'PYHIN1', 'score': 1.31}, {'connected_gene': 'IFI16', 'score': 1.21}, {'connected_gene': 'OR10AA1P', 'score': 0.39}]
chr1	GH01I158208	158208239	158209907	0.2	[{'connected_gene': 'ENSG00000176320', 'score': 15.86}, {'connected_gene': 'CD1D', 'score': 15.84}, {'connected_gene': 'ELL2P1', 'score': 10.81}, {'connected_gene': 'CD1B', 'score': 10.17}, {'connected_gene': 'GC01P158217', 'score': 0.44}]
chr1	GH01I158185	158185672	158186981	0.52	[{'connected_gene': 'ENSG00000176320', 'score': 6.12}, {'connected_gene': 'GC01M158195', 'score': 0.44}, {'connected_gene': 'CD1D', 'score': 0.44}, {'connected_gene': 'ELL2P1', 'score': 0.44}]