PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr1	158322941	158322963	CAGE_peak_20_at_CD1E_5end
chr1	158323055	158323063	CAGE_peak_28_at_CD1E_5end
chr1	158323158	158323175	CAGE_peak_13_at_CD1E_5end
chr1	158323183	158323188	CAGE_peak_21_at_CD1E_5end
chr1	158323215	158323229	CAGE_peak_18_at_CD1E_5end
chr1	158323244	158323269	CAGE_peak_3_at_CD1E_5end
chr1	158323271	158323294	CAGE_peak_7_at_CD1E_5end
chr1	158323296	158323301	CAGE_peak_17_at_CD1E_5end
chr1	158323304	158323324	CAGE_peak_9_at_CD1E_5end
chr1	158323344	158323347	CAGE_peak_35_at_CD1E_5end
chr1	158323376	158323381	CAGE_peak_24_at_CD1E_5end
chr1	158323491	158323497	CAGE_peak_25_at_CD1E_5end
chr1	158323605	158323616	CAGE_peak_4_at_CD1E_5end
chr1	158323639	158323693	CAGE_peak_1_at_CD1E_5end
chr1	158323755	158323764	CAGE_peak_5_at_CD1E_5end
chr1	158323920	158323926	CAGE_peak_23_at_CD1E_5end
chr1	158323949	158323968	CAGE_peak_14_at_CD1E_5end
chr1	158324625	158324644	CAGE_peak_10_at_CD1E_5end
chr1	158324656	158324678	CAGE_peak_2_at_CD1E_5end
chr1	158324697	158324709	CAGE_peak_8_at_CD1E_5end
chr1	158324726	158324737	CAGE_peak_11_at_CD1E_5end
chr1	158325287	158325302	CAGE_peak_6_at_CD1E_5end
chr1	158325422	158325433	CAGE_peak_16_at_CD1E_5end
chr1	158325748	158325765	CAGE_peak_12_at_CD1E_5end
chr1	158326285	158326296	CAGE_peak_15_at_CD1E_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I158271	158271700	158275823	0.52	[{'connected_gene': 'CD1A', 'score': 11.99}, {'connected_gene': 'CD1E', 'score': 5.11}, {'connected_gene': 'HMGN1P5', 'score': 0.44}, {'connected_gene': 'GC01P158286', 'score': 0.39}]
chr1	GH01I158271	158271700	158275823	0.52	[{'connected_gene': 'CD1A', 'score': 11.99}, {'connected_gene': 'CD1E', 'score': 5.11}, {'connected_gene': 'HMGN1P5', 'score': 0.44}, {'connected_gene': 'GC01P158286', 'score': 0.39}]
chr1	GH01I158247	158247601	158249800	1.3	[{'connected_gene': 'CD1A', 'score': 550.77}, {'connected_gene': 'CD1C', 'score': 14.02}, {'connected_gene': 'CD1E', 'score': 5.94}, {'connected_gene': 'CD1D', 'score': 4.5}, {'connected_gene': 'CD1B', 'score': 3.81}, {'connected_gene': 'OR10T2', 'score': 2.31}, {'connected_gene': 'GC01P158261', 'score': 0.44}, {'connected_gene': 'GC01P158260', 'score': 0.44}]
chr1	GH01I158247	158247601	158249800	1.3	[{'connected_gene': 'CD1A', 'score': 550.77}, {'connected_gene': 'CD1C', 'score': 14.02}, {'connected_gene': 'CD1E', 'score': 5.94}, {'connected_gene': 'CD1D', 'score': 4.5}, {'connected_gene': 'CD1B', 'score': 3.81}, {'connected_gene': 'OR10T2', 'score': 2.31}, {'connected_gene': 'GC01P158261', 'score': 0.44}, {'connected_gene': 'GC01P158260', 'score': 0.44}]
chr1	GH01I158327	158327609	158327734	0.42	[{'connected_gene': 'CD1E', 'score': 7.92}, {'connected_gene': 'CD1B', 'score': 7.4}, {'connected_gene': 'CD1C', 'score': 4.31}, {'connected_gene': 'GC01P158293', 'score': 0.29}, {'connected_gene': 'GC01P158292', 'score': 0.29}]
chr1	GH01I158333	158333888	158334071	0.46	[{'connected_gene': 'CD1E', 'score': 22.01}, {'connected_gene': 'CD1B', 'score': 8.18}, {'connected_gene': 'OR6Y1', 'score': 3.55}, {'connected_gene': 'OR10K2', 'score': 2.75}, {'connected_gene': 'OR6K6', 'score': 2.44}, {'connected_gene': 'OR10T2', 'score': 2.22}, {'connected_gene': 'CD1C', 'score': 1.67}]
chr1	GH01I158395	158395091	158397072	0.2	[{'connected_gene': 'CD1E', 'score': 5.59}, {'connected_gene': 'OR10T2', 'score': 0.77}]
chr1	GH01I158353	158353801	158354200	1.01	[{'connected_gene': 'CD1E', 'score': 550.77}, {'connected_gene': 'OR10T2', 'score': 0.25}]
chr1	GH01I158389	158389129	158394204	0.2	[{'connected_gene': 'CD1E', 'score': 6.33}, {'connected_gene': 'OR10T2', 'score': 0.44}]
chr1	GH01I158254	158254375	158254434	0.7	[{'connected_gene': 'CD1A', 'score': 550.44}, {'connected_gene': 'GC01P158261', 'score': 0.77}, {'connected_gene': 'GC01P158260', 'score': 0.77}]
chr1	GH01I158255	158254047	158254106	0.7	[{'connected_gene': 'CD1A', 'score': 550.44}, {'connected_gene': 'GC01P158261', 'score': 0.77}, {'connected_gene': 'GC01P158260', 'score': 0.77}]
chr1	GH01I158154	158154001	158154600	0.6	[{'connected_gene': 'CD1D', 'score': 11.4}, {'connected_gene': 'ELL2P1', 'score': 11.4}, {'connected_gene': 'CD1A', 'score': 10.19}, {'connected_gene': 'CD1C', 'score': 9.63}, {'connected_gene': 'LINC01704', 'score': 0.44}, {'connected_gene': 'LOC105371460', 'score': 0.39}]
chr1	GH01I158324	158324401	158325000	0.94	[{'connected_gene': 'CD1C', 'score': 10.57}, {'connected_gene': 'CD1A', 'score': 10.41}, {'connected_gene': 'CD1B', 'score': 0.44}, {'connected_gene': 'GC01P158293', 'score': 0.29}, {'connected_gene': 'GC01P158292', 'score': 0.29}]
chr1	GH01I158334	158334252	158335389	0.31	[{'connected_gene': 'CD1C', 'score': 10.23}, {'connected_gene': 'CD1B', 'score': 0.77}, {'connected_gene': 'CD1E', 'score': 0.37}]
chr1	GH01I158244	158244862	158246281	0.2	[{'connected_gene': 'CD1C', 'score': 11.39}, {'connected_gene': 'SPTA1', 'score': 9.58}, {'connected_gene': 'ENSG00000176320', 'score': 6.23}, {'connected_gene': 'CD1A', 'score': 0.77}, {'connected_gene': 'GC01P158234', 'score': 0.39}]
chr1	GH01I158335	158333401	158333600	0.51	[{'connected_gene': 'CD1B', 'score': 550.77}, {'connected_gene': 'CD1E', 'score': 0.37}]
chr1	GH01I158331	158331521	158331580	0.7	[{'connected_gene': 'CD1B', 'score': 550.77}, {'connected_gene': 'CD1E', 'score': 0.34}]
chr1	GH01I158361	158361950	158366193	0.31	[{'connected_gene': 'CD1B', 'score': 11.17}, {'connected_gene': 'OR10T2', 'score': 11.05}, {'connected_gene': 'CD1C', 'score': 10.47}, {'connected_gene': 'OR10K2', 'score': 10.21}, {'connected_gene': 'OR10X1', 'score': 9.48}, {'connected_gene': 'CD1E', 'score': 5.13}]
chr1	GH01I158358	158358359	158360954	0.2	[{'connected_gene': 'SPTA1', 'score': 13.68}, {'connected_gene': 'OR10T2', 'score': 11.05}, {'connected_gene': 'CD1B', 'score': 10.67}, {'connected_gene': 'CD1C', 'score': 10.36}, {'connected_gene': 'OR10R2', 'score': 10.06}, {'connected_gene': 'CD1E', 'score': 0.44}]
chr1	GH01I158251	158251157	158251687	0.4	[{'connected_gene': 'LINC01704', 'score': 5.44}, {'connected_gene': 'CD1A', 'score': 0.77}, {'connected_gene': 'GC01P158261', 'score': 0.44}, {'connected_gene': 'GC01P158260', 'score': 0.44}]
chr1	GH01I157991	157991414	158023607	2.66	[{'connected_gene': 'KIRREL1', 'score': 563.87}, {'connected_gene': 'LOC246784', 'score': 15.81}, {'connected_gene': 'CD1E', 'score': 11.24}, {'connected_gene': 'OR10T2', 'score': 3.31}, {'connected_gene': 'KIRREL1-IT1', 'score': 0.37}]
chr1	GH01I157652	157652801	157653600	0.77	[{'connected_gene': 'RRNAD1', 'score': 53.96}, {'connected_gene': 'PRCC', 'score': 18.96}, {'connected_gene': 'LOC246784', 'score': 11.72}, {'connected_gene': 'FCRL3', 'score': 9.88}, {'connected_gene': 'LRRC71', 'score': 9.75}, {'connected_gene': 'CD1E', 'score': 9.7}, {'connected_gene': 'MIR765', 'score': 4.66}, {'connected_gene': 'LOC105371457', 'score': 0.44}, {'connected_gene': 'ENSG00000233712', 'score': 0.39}]
chr1	GH01I158425	158425793	158426670	0.2	[{'connected_gene': 'OR10K2', 'score': 550.77}, {'connected_gene': 'CD1E', 'score': 10.68}, {'connected_gene': 'OR10T2', 'score': 10.59}, {'connected_gene': 'CD1B', 'score': 7.35}]
chr1	GH01I158394	158394640	158395021	0.38	[{'connected_gene': 'ACKR1', 'score': 4.49}, {'connected_gene': 'OR10T2', 'score': 0.77}, {'connected_gene': 'CD1E', 'score': 0.26}]
chr1	GH01I157963	157963731	157963880	0.69	[{'connected_gene': 'LOC246784', 'score': 12.22}, {'connected_gene': 'KIRREL1', 'score': 11.85}, {'connected_gene': 'CD1E', 'score': 10.11}, {'connected_gene': 'LOC105371459', 'score': 0.37}, {'connected_gene': 'LOC105371458', 'score': 0.28}]
chr1	GH01I158400	158400866	158401183	0.47	[{'connected_gene': 'OR10T2', 'score': 552.49}, {'connected_gene': 'CD1E', 'score': 15.76}, {'connected_gene': 'CD1B', 'score': 4.43}, {'connected_gene': 'OR10K1', 'score': 1.67}, {'connected_gene': 'OR6K3', 'score': 1.49}, {'connected_gene': 'OR6N1', 'score': 1.47}, {'connected_gene': 'OR10K2', 'score': 0.31}]
chr1	GH01I158370	158370974	158371596	0.54	[{'connected_gene': 'OR10T2', 'score': 11.22}, {'connected_gene': 'CD1E', 'score': 6.51}]
chr1	GH01I158369	158369759	158370940	0.38	[{'connected_gene': 'OR10T2', 'score': 11.22}, {'connected_gene': 'CD1E', 'score': 0.37}]
chr1	GH01I158368	158368296	158369458	0.2	[{'connected_gene': 'OR10T2', 'score': 11.2}, {'connected_gene': 'CD1E', 'score': 0.37}]
chr1	GH01I158399	158399378	158399437	0.7	[{'connected_gene': 'OR10T2', 'score': 550.77}, {'connected_gene': 'CD1E', 'score': 0.25}]
chr1	GH01I158366	158366393	158367242	0.2	[{'connected_gene': 'OR10T2', 'score': 11.2}, {'connected_gene': 'OR10K2', 'score': 9.92}, {'connected_gene': 'OR10X1', 'score': 9.48}, {'connected_gene': 'CD1E', 'score': 0.39}]
chr1	GH01I158493	158493046	158493397	0.26	[{'connected_gene': 'ENSG00000236656', 'score': 550.77}, {'connected_gene': 'CD1E', 'score': 15.21}, {'connected_gene': 'SPTA1', 'score': 7.05}, {'connected_gene': 'OR6N1', 'score': 5.51}, {'connected_gene': 'CD1B', 'score': 4.28}, {'connected_gene': 'OR10T2', 'score': 2.63}, {'connected_gene': 'OR10R3P', 'score': 0.77}]
chr1	GH01I158252	158252123	158252646	0.2	[{'connected_gene': 'GC01P158261', 'score': 0.77}, {'connected_gene': 'CD1A', 'score': 0.77}, {'connected_gene': 'GC01P158260', 'score': 0.77}]
chr1	GH01I158257	158257103	158258882	0.38	[{'connected_gene': 'GC01P158261', 'score': 550.77}, {'connected_gene': 'GC01P158260', 'score': 550.77}, {'connected_gene': 'CD1C', 'score': 11.44}, {'connected_gene': 'CD1A', 'score': 0.44}, {'connected_gene': 'HMGN1P5', 'score': 0.44}]
chr1	GH01I158283	158283201	158293035	2.02	[{'connected_gene': 'GC01P158286', 'score': 550.77}, {'connected_gene': 'CD1C', 'score': 550.77}, {'connected_gene': 'CD1B', 'score': 10.07}, {'connected_gene': 'CD1E', 'score': 5.25}, {'connected_gene': 'GC01P158293', 'score': 0.77}, {'connected_gene': 'GC01P158292', 'score': 0.77}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000434258	[[158323253, 158323316], [158324166, 158324463], [158325089, 158325359], [158325616, 158326490]]	[[158323264, 158323316], [158324166, 158324463], [158325089, 158325359], [158325616, 158326020]]
ENST00000444681	[[158323485, 158323836], [158325089, 158325359], [158325616, 158325895], [158326287, 158326381], [158326517, 158327343]]	[[158323778, 158323836], [158325089, 158325359], [158325616, 158325895], [158326287, 158326381], [158326517, 158326686]]
ENST00000368167	[[158323539, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325895], [158326287, 158326381], [158326517, 158326738]]	[[158323778, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325895], [158326287, 158326381], [158326517, 158326686]]
ENST00000452291	[[158323633, 158323836], [158325616, 158325895], [158326287, 158326381], [158326517, 158326686]]	[[158323778, 158323836], [158325616, 158325895], [158326287, 158326381], [158326517, 158326686]]
ENST00000368165	[[158323672, 158323836], [158324166, 158324463], [158325616, 158325895], [158326287, 158326381], [158326517, 158326686]]	[[158323778, 158323836], [158324166, 158324463], [158325616, 158325895], [158326287, 158326381], [158326517, 158326686]]
ENST00000368166	[[158323674, 158323836], [158325616, 158325895], [158326287, 158326381], [158326553, 158327289]]	[[158323778, 158323836], [158325616, 158325895], [158326287, 158326381], [158326553, 158326686]]
ENST00000368163	[[158323699, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325730], [158326287, 158326381], [158326553, 158327319]]	[[158323778, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325730], [158326287, 158326381], [158326553, 158326686]]
ENST00000368164	[[158323705, 158323836], [158325616, 158325791], [158326287, 158326381], [158326517, 158326986]]	[[158323778, 158323836], [158325616, 158325791], [158326287, 158326360]]
ENST00000368154	[[158323778, 158323836], [158325616, 158325730], [158326287, 158326381], [158326517, 158326686]]	[[158323778, 158323836], [158325616, 158325730], [158326287, 158326381], [158326517, 158326686]]
ENST00000368156	[[158323778, 158323836], [158324166, 158324463], [158325616, 158325895], [158326287, 158326381], [158326553, 158326686]]	[[158323778, 158323836], [158324166, 158324463], [158325616, 158325895], [158326287, 158326381], [158326553, 158326686]]
ENST00000368155	[[158323778, 158323836], [158324166, 158324463], [158325616, 158325730], [158326287, 158326381], [158326553, 158326686]]	[[158323778, 158323836], [158324166, 158324463], [158325616, 158325730], [158326287, 158326381], [158326553, 158326686]]
ENST00000368157	[[158323778, 158323836], [158325616, 158325730], [158326287, 158326381], [158326553, 158326686]]	[[158323778, 158323836], [158325616, 158325730], [158326287, 158326381], [158326553, 158326686]]
ENST00000368160	[[158323778, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325895], [158326287, 158326381], [158326553, 158327282]]	[[158323778, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325895], [158326287, 158326381], [158326553, 158326686]]
ENST00000368161	[[158323778, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325791], [158326287, 158326381], [158326517, 158327312]]	[[158323778, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325791], [158326287, 158326360]]
ENST00000464822	[[158323969, 158324055], [158325089, 158325128]]	None
ENST00000368162	[[158325683, 158325791], [158326287, 158326381], [158326553, 158327287]]	[[158325683, 158325791], [158326287, 158326360]]
NM_001185110	[[158323485, 158323836], [158325616, 158325730], [158326287, 158326381], [158326553, 158327343]]	[[158323778, 158323836], [158325616, 158325730], [158326287, 158326381], [158326553, 158326686]]
NM_001185113	[[158323485, 158323836], [158325616, 158325730], [158326287, 158326381], [158326517, 158327343]]	[[158323778, 158323836], [158325616, 158325730], [158326287, 158326381], [158326517, 158326686]]
NM_001042587	[[158323485, 158323836], [158325616, 158325791], [158326287, 158326381], [158326517, 158327343]]	[[158323778, 158323836], [158325616, 158325791], [158326287, 158326360]]
NM_001042586	[[158323485, 158323836], [158325616, 158325895], [158326287, 158326381], [158326553, 158327343]]	[[158323778, 158323836], [158325616, 158325895], [158326287, 158326381], [158326553, 158326686]]
NM_001185112	[[158323485, 158323836], [158325616, 158325895], [158326287, 158326381], [158326517, 158327343]]	[[158323778, 158323836], [158325616, 158325895], [158326287, 158326381], [158326517, 158326686]]
NM_001185114	[[158323485, 158323836], [158325089, 158325359], [158325616, 158325895], [158326287, 158326381], [158326517, 158327343]]	[[158323778, 158323836], [158325089, 158325359], [158325616, 158325895], [158326287, 158326381], [158326517, 158326686]]
NM_001185108	[[158323485, 158323836], [158324166, 158324463], [158325616, 158325730], [158326287, 158326381], [158326553, 158327343]]	[[158323778, 158323836], [158324166, 158324463], [158325616, 158325730], [158326287, 158326381], [158326553, 158326686]]
NM_001185115	[[158323485, 158323836], [158324166, 158324463], [158325616, 158325895], [158326287, 158326381], [158326553, 158327343]]	[[158323778, 158323836], [158324166, 158324463], [158325616, 158325895], [158326287, 158326381], [158326553, 158326686]]
NM_001185107	[[158323485, 158323836], [158324166, 158324463], [158325616, 158325895], [158326287, 158326381], [158326517, 158327343]]	[[158323778, 158323836], [158324166, 158324463], [158325616, 158325895], [158326287, 158326381], [158326517, 158326686]]
NM_001042585	[[158323485, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325730], [158326287, 158326381], [158326553, 158327343]]	[[158323778, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325730], [158326287, 158326381], [158326553, 158326686]]
NM_001042584	[[158323485, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325791], [158326287, 158326381], [158326517, 158327343]]	[[158323778, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325791], [158326287, 158326360]]
NM_001042583	[[158323485, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325895], [158326287, 158326381], [158326553, 158327343]]	[[158323778, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325895], [158326287, 158326381], [158326553, 158326686]]
NM_030893	[[158323485, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325895], [158326287, 158326381], [158326517, 158327343]]	[[158323778, 158323836], [158324166, 158324463], [158325089, 158325359], [158325616, 158325895], [158326287, 158326381], [158326517, 158326686]]