PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NM_033315	[[34058678, 34058897], [34062056, 34062419], [34067427, 34067552], [34068053, 34070540]]	[[34062203, 34062419], [34067427, 34067552], [34068053, 34068324]]

Promoter

Chrom	Start	End	Description
chr17	34058639	34058724	CAGE_peak_1_at_RASL10B_5end
chr17	34058727	34058736	CAGE_peak_2_at_RASL10B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I035731	35731329	35732468	1.87	[{'connected_gene': 'RASL10B', 'score': 550.77}, {'connected_gene': 'GC17P035735', 'score': 550.77}, {'connected_gene': 'PIR33765', 'score': 550.77}, {'connected_gene': 'GC17P035734', 'score': 550.77}, {'connected_gene': 'TAF15', 'score': 0.37}]
chr17	GH17I035777	35777260	35779305	0.8	[{'connected_gene': 'TAF15', 'score': 11.51}, {'connected_gene': 'RASL10B', 'score': 10.81}, {'connected_gene': 'GC17P035762', 'score': 0.37}, {'connected_gene': 'MMP28', 'score': 0.37}]
chr17	GH17I035772	35772943	35774601	0.69	[{'connected_gene': 'MMP28', 'score': 12.44}, {'connected_gene': 'GAS2L2', 'score': 11.7}, {'connected_gene': 'TAF15', 'score': 11.25}, {'connected_gene': 'RASL10B', 'score': 10.2}, {'connected_gene': 'GC17P035762', 'score': 0.39}]
chr17	GH17I035725	35725265	35727707	1	[{'connected_gene': 'AP2B1', 'score': 18.16}, {'connected_gene': 'ZNF830', 'score': 13.68}, {'connected_gene': 'C17orf50', 'score': 11.32}, {'connected_gene': 'MMP28', 'score': 10.85}, {'connected_gene': 'LIG3', 'score': 9.84}, {'connected_gene': 'GAS2L2', 'score': 5.63}, {'connected_gene': 'RASL10B', 'score': 0.44}, {'connected_gene': 'RPL17P42', 'score': 0.44}, {'connected_gene': 'TAF15', 'score': 0.39}]
chr17	GH17I035586	35586512	35591945	2.33	[{'connected_gene': 'AP2B1', 'score': 577.97}, {'connected_gene': 'PEX12', 'score': 12.4}, {'connected_gene': 'LIG3', 'score': 11.39}, {'connected_gene': 'LINC02001', 'score': 10.77}, {'connected_gene': 'RASL10B', 'score': 10.3}, {'connected_gene': 'C17orf50', 'score': 9.93}, {'connected_gene': 'SLFN12L', 'score': 9.8}, {'connected_gene': 'LOC100420062', 'score': 5.68}, {'connected_gene': 'GAS2L2', 'score': 5.41}, {'connected_gene': 'GC17M035597', 'score': 0.44}]
chr17	GH17I035617	35617055	35617711	0.46	[{'connected_gene': 'AP2B1', 'score': 16.67}, {'connected_gene': 'C17orf50', 'score': 10.72}, {'connected_gene': 'RASL10B', 'score': 10.69}, {'connected_gene': 'TAF15', 'score': 10.62}, {'connected_gene': 'MMP28', 'score': 9.81}, {'connected_gene': 'GC17M035631', 'score': 0.37}, {'connected_gene': 'LOC100420062', 'score': 0.34}]
chr17	GH17I035683	35683787	35685278	0.43	[{'connected_gene': 'AP2B1', 'score': 18.73}, {'connected_gene': 'C17orf50', 'score': 11.05}, {'connected_gene': 'TAF15', 'score': 10.99}, {'connected_gene': 'RASL10B', 'score': 10.9}, {'connected_gene': 'LOC100420062', 'score': 5.45}, {'connected_gene': 'PIR37925', 'score': 0.26}]
chr17	GH17I035529	35529366	35532940	0.93	[{'connected_gene': 'SLFN5', 'score': 16.63}, {'connected_gene': 'AP2B1', 'score': 11.1}, {'connected_gene': 'SLFN13', 'score': 10.93}, {'connected_gene': 'NLE1', 'score': 9.8}, {'connected_gene': 'SLFN12L', 'score': 5.4}, {'connected_gene': 'RASL10B', 'score': 5.14}, {'connected_gene': 'SLFN12', 'score': 4.93}, {'connected_gene': 'CCL5', 'score': 4.74}, {'connected_gene': 'SLFN11', 'score': 4.43}, {'connected_gene': 'RFFL', 'score': 1.84}, {'connected_gene': 'GC17P035523', 'score': 0.44}]
chr17	GH17I035613	35613062	35613191	0.56	[{'connected_gene': 'C17orf50', 'score': 11.18}, {'connected_gene': 'TAF15', 'score': 10.71}, {'connected_gene': 'RASL10B', 'score': 10.65}, {'connected_gene': 'PEX12', 'score': 10.6}, {'connected_gene': 'MMP28', 'score': 10.18}, {'connected_gene': 'LOC100420062', 'score': 0.37}, {'connected_gene': 'GC17M035631', 'score': 0.34}, {'connected_gene': 'AP2B1', 'score': 0.28}]
chr17	GH17I035783	35783027	35789942	1.24	[{'connected_gene': 'C17orf50', 'score': 23.64}, {'connected_gene': 'GAS2L2', 'score': 11.69}, {'connected_gene': 'TAF15', 'score': 11.4}, {'connected_gene': 'RASL10B', 'score': 10.79}, {'connected_gene': 'MMP28', 'score': 9.16}, {'connected_gene': 'RDM1', 'score': 5.48}, {'connected_gene': 'HEATR9', 'score': 4.85}, {'connected_gene': 'GC17P035762', 'score': 0.34}]
chr17	GH17I035666	35666524	35667867	0.67	[{'connected_gene': 'C17orf50', 'score': 10.6}, {'connected_gene': 'AP2B1', 'score': 10.57}, {'connected_gene': 'RASL10B', 'score': 10.37}, {'connected_gene': 'GAS2L2', 'score': 5.48}, {'connected_gene': 'PIR37925', 'score': 0.31}, {'connected_gene': 'TAF15', 'score': 0.25}]
chr17	GH17I035596	35596642	35596771	0.46	[{'connected_gene': 'LOC100420062', 'score': 550.77}, {'connected_gene': 'GC17M035597', 'score': 550.77}, {'connected_gene': 'RASL10B', 'score': 10.2}, {'connected_gene': 'MMP28', 'score': 9.98}, {'connected_gene': 'SLFN12L', 'score': 9.71}, {'connected_gene': 'AP2B1', 'score': 0.37}, {'connected_gene': 'PEX12', 'score': 0.37}]
chr17	GH17I035597	35596966	35598238	0.46	[{'connected_gene': 'LOC100420062', 'score': 556.06}, {'connected_gene': 'GC17M035597', 'score': 550.77}, {'connected_gene': 'AP2B1', 'score': 18.92}, {'connected_gene': 'RASL10B', 'score': 10.2}, {'connected_gene': 'MMP28', 'score': 9.98}, {'connected_gene': 'SLFN12L', 'score': 9.71}, {'connected_gene': 'GAS2L2', 'score': 5.41}, {'connected_gene': 'GC17M035631', 'score': 0.28}]
chr17	GH17I035741	35741222	35741351	0.64	[{'connected_gene': 'GC17P035742', 'score': 550.77}, {'connected_gene': 'MMP28', 'score': 11.16}, {'connected_gene': 'TAF15', 'score': 11.04}, {'connected_gene': 'NLE1', 'score': 9.43}, {'connected_gene': 'RASL10B', 'score': 0.44}, {'connected_gene': 'GC17P035735', 'score': 0.44}, {'connected_gene': 'PIR33765', 'score': 0.44}, {'connected_gene': 'GC17P035734', 'score': 0.44}]
chr17	GH17I035849	35849577	35849746	0.65	[{'connected_gene': 'PIR47475', 'score': 550.77}, {'connected_gene': 'CCL5', 'score': 11.31}, {'connected_gene': 'TAF15', 'score': 11.06}, {'connected_gene': 'C17orf50', 'score': 10.22}, {'connected_gene': 'RASL10B', 'score': 9.6}, {'connected_gene': 'GC17M035815', 'score': 0.37}]
chr17	GH17I035941	35941902	35943676	0.8	[{'connected_gene': 'GC17M036103', 'score': 550.77}, {'connected_gene': 'LYZL6', 'score': 550.77}, {'connected_gene': 'CCL5', 'score': 11.01}, {'connected_gene': 'CCL18', 'score': 10.14}, {'connected_gene': 'RDM1', 'score': 8.64}, {'connected_gene': 'C17orf50', 'score': 7.85}, {'connected_gene': 'RASL10B', 'score': 5.6}, {'connected_gene': 'MMP28', 'score': 4.69}]
chr17	GH17I035559	35559331	35561587	0.97	[{'connected_gene': 'ENSG00000267625', 'score': 550.77}, {'connected_gene': 'SLFN14', 'score': 550.77}, {'connected_gene': 'RASL10B', 'score': 20.73}, {'connected_gene': 'SLFN12L', 'score': 11.26}, {'connected_gene': 'TAF15', 'score': 10.31}, {'connected_gene': 'AP2B1', 'score': 5.73}, {'connected_gene': 'LOC100420062', 'score': 5.51}, {'connected_gene': 'GAS2L2', 'score': 5.38}, {'connected_gene': 'GC17M035546', 'score': 0.44}]
chr17	GH17I035850	35850157	35850291	0.31	[{'connected_gene': 'PIR47475', 'score': 550.77}, {'connected_gene': 'C17orf50', 'score': 19.06}, {'connected_gene': 'CCL5', 'score': 11.31}, {'connected_gene': 'TAF15', 'score': 11.06}, {'connected_gene': 'RASL10B', 'score': 9.6}, {'connected_gene': 'GC17M035815', 'score': 0.37}]
chr17	GH17I035508	35508700	35509720	0.43	[{'connected_gene': 'ENSG00000267074', 'score': 550.77}, {'connected_gene': 'SLFN12L', 'score': 11.42}, {'connected_gene': 'RASL10B', 'score': 5.82}, {'connected_gene': 'PIR52950', 'score': 0.44}, {'connected_gene': 'GC17P035503', 'score': 0.44}]