PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000446828	[[185000740, 185000815], [185003304, 185003431], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185200537]]	[[185003393, 185003431], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185200244]]
ENST00000447637	[[185000748, 185000815], [185003304, 185003431], [185146284, 185146708]]	[[185146369, 185146708]]
ENST00000424227	[[185000764, 185000815], [185003312, 185003431], [185146284, 185146844], [185155234, 185155418], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185200244]]	[[185146369, 185146844], [185155234, 185155418], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185200244]]
ENST00000428617	[[185046675, 185046750], [185146284, 185146782]]	[[185146369, 185146782]]
ENST00000433092	[[185046682, 185046750], [185146284, 185146734], [185155234, 185155418], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169322]]	[[185146369, 185146734], [185155234, 185155256]]
ENST00000443863	[[185046682, 185046750], [185046861, 185047037], [185155234, 185155418], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185200599]]	[[185046994, 185047037], [185155234, 185155418], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185200244]]
ENST00000535426	[[185046994, 185047037], [185155234, 185155418], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185200599]]	[[185046994, 185047037], [185155234, 185155418], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185200244]]
ENST00000265026	[[185080907, 185081156], [185146284, 185146844], [185155234, 185155418], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185206885]]	[[185146369, 185146844], [185155234, 185155418], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185200244]]
ENST00000448876	[[185000728, 185000815], [185003304, 185003431], [185009400, 185010867]]	[[185003393, 185003431], [185009400, 185009485]]
ENST00000455188	[[185000748, 185000815], [185003304, 185003431], [185009400, 185009548], [185046411, 185047051]]	[[185003393, 185003431], [185009400, 185009485]]
ENST00000454237	[[185000813, 185000907], [185003304, 185003431], [185009400, 185009705]]	[[185003393, 185003431], [185009400, 185009485]]
ENST00000438798	[[185003180, 185003431], [185009400, 185009537]]	[[185003393, 185003431], [185009400, 185009485]]
ENST00000438053	[[185081029, 185081156], [185146284, 185146844], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185200389]]	[[185146369, 185146844], [185165576, 185165584]]
ENST00000439882	[[185146284, 185146844], [185161232, 185161424], [185165576, 185165735]]	[[185146369, 185146844], [185161232, 185161342]]
ENST00000477582	[[185155234, 185155418], [185161232, 185161495]]	None
ENST00000420577	[[185155332, 185155418], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651]]	[[185155332, 185155418], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651]]
NM_001242314	[[185000728, 185000815], [185003312, 185003431], [185146284, 185146844], [185155234, 185155418], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185206882]]	[[185146369, 185146844], [185155234, 185155418], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185200244]]
NM_001242317	[[185000728, 185000815], [185003304, 185003431], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185206882]]	[[185003393, 185003431], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185200244]]
NM_004721	[[185080835, 185081156], [185146284, 185146844], [185155234, 185155418], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185206882]]	[[185146369, 185146844], [185155234, 185155418], [185161232, 185161424], [185165576, 185165735], [185167687, 185167846], [185169074, 185169183], [185181337, 185181447], [185183534, 185183651], [185184613, 185184751], [185190762, 185191549], [185195113, 185195184], [185198019, 185198317], [185200142, 185200244]]
NR_038322	[[185000728, 185000815], [185003304, 185003431], [185009400, 185010867]]	None

Promoter

Chrom	Start	End	Description
chr3	185000735	185000796	CAGE_peak_1_at_MAP3K13_5end
chr3	185046677	185046694	CAGE_peak_3_at_MAP3K13_5end
chr3	185080917	185080987	CAGE_peak_2_at_MAP3K13_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I185361	185361666	185364712	1.89	[{'connected_gene': 'MAP3K13', 'score': 557.37}, {'connected_gene': 'TRA2B', 'score': 16.35}, {'connected_gene': 'RPL4P4', 'score': 0.22}]
chr3	GH03I185297	185297975	185300799	1	[{'connected_gene': 'MAP3K13', 'score': 23.93}, {'connected_gene': 'C3orf70', 'score': 9.6}, {'connected_gene': 'RPL4P4', 'score': 0.13}]
chr3	GH03I185335	185335595	185338867	1.26	[{'connected_gene': 'MAP3K13', 'score': 26.37}, {'connected_gene': 'VPS8', 'score': 10.84}, {'connected_gene': 'RPL4P4', 'score': 0.18}]
chr3	GH03I185341	185341951	185343498	0.74	[{'connected_gene': 'MAP3K13', 'score': 25.44}, {'connected_gene': 'VPS8', 'score': 16.76}, {'connected_gene': 'RPL4P4', 'score': 0.18}]
chr3	GH03I185325	185325649	185333278	1.63	[{'connected_gene': 'MAP3K13', 'score': 38.4}, {'connected_gene': 'EHHADH', 'score': 11.33}, {'connected_gene': 'RPL4P4', 'score': 0.17}]
chr3	GH03I185316	185316316	185318582	1.54	[{'connected_gene': 'MAP3K13', 'score': 38.96}, {'connected_gene': 'EHHADH', 'score': 11.91}, {'connected_gene': 'C3orf70', 'score': 9.96}, {'connected_gene': 'RPL4P4', 'score': 0.15}]
chr3	GH03I185351	185351216	185352089	0.59	[{'connected_gene': 'MAP3K13', 'score': 15.73}, {'connected_gene': 'EHHADH', 'score': 10.96}, {'connected_gene': 'C3orf70', 'score': 9.29}, {'connected_gene': 'RPL4P4', 'score': 0.2}]
chr3	GH03I185308	185308689	185310251	0.67	[{'connected_gene': 'MAP3K13', 'score': 38.74}, {'connected_gene': 'EHHADH', 'score': 11.7}, {'connected_gene': 'C3orf70', 'score': 9.4}, {'connected_gene': 'RPL4P4', 'score': 0.14}]
chr3	GH03I185282	185282191	185283904	1.99	[{'connected_gene': 'MAP3K13', 'score': 576.96}, {'connected_gene': 'EHHADH', 'score': 550.77}, {'connected_gene': 'C3orf70', 'score': 6.02}, {'connected_gene': 'RPL4P4', 'score': 0.12}]
chr3	GH03I185488	185488629	185490907	0.92	[{'connected_gene': 'TMEM41A', 'score': 0.44}, {'connected_gene': 'LOC101929018', 'score': 0.44}, {'connected_gene': 'MAP3K13', 'score': 0.08}]
chr3	GH03I185365	185365393	185365542	0.6	[{'connected_gene': 'RPL4P4', 'score': 0.23}, {'connected_gene': 'MAP3K13', 'score': 0.18}]
chr3	GH03I185418	185418601	185418800	0.82	[{'connected_gene': 'RPL4P4', 'score': 550.77}, {'connected_gene': 'MAP3K13', 'score': 0.12}]
chr3	GH03I185420	185420895	185421164	0.56	[{'connected_gene': 'RPL4P4', 'score': 0.77}, {'connected_gene': 'PIR32146', 'score': 0.22}, {'connected_gene': 'MAP3K13', 'score': 0.12}]
chr3	GH03I185411	185411173	185411322	0.2	[{'connected_gene': 'RPL4P4', 'score': 0.44}, {'connected_gene': 'MAP3K13', 'score': 0.13}]
chr3	GH03I185176	185176853	185177002	0.57	[{'connected_gene': 'C3orf70', 'score': 11.77}, {'connected_gene': 'MAP3K13', 'score': 10.95}, {'connected_gene': 'EHHADH-AS1', 'score': 0.39}, {'connected_gene': 'GC03M185246', 'score': 0.2}]
chr3	GH03I185250	185250067	185251600	0.77	[{'connected_gene': 'VPS8', 'score': 16.78}, {'connected_gene': 'MAP3K13', 'score': 8.56}, {'connected_gene': 'MIR5588', 'score': 0.77}, {'connected_gene': 'EIF2S2P2', 'score': 0.77}, {'connected_gene': 'EHHADH', 'score': 0.29}]
chr3	GH03I185207	185207454	185208482	0.77	[{'connected_gene': 'VPS8', 'score': 15.09}, {'connected_gene': 'C3orf70', 'score': 10.79}, {'connected_gene': 'MAP3K13', 'score': 8.52}, {'connected_gene': 'GC03M185246', 'score': 0.28}, {'connected_gene': 'EHHADH-AS1', 'score': 0.25}, {'connected_gene': 'EHHADH', 'score': 0.19}]
chr3	GH03I185422	185422668	185424159	0.97	[{'connected_gene': 'EPHB3', 'score': 6.28}, {'connected_gene': 'RPL4P4', 'score': 0.77}, {'connected_gene': 'PIR32146', 'score': 0.22}, {'connected_gene': 'MAP3K13', 'score': 0.11}]
chr3	GH03I185309	185308213	185308382	0.62	[{'connected_gene': 'EHHADH', 'score': 11.7}, {'connected_gene': 'MAP3K13', 'score': 11.7}, {'connected_gene': 'C3orf70', 'score': 9.4}, {'connected_gene': 'RPL4P4', 'score': 0.14}]
chr3	GH03I185319	185319136	185320144	0.2	[{'connected_gene': 'EHHADH', 'score': 11.9}, {'connected_gene': 'MAP3K13', 'score': 11.9}, {'connected_gene': 'C3orf70', 'score': 9.96}, {'connected_gene': 'RPL4P4', 'score': 0.15}]
chr3	GH03I184443	184443094	184444122	0.65	[{'connected_gene': 'LINC02054', 'score': 11.36}, {'connected_gene': 'FAM131A', 'score': 11.17}, {'connected_gene': 'EIF4G1', 'score': 11.15}, {'connected_gene': 'LINC01840', 'score': 10.34}, {'connected_gene': 'MAP3K13', 'score': 5.47}, {'connected_gene': 'CHRD', 'score': 4.31}, {'connected_gene': 'LOC105374252', 'score': 0.25}]
chr3	GH03I185253	185253273	185254662	1.97	[{'connected_gene': 'MIR5588', 'score': 550.77}, {'connected_gene': 'EHHADH', 'score': 550.31}, {'connected_gene': 'VPS8', 'score': 16.77}, {'connected_gene': 'MAP3K13', 'score': 7.13}]
chr3	GH03I185354	185354213	185354442	0.72	[{'connected_gene': 'ENSG00000272970', 'score': 17.69}, {'connected_gene': 'MAP3K13', 'score': 16.76}, {'connected_gene': 'THPO', 'score': 14.39}, {'connected_gene': 'MAGEF1', 'score': 14.27}, {'connected_gene': 'EHHADH', 'score': 10.95}, {'connected_gene': 'C3orf70', 'score': 9.29}, {'connected_gene': 'RPL4P4', 'score': 0.21}]
chr3	GH03I185473	185473080	185474242	0.85	[{'connected_gene': 'PIR32146', 'score': 0.44}, {'connected_gene': 'RPL4P4', 'score': 0.23}, {'connected_gene': 'MAP3K13', 'score': 0.08}]
chr3	GH03I185456	185456201	185456600	0.31	[{'connected_gene': 'PIR32146', 'score': 0.34}, {'connected_gene': 'RPL4P4', 'score': 0.28}, {'connected_gene': 'MAP3K13', 'score': 0.09}]
chr3	GH03I185496	185496120	185499809	2.29	[{'connected_gene': 'GC03P185502', 'score': 550.77}, {'connected_gene': 'LOC105374254', 'score': 550.77}, {'connected_gene': 'TMEM41A', 'score': 550.77}, {'connected_gene': 'TRA2B', 'score': 17.07}, {'connected_gene': 'MAP3K13', 'score': 4.88}, {'connected_gene': 'LOC101929018', 'score': 0.37}]