PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000347785	[[60869866, 60870087], [60882527, 60882566], [60885646, 60885952], [60886386, 60886449], [60886705, 60887047], [60889082, 60889376], [60890378, 60890504], [60891355, 60891409], [60892503, 60892623], [60893222, 60893313], [60893759, 60895324]]	[[60870032, 60870087], [60882527, 60882566], [60885646, 60885952], [60886386, 60886449], [60886705, 60887047], [60889082, 60889376], [60890378, 60890504], [60891355, 60891409], [60892503, 60892623], [60893222, 60893311]]
ENST00000544014	[[60869980, 60870087], [60882527, 60882566], [60885646, 60885952], [60886386, 60886449], [60886799, 60886831]]	[[60870032, 60870087], [60882527, 60882566], [60885646, 60885952], [60886386, 60886449], [60886799, 60886831]]
NM_001346456	[[60861434, 60861788], [60882527, 60882566], [60885646, 60885952], [60886386, 60886449], [60886705, 60887047], [60889082, 60889376], [60890378, 60890504], [60891355, 60891409], [60892503, 60892623], [60893222, 60893313], [60893759, 60895324]]	[[60885723, 60885952], [60886386, 60886449], [60886705, 60887047], [60889082, 60889376], [60890378, 60890504], [60891355, 60891409], [60892503, 60892623], [60893222, 60893311]]
NM_014207	[[60869929, 60870087], [60882527, 60882566], [60885646, 60885952], [60886386, 60886449], [60886705, 60887047], [60889082, 60889376], [60890378, 60890504], [60891355, 60891409], [60892503, 60892623], [60893222, 60893313], [60893759, 60895324]]	[[60870032, 60870087], [60882527, 60882566], [60885646, 60885952], [60886386, 60886449], [60886705, 60887047], [60889082, 60889376], [60890378, 60890504], [60891355, 60891409], [60892503, 60892623], [60893222, 60893311]]

Promoter

Chrom	Start	End	Description
chr11	60869937	60869979	CAGE_peak_1_at_CD5_5end
chr11	60869980	60869987	CAGE_peak_2_at_CD5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I060970	60970601	60975095	1.72	[{'connected_gene': 'CD6', 'score': 570.28}, {'connected_gene': 'CD5', 'score': 22.13}, {'connected_gene': 'SLC15A3', 'score': 11.97}, {'connected_gene': 'TMEM132A', 'score': 11.87}, {'connected_gene': 'VPS37C', 'score': 10.96}, {'connected_gene': 'CCDC86', 'score': 5.41}, {'connected_gene': 'FTH1', 'score': 4.22}, {'connected_gene': 'SDHAF2', 'score': 1.17}, {'connected_gene': 'RNU6-933P', 'score': 0.39}]
chr11	GH11I061040	61040969	61043954	1.39	[{'connected_gene': 'CD6', 'score': 33.6}, {'connected_gene': 'CD5', 'score': 15.97}, {'connected_gene': 'SLC15A3', 'score': 11.17}, {'connected_gene': 'TMEM132A', 'score': 11.13}, {'connected_gene': 'SDHAF2', 'score': 1.3}, {'connected_gene': 'ENSG00000256733', 'score': 0.39}, {'connected_gene': 'LOC105369326', 'score': 0.29}, {'connected_gene': 'LOC105369325', 'score': 0.25}]
chr11	GH11I061020	61020515	61024269	1.36	[{'connected_gene': 'CD6', 'score': 23.38}, {'connected_gene': 'CD5', 'score': 15.1}, {'connected_gene': 'PPP1R32', 'score': 4.95}, {'connected_gene': 'SDHAF2', 'score': 1.24}, {'connected_gene': 'LOC105369326', 'score': 0.39}, {'connected_gene': 'ENSG00000256733', 'score': 0.29}]
chr11	GH11I061110	61110215	61112253	1.14	[{'connected_gene': 'CD6', 'score': 22.61}, {'connected_gene': 'CD5', 'score': 16.53}, {'connected_gene': 'RNU6-933P', 'score': 11.45}, {'connected_gene': 'VPS37C', 'score': 11.22}, {'connected_gene': 'SDHAF2', 'score': 1.53}, {'connected_gene': 'SLC15A3', 'score': 1.51}, {'connected_gene': 'GC11P061103', 'score': 0.44}, {'connected_gene': 'GC11P061102', 'score': 0.44}, {'connected_gene': 'GC11P061126', 'score': 0.37}, {'connected_gene': 'GC11M061097', 'score': 0.26}]
chr11	GH11I061114	61114462	61115383	0.31	[{'connected_gene': 'CD6', 'score': 11.23}, {'connected_gene': 'CD5', 'score': 4.97}, {'connected_gene': 'GC11P061126', 'score': 0.39}, {'connected_gene': 'GC11P061102', 'score': 0.39}, {'connected_gene': 'GC11P061103', 'score': 0.39}, {'connected_gene': 'GC11M061097', 'score': 0.26}]
chr11	GH11I061173	61173569	61173718	0.74	[{'connected_gene': 'CD6', 'score': 10.97}, {'connected_gene': 'SLC15A3', 'score': 10.83}, {'connected_gene': 'TMEM132A', 'score': 10.82}, {'connected_gene': 'CD5', 'score': 10.68}, {'connected_gene': 'TKFC', 'score': 9.54}, {'connected_gene': 'DDB1', 'score': 9.54}, {'connected_gene': 'GC11P061168', 'score': 0.44}, {'connected_gene': 'PGA3', 'score': 0.31}]
chr11	GH11I061174	61174289	61174478	0.69	[{'connected_gene': 'CD6', 'score': 10.97}, {'connected_gene': 'SLC15A3', 'score': 10.83}, {'connected_gene': 'TMEM132A', 'score': 10.82}, {'connected_gene': 'CD5', 'score': 10.68}, {'connected_gene': 'TKFC', 'score': 9.54}, {'connected_gene': 'DDB1', 'score': 9.54}, {'connected_gene': 'GC11P061168', 'score': 0.44}, {'connected_gene': 'PGA3', 'score': 0.31}]
chr11	GH11I061116	61116034	61117577	0.69	[{'connected_gene': 'CD6', 'score': 12.09}, {'connected_gene': 'RNU6-933P', 'score': 11.54}, {'connected_gene': 'VPS37C', 'score': 10.99}, {'connected_gene': 'GC11P061126', 'score': 0.44}, {'connected_gene': 'GC11P061103', 'score': 0.39}, {'connected_gene': 'CD5', 'score': 0.39}, {'connected_gene': 'GC11P061102', 'score': 0.39}, {'connected_gene': 'GC11M061097', 'score': 0.28}]
chr11	GH11I061148	61148162	61154510	1.55	[{'connected_gene': 'CD5', 'score': 36.21}, {'connected_gene': 'CD6', 'score': 11.22}, {'connected_gene': 'GC11M061097', 'score': 0.77}, {'connected_gene': 'PIR36654', 'score': 0.44}, {'connected_gene': 'GC11M061146', 'score': 0.44}, {'connected_gene': 'VPS37C', 'score': 0.39}]
chr11	GH11I061075	61075781	61076803	0.82	[{'connected_gene': 'CD5', 'score': 11.69}, {'connected_gene': 'CD6', 'score': 11.2}, {'connected_gene': 'SLC15A3', 'score': 4.77}, {'connected_gene': 'TMEM138', 'score': 2.11}, {'connected_gene': 'LOC105369325', 'score': 0.37}, {'connected_gene': 'ENSG00000256733', 'score': 0.34}]
chr11	GH11I061101	61101690	61105409	1.85	[{'connected_gene': 'CD5', 'score': 593.39}, {'connected_gene': 'GC11P061103', 'score': 550.77}, {'connected_gene': 'GC11P061102', 'score': 550.77}, {'connected_gene': 'CD6', 'score': 34.89}, {'connected_gene': 'RNU6-933P', 'score': 11.29}, {'connected_gene': 'VPS37C', 'score': 4.91}, {'connected_gene': 'SDHAF2', 'score': 1.92}, {'connected_gene': 'GC11P061126', 'score': 0.34}, {'connected_gene': 'GC11M061097', 'score': 0.23}]
chr11	GH11I061119	61119280	61121847	1.28	[{'connected_gene': 'CD5', 'score': 43.33}, {'connected_gene': 'CD6', 'score': 26.33}, {'connected_gene': 'RNU6-933P', 'score': 11.54}, {'connected_gene': 'VPS37C', 'score': 10.99}, {'connected_gene': 'FADS1', 'score': 5.49}, {'connected_gene': 'GC11P061126', 'score': 0.44}, {'connected_gene': 'GC11P061103', 'score': 0.37}, {'connected_gene': 'GC11P061102', 'score': 0.37}, {'connected_gene': 'GC11M061097', 'score': 0.29}]
chr11	GH11I061112	61112617	61113522	0.2	[{'connected_gene': 'CD5', 'score': 31.38}, {'connected_gene': 'CD6', 'score': 11.5}, {'connected_gene': 'RNU6-933P', 'score': 11.45}, {'connected_gene': 'VPS37C', 'score': 11.04}, {'connected_gene': 'GC11P061103', 'score': 0.39}, {'connected_gene': 'GC11P061126', 'score': 0.39}, {'connected_gene': 'GC11P061102', 'score': 0.39}, {'connected_gene': 'GC11M061097', 'score': 0.26}]
chr11	GH11I061128	61128925	61133076	1.44	[{'connected_gene': 'CD5', 'score': 33.06}, {'connected_gene': 'CD6', 'score': 11.56}, {'connected_gene': 'RNU6-933P', 'score': 11.33}, {'connected_gene': 'GC11P061126', 'score': 0.77}, {'connected_gene': 'ENSG00000279549', 'score': 0.39}, {'connected_gene': 'GC11M061097', 'score': 0.34}, {'connected_gene': 'VPS37C', 'score': 0.29}]
chr11	GH11I061171	61171565	61173085	0.89	[{'connected_gene': 'CD5', 'score': 25.0}, {'connected_gene': 'CD6', 'score': 10.97}, {'connected_gene': 'RNU6-933P', 'score': 10.92}, {'connected_gene': 'SLC15A3', 'score': 10.83}, {'connected_gene': 'TMEM132A', 'score': 10.82}, {'connected_gene': 'TKFC', 'score': 9.87}, {'connected_gene': 'DDB1', 'score': 9.87}, {'connected_gene': 'GC11P061168', 'score': 0.44}, {'connected_gene': 'PGA3', 'score': 0.29}]
chr11	GH11I061070	61070085	61073692	1.27	[{'connected_gene': 'CD5', 'score': 15.89}, {'connected_gene': 'CD6', 'score': 10.93}, {'connected_gene': 'ENSG00000256733', 'score': 0.37}, {'connected_gene': 'LOC105369325', 'score': 0.34}]
chr11	GH11I061079	61079288	61084398	0.74	[{'connected_gene': 'CD5', 'score': 11.99}, {'connected_gene': 'VPS37C', 'score': 11.39}, {'connected_gene': 'CD6', 'score': 10.89}, {'connected_gene': 'LOC105369325', 'score': 0.39}, {'connected_gene': 'ENSG00000256733', 'score': 0.31}]
chr11	GH11I061106	61106000	61109593	0.49	[{'connected_gene': 'CD5', 'score': 30.91}, {'connected_gene': 'VPS37C', 'score': 15.71}, {'connected_gene': 'RNU6-933P', 'score': 11.29}, {'connected_gene': 'CD6', 'score': 11.03}, {'connected_gene': 'GC11P061103', 'score': 0.44}, {'connected_gene': 'GC11P061102', 'score': 0.44}, {'connected_gene': 'GC11P061126', 'score': 0.37}, {'connected_gene': 'GC11M061097', 'score': 0.25}]
chr11	GH11I061140	61140513	61142306	0.92	[{'connected_gene': 'CD5', 'score': 20.71}, {'connected_gene': 'VPS37C', 'score': 12.39}, {'connected_gene': 'RNU6-933P', 'score': 11.39}, {'connected_gene': 'ENSG00000279549', 'score': 0.77}, {'connected_gene': 'GC11P061126', 'score': 0.39}, {'connected_gene': 'GC11M061097', 'score': 0.39}]
chr11	GH11I061077	61077714	61078350	0.2	[{'connected_gene': 'CD5', 'score': 11.85}, {'connected_gene': 'RNU6-933P', 'score': 10.94}, {'connected_gene': 'CD6', 'score': 10.86}, {'connected_gene': 'LOC105369325', 'score': 0.39}, {'connected_gene': 'ENSG00000256733', 'score': 0.34}]
chr11	GH11I061123	61123657	61125181	0.59	[{'connected_gene': 'CD5', 'score': 35.41}, {'connected_gene': 'GC11P061126', 'score': 0.77}, {'connected_gene': 'GC11P061102', 'score': 0.34}, {'connected_gene': 'GC11P061103', 'score': 0.34}, {'connected_gene': 'GC11M061097', 'score': 0.29}]
chr11	GH11I060909	60909359	60918120	2.74	[{'connected_gene': 'TMEM109', 'score': 555.54}, {'connected_gene': 'GC11M060911', 'score': 550.77}, {'connected_gene': 'LOC105369323', 'score': 550.77}, {'connected_gene': 'CD6', 'score': 12.23}, {'connected_gene': 'CD5', 'score': 10.42}, {'connected_gene': 'PRPF19', 'score': 9.11}, {'connected_gene': 'PTGDR2', 'score': 8.31}, {'connected_gene': 'SLC15A3', 'score': 5.32}, {'connected_gene': 'CYB561A3', 'score': 2.5}, {'connected_gene': 'VPS37C', 'score': 2.14}, {'connected_gene': 'ENSG00000257052', 'score': 0.44}, {'connected_gene': 'PIR49215', 'score': 0.44}, {'connected_gene': 'GC11P060908', 'score': 0.44}]
chr11	GH11I061193	61193204	61194700	0.31	[{'connected_gene': 'PGA3', 'score': 13.44}, {'connected_gene': 'CD5', 'score': 11.03}, {'connected_gene': 'CD6', 'score': 10.86}, {'connected_gene': 'TKFC', 'score': 10.25}, {'connected_gene': 'DDB1', 'score': 10.24}, {'connected_gene': 'GC11P061168', 'score': 0.31}]
chr11	GH11I061133	61133378	61134638	0.38	[{'connected_gene': 'VPS37C', 'score': 12.35}, {'connected_gene': 'CD6', 'score': 11.6}, {'connected_gene': 'CD5', 'score': 11.42}, {'connected_gene': 'RNU6-933P', 'score': 11.33}, {'connected_gene': 'MS4A18', 'score': 9.24}, {'connected_gene': 'GC11P061126', 'score': 0.44}, {'connected_gene': 'ENSG00000279549', 'score': 0.39}, {'connected_gene': 'GC11M061097', 'score': 0.34}]
chr11	GH11I061064	61064981	61067511	0.68	[{'connected_gene': 'VPS37C', 'score': 11.63}, {'connected_gene': 'CD5', 'score': 11.58}, {'connected_gene': 'CD6', 'score': 11.54}, {'connected_gene': 'SLC15A3', 'score': 11.43}, {'connected_gene': 'TMEM132A', 'score': 11.41}, {'connected_gene': 'RNU6-933P', 'score': 11.23}, {'connected_gene': 'ENSG00000256733', 'score': 0.39}, {'connected_gene': 'LOC105369325', 'score': 0.31}]
chr11	GH11I061157	61157672	61165841	2.57	[{'connected_gene': 'VPS37C', 'score': 553.61}, {'connected_gene': 'CD5', 'score': 31.95}, {'connected_gene': 'CD6', 'score': 11.21}, {'connected_gene': 'SLC15A3', 'score': 9.43}, {'connected_gene': 'CYB561A3', 'score': 4.54}, {'connected_gene': 'SDHAF2', 'score': 2.69}, {'connected_gene': 'CPSF7', 'score': 2.66}, {'connected_gene': 'PTGDR2', 'score': 1.44}, {'connected_gene': 'GC11P061168', 'score': 0.44}]
chr11	GH11I060980	60980670	60985328	0.54	[{'connected_gene': 'SLC15A3', 'score': 11.92}, {'connected_gene': 'TMEM132A', 'score': 11.85}, {'connected_gene': 'CD5', 'score': 11.21}, {'connected_gene': 'VPS37C', 'score': 10.97}, {'connected_gene': 'CD6', 'score': 6.04}, {'connected_gene': 'FTH1', 'score': 5.12}, {'connected_gene': 'RNU6-933P', 'score': 0.77}]
chr11	GH11I060975	60975601	60975800	0.4	[{'connected_gene': 'SLC15A3', 'score': 11.97}, {'connected_gene': 'TMEM132A', 'score': 11.86}, {'connected_gene': 'CD5', 'score': 11.21}, {'connected_gene': 'VPS37C', 'score': 10.96}, {'connected_gene': 'CD6', 'score': 0.77}, {'connected_gene': 'RNU6-933P', 'score': 0.44}]
chr11	GH11I060976	60976865	60980370	0.8	[{'connected_gene': 'SLC15A3', 'score': 11.94}, {'connected_gene': 'TMEM132A', 'score': 11.86}, {'connected_gene': 'CD5', 'score': 11.2}, {'connected_gene': 'VPS37C', 'score': 10.96}, {'connected_gene': 'FTH1', 'score': 5.1}, {'connected_gene': 'PTGDR2', 'score': 4.93}, {'connected_gene': 'CD6', 'score': 4.81}, {'connected_gene': 'RNU6-933P', 'score': 0.44}]
chr11	GH11I060985	60985341	60988202	1.15	[{'connected_gene': 'RNU6-933P', 'score': 550.77}, {'connected_gene': 'CD6', 'score': 30.06}, {'connected_gene': 'CD5', 'score': 22.75}, {'connected_gene': 'FTH1', 'score': 4.17}, {'connected_gene': 'SDHAF2', 'score': 2.44}, {'connected_gene': 'TRA-TGC10-1', 'score': 0.44}]
chr11	GH11I061090	61090816	61093650	1.35	[{'connected_gene': 'LOC105369325', 'score': 550.77}, {'connected_gene': 'CD5', 'score': 13.88}, {'connected_gene': 'VPS37C', 'score': 11.11}, {'connected_gene': 'RNU6-933P', 'score': 10.52}, {'connected_gene': 'CPSF7', 'score': 1.18}, {'connected_gene': 'ENSG00000256733', 'score': 0.28}]
chr11	GH11I061146	61146422	61147781	0.71	[{'connected_gene': 'PIR36654', 'score': 550.77}, {'connected_gene': 'ENSG00000279549', 'score': 550.77}, {'connected_gene': 'GC11M061146', 'score': 550.77}, {'connected_gene': 'CD5', 'score': 35.16}, {'connected_gene': 'CD6', 'score': 10.96}, {'connected_gene': 'SDHAF2', 'score': 4.17}, {'connected_gene': 'GC11M061097', 'score': 0.44}, {'connected_gene': 'VPS37C', 'score': 0.39}]
chr11	GH11I061145	61145132	61146103	0.49	[{'connected_gene': 'PIR36654', 'score': 550.77}, {'connected_gene': 'ENSG00000279549', 'score': 550.77}, {'connected_gene': 'GC11M061146', 'score': 550.77}, {'connected_gene': 'CD5', 'score': 35.13}, {'connected_gene': 'GC11M061097', 'score': 0.44}, {'connected_gene': 'VPS37C', 'score': 0.37}]
chr11	GH11I061167	61167147	61168218	1.42	[{'connected_gene': 'GC11P061168', 'score': 550.77}, {'connected_gene': 'CD5', 'score': 19.53}, {'connected_gene': 'SLC15A3', 'score': 5.66}, {'connected_gene': 'CYB561A3', 'score': 5.47}, {'connected_gene': 'CPSF7', 'score': 4.82}, {'connected_gene': 'SDHAF2', 'score': 4.08}, {'connected_gene': 'VPS37C', 'score': 4.03}, {'connected_gene': 'TMEM138', 'score': 1.3}, {'connected_gene': 'PGA3', 'score': 0.28}]
chr11	GH11I061127	61127079	61127839	0.31	[{'connected_gene': 'GC11P061126', 'score': 550.77}, {'connected_gene': 'ENSG00000279549', 'score': 0.37}, {'connected_gene': 'CD5', 'score': 0.31}, {'connected_gene': 'GC11M061097', 'score': 0.31}]
chr11	GH11I061125	61125409	61125558	0.79	[{'connected_gene': 'GC11P061126', 'score': 550.77}, {'connected_gene': 'GC11P061102', 'score': 0.34}, {'connected_gene': 'GC11P061103', 'score': 0.34}, {'connected_gene': 'CD5', 'score': 0.34}, {'connected_gene': 'GC11M061097', 'score': 0.29}]