PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000332904	[[85954409, 85954571], [85955249, 85955345], [85956260, 85956406], [85957541, 85957592], [85958787, 85958877], [85960356, 85960443], [85961562, 85961676], [85962735, 85962879], [85964282, 85964361], [85965582, 85965683], [85967929, 85968133], [85968484, 85968637], [85970756, 85970921], [85971403, 85971471], [85971934, 85972163], [85972846, 85973104], [85978834, 85979377]]	[[85954516, 85954571], [85955249, 85955345], [85956260, 85956406], [85957541, 85957592], [85958787, 85958877], [85960356, 85960443], [85961562, 85961676], [85962735, 85962879], [85964282, 85964361], [85965582, 85965683], [85967929, 85968133], [85968484, 85968637], [85970756, 85970921], [85971403, 85971471], [85971934, 85972163], [85972846, 85973104], [85978834, 85979032]]
ENST00000372117	[[85954413, 85954571], [85955249, 85955345], [85956260, 85956406], [85957541, 85957592], [85958787, 85958877], [85960356, 85960443], [85961562, 85961676], [85962735, 85962879], [85964282, 85964361], [85965582, 85965683], [85967929, 85968133], [85968484, 85968637], [85970756, 85970921], [85971403, 85971471], [85971934, 85972163], [85972846, 85973104], [85973837, 85977122]]	[[85954516, 85954571], [85955249, 85955345], [85956260, 85956406], [85957541, 85957592], [85958787, 85958877], [85960356, 85960443], [85961562, 85961676], [85962735, 85962879], [85964282, 85964361], [85965582, 85965683], [85967929, 85968133], [85968484, 85968637], [85970756, 85970921], [85971403, 85971471], [85971934, 85972163], [85972846, 85973104], [85973837, 85974377]]
ENST00000440770	[[85961657, 85961676], [85962735, 85962879], [85964282, 85964361], [85965582, 85965683], [85967929, 85968133], [85968484, 85968637], [85971403, 85971471], [85971934, 85972163], [85972846, 85973104], [85973837, 85977119]]	[[85962819, 85962879], [85964282, 85964361], [85965582, 85965683], [85967929, 85968133], [85968484, 85968637], [85971403, 85971471], [85971934, 85972163], [85972846, 85973104], [85973837, 85974377]]
ENST00000459673	[[85972632, 85973104], [85973837, 85977122]]	None
NM_033100	[[85954390, 85954571], [85955249, 85955345], [85956260, 85956406], [85957541, 85957592], [85958787, 85958877], [85960356, 85960443], [85961562, 85961676], [85962735, 85962879], [85964282, 85964361], [85965582, 85965683], [85967929, 85968133], [85968484, 85968637], [85970756, 85970921], [85971403, 85971471], [85971934, 85972163], [85972846, 85973104], [85973837, 85978452]]	[[85954516, 85954571], [85955249, 85955345], [85956260, 85956406], [85957541, 85957592], [85958787, 85958877], [85960356, 85960443], [85961562, 85961676], [85962735, 85962879], [85964282, 85964361], [85965582, 85965683], [85967929, 85968133], [85968484, 85968637], [85970756, 85970921], [85971403, 85971471], [85971934, 85972163], [85972846, 85973104], [85973837, 85974377]]
NM_001171971	[[85954390, 85954571], [85955249, 85955345], [85956260, 85956406], [85957541, 85957592], [85958787, 85958877], [85960356, 85960443], [85961562, 85961676], [85962735, 85962879], [85964282, 85964361], [85965582, 85965683], [85967929, 85968133], [85968484, 85968637], [85970756, 85970921], [85971403, 85971471], [85971934, 85972163], [85972846, 85973104], [85978834, 85979377]]	[[85954516, 85954571], [85955249, 85955345], [85956260, 85956406], [85957541, 85957592], [85958787, 85958877], [85960356, 85960443], [85961562, 85961676], [85962735, 85962879], [85964282, 85964361], [85965582, 85965683], [85967929, 85968133], [85968484, 85968637], [85970756, 85970921], [85971403, 85971471], [85971934, 85972163], [85972846, 85973104], [85978834, 85979032]]

Promoter

Chrom	Start	End	Description
chr10	85954269	85954280	CAGE_peak_4_at_CDHR1_5end
chr10	85954282	85954314	CAGE_peak_1_at_CDHR1_5end
chr10	85954317	85954331	CAGE_peak_3_at_CDHR1_5end
chr10	85954337	85954346	CAGE_peak_6_at_CDHR1_5end
chr10	85954377	85954438	CAGE_peak_2_at_CDHR1_5end
chr10	85954449	85954467	CAGE_peak_5_at_CDHR1_5end
chr10	85954494	85954501	CAGE_peak_9_at_CDHR1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I084196	84196467	84199418	0.62	[{'connected_gene': 'CDHR1', 'score': 17.15}, {'connected_gene': 'LRIT2', 'score': 15.17}, {'connected_gene': 'GHITM', 'score': 11.22}, {'connected_gene': 'PIR57101', 'score': 0.39}, {'connected_gene': 'GC10P084182', 'score': 0.37}]
chr10	GH10I084161	84161085	84161234	0.31	[{'connected_gene': 'CDHR1', 'score': 11.84}, {'connected_gene': 'LRIT2', 'score': 10.58}, {'connected_gene': 'LRIT1', 'score': 10.54}, {'connected_gene': 'CERNA2', 'score': 0.39}, {'connected_gene': 'ENSG00000271933', 'score': 0.34}]
chr10	GH10I084163	84163386	84164452	0.31	[{'connected_gene': 'CDHR1', 'score': 11.84}, {'connected_gene': 'LRIT2', 'score': 10.58}, {'connected_gene': 'LRIT1', 'score': 10.54}, {'connected_gene': 'CERNA2', 'score': 0.44}, {'connected_gene': 'ENSG00000271933', 'score': 0.34}]
chr10	GH10I084159	84159019	84159639	0.2	[{'connected_gene': 'CDHR1', 'score': 12.19}, {'connected_gene': 'LRIT2', 'score': 11.13}, {'connected_gene': 'LRIT1', 'score': 10.54}, {'connected_gene': 'RNU1-65P', 'score': 9.53}, {'connected_gene': 'C10orf99', 'score': 7.83}, {'connected_gene': 'CERNA2', 'score': 0.39}, {'connected_gene': 'ENSG00000271933', 'score': 0.37}]
chr10	GH10I084156	84156644	84157411	0.96	[{'connected_gene': 'CDHR1', 'score': 12.19}, {'connected_gene': 'LRIT2', 'score': 11.13}, {'connected_gene': 'RNU1-65P', 'score': 9.54}, {'connected_gene': 'ENSG00000271933', 'score': 5.32}, {'connected_gene': 'C10orf99', 'score': 5.01}, {'connected_gene': 'CERNA2', 'score': 0.37}]
chr10	GH10I084148	84148125	84148254	0.43	[{'connected_gene': 'CDHR1', 'score': 12.39}, {'connected_gene': 'ENSG00000271933', 'score': 5.49}, {'connected_gene': 'GHITM', 'score': 0.44}, {'connected_gene': 'CERNA2', 'score': 0.34}]
chr10	GH10I084135	84135325	84136786	0.52	[{'connected_gene': 'CDHR1', 'score': 10.74}, {'connected_gene': 'ENSG00000271933', 'score': 5.82}, {'connected_gene': 'GHITM', 'score': 0.77}, {'connected_gene': 'GC10M084047', 'score': 0.34}]
chr10	GH10I084075	84075159	84078707	0.74	[{'connected_gene': 'CDHR1', 'score': 10.54}, {'connected_gene': 'RNU1-65P', 'score': 10.45}, {'connected_gene': 'HMGN2P8', 'score': 0.77}, {'connected_gene': 'GC10M084047', 'score': 0.29}, {'connected_gene': 'LOC105378399', 'score': 0.19}]
chr10	GH10I084195	84194616	84194675	1.09	[{'connected_gene': 'CDHR1', 'score': 550.77}, {'connected_gene': 'PIR57101', 'score': 0.39}, {'connected_gene': 'GC10P084182', 'score': 0.39}]
chr10	GH10I084194	84194445	84194614	1.35	[{'connected_gene': 'CDHR1', 'score': 562.88}, {'connected_gene': 'GC10P084182', 'score': 0.39}]
chr10	GH10I084267	84267601	84268000	0.79	[{'connected_gene': 'CCSER2', 'score': 17.46}, {'connected_gene': 'LINC00858', 'score': 6.43}, {'connected_gene': 'CDHR1', 'score': 5.47}, {'connected_gene': 'GC10P084248', 'score': 0.37}, {'connected_gene': 'GC10P084249', 'score': 0.37}, {'connected_gene': 'GC10M084258', 'score': 0.31}]
chr10	GH10I084171	84171378	84174149	1.4	[{'connected_gene': 'C10orf99', 'score': 550.77}, {'connected_gene': 'CERNA2', 'score': 550.77}, {'connected_gene': 'CDHR1', 'score': 8.63}, {'connected_gene': 'LRIT2', 'score': 7.15}]
chr10	GH10I084176	84176042	84180044	1.46	[{'connected_gene': 'LRIT2', 'score': 11.16}, {'connected_gene': 'CDHR1', 'score': 10.71}, {'connected_gene': 'CCSER2', 'score': 2.53}, {'connected_gene': 'C10orf99', 'score': 0.77}, {'connected_gene': 'GC10P084182', 'score': 0.77}]
chr10	GH10I084265	84265565	84265714	0.2	[{'connected_gene': 'LRIT2', 'score': 11.84}, {'connected_gene': 'CDHR1', 'score': 10.92}, {'connected_gene': 'LINC00858', 'score': 0.39}, {'connected_gene': 'GC10P084248', 'score': 0.37}, {'connected_gene': 'GC10P084249', 'score': 0.37}, {'connected_gene': 'GC10M084258', 'score': 0.29}]
chr10	GH10I084264	84264685	84264874	0.81	[{'connected_gene': 'LRIT2', 'score': 11.86}, {'connected_gene': 'CDHR1', 'score': 10.92}, {'connected_gene': 'GC10P084248', 'score': 0.37}, {'connected_gene': 'GC10P084249', 'score': 0.37}, {'connected_gene': 'LINC00858', 'score': 0.37}, {'connected_gene': 'GC10M084258', 'score': 0.29}]
chr10	GH10I084257	84257165	84257314	0.77	[{'connected_gene': 'LRIT2', 'score': 12.62}, {'connected_gene': 'CDHR1', 'score': 10.11}, {'connected_gene': 'RNU1-65P', 'score': 9.26}, {'connected_gene': 'GC10P084248', 'score': 0.44}, {'connected_gene': 'GC10P084249', 'score': 0.44}, {'connected_gene': 'RGR', 'score': 0.34}, {'connected_gene': 'LINC00858', 'score': 0.34}]
chr10	GH10I084200	84200783	84201880	0.91	[{'connected_gene': 'LRIT2', 'score': 15.55}, {'connected_gene': 'GHITM', 'score': 11.21}, {'connected_gene': 'CDHR1', 'score': 0.44}, {'connected_gene': 'PIR57101', 'score': 0.44}, {'connected_gene': 'GC10P084182', 'score': 0.37}]
chr10	GH10I084191	84191265	84191354	0.2	[{'connected_gene': 'LRIT2', 'score': 11.22}, {'connected_gene': 'GHITM', 'score': 11.07}, {'connected_gene': 'CDHR1', 'score': 0.77}, {'connected_gene': 'GC10P084182', 'score': 0.44}]
chr10	GH10I084188	84188481	84189108	0.2	[{'connected_gene': 'LRIT2', 'score': 11.2}, {'connected_gene': 'GHITM', 'score': 11.09}, {'connected_gene': 'CDHR1', 'score': 0.44}, {'connected_gene': 'GC10P084182', 'score': 0.44}]
chr10	GH10I084202	84202846	84203154	0.2	[{'connected_gene': 'LRIT2', 'score': 16.39}, {'connected_gene': 'LRIT1', 'score': 11.52}, {'connected_gene': 'GHITM', 'score': 11.3}, {'connected_gene': 'PIR57101', 'score': 0.77}, {'connected_gene': 'CDHR1', 'score': 0.44}]
chr10	GH10I084137	84137290	84141512	2.1	[{'connected_gene': 'GHITM', 'score': 566.96}, {'connected_gene': 'ENSG00000271933', 'score': 555.87}, {'connected_gene': 'RPS3AP5', 'score': 12.05}, {'connected_gene': 'CDHR1', 'score': 10.5}, {'connected_gene': 'C10orf99', 'score': 4.47}, {'connected_gene': 'GC10M084047', 'score': 0.31}]
chr10	GH10I084214	84214685	84214814	0.56	[{'connected_gene': 'LRIT1', 'score': 22.38}, {'connected_gene': 'GHITM', 'score': 10.88}, {'connected_gene': 'CDHR1', 'score': 6.11}, {'connected_gene': 'PIR57101', 'score': 0.44}, {'connected_gene': 'LRIT2', 'score': 0.39}]
chr10	GH10I084205	84205705	84205854	0.67	[{'connected_gene': 'LRIT1', 'score': 11.52}, {'connected_gene': 'GHITM', 'score': 11.29}, {'connected_gene': 'PIR57101', 'score': 0.77}, {'connected_gene': 'CDHR1', 'score': 0.39}]
chr10	GH10I084230	84230396	84230674	0.34	[{'connected_gene': 'PIR46157', 'score': 550.77}, {'connected_gene': 'PIR34083', 'score': 550.77}, {'connected_gene': 'RGR', 'score': 64.32}, {'connected_gene': 'LRIT2', 'score': 12.01}, {'connected_gene': 'LRIT1', 'score': 2.52}, {'connected_gene': 'CDHR1', 'score': 1.68}]
chr10	GH10I084295	84295715	84297730	0.69	[{'connected_gene': 'GC10M084258', 'score': 550.77}, {'connected_gene': 'CCSER2', 'score': 12.12}, {'connected_gene': 'LRIT2', 'score': 10.76}, {'connected_gene': 'CDHR1', 'score': 5.42}, {'connected_gene': 'RGR', 'score': 4.87}, {'connected_gene': 'LINC00858', 'score': 0.37}]
chr10	GH10I084186	84186433	84188476	0.73	[{'connected_gene': 'ENSG00000271933', 'score': 27.29}, {'connected_gene': 'RPS3AP5', 'score': 21.8}, {'connected_gene': 'CDHR1', 'score': 21.44}, {'connected_gene': 'LRIT2', 'score': 11.2}, {'connected_gene': 'GHITM', 'score': 11.09}, {'connected_gene': 'GC10P084182', 'score': 0.44}]