PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000558721	[[59887073, 59887113], [59888492, 59888553], [59901933, 59902067], [59904100, 59904180], [59908890, 59909080], [59910377, 59910421]]	None
ENST00000560874	[[59887927, 59888112], [59888441, 59888553], [59901933, 59902067], [59904100, 59904180], [59908890, 59908938]]	None
ENST00000560580	[[59891841, 59891910], [59901933, 59902067], [59904100, 59904180], [59907246, 59907407], [59908890, 59909008]]	None
ENST00000560111	[[59891851, 59891910], [59901933, 59902067], [59903590, 59903875]]	None
ENST00000559189	[[59891875, 59891910], [59901933, 59902067], [59904100, 59904180], [59908890, 59909080], [59910377, 59910699]]	[[59910437, 59910699]]
ENST00000560585	[[59903982, 59904180], [59908748, 59909080], [59910377, 59912207]]	[[59910437, 59911754]]
ENST00000396065	[[59903982, 59904180], [59908890, 59909080], [59910377, 59913023]]	[[59910437, 59911754]]
ENST00000559626	[[59908632, 59909080], [59910377, 59910597]]	[[59910437, 59910597]]
ENST00000560210	[[59908729, 59909080], [59932288, 59932438]]	None
ENST00000559200	[[59910137, 59910285], [59910377, 59910896]]	[[59910437, 59910896]]
NM_004751	[[59903981, 59904180], [59908890, 59909080], [59910377, 59912210]]	[[59910437, 59911754]]

Promoter

Chrom	Start	End	Description
chr15	59903975	59903992	CAGE_peak_1_at_GCNT3_5end
chr15	59903999	59904006	CAGE_peak_13_at_GCNT3_5end
chr15	59904021	59904030	CAGE_peak_8_at_GCNT3_5end
chr15	59904033	59904043	CAGE_peak_14_at_GCNT3_5end
chr15	59904045	59904065	CAGE_peak_3_at_GCNT3_5end
chr15	59904077	59904099	CAGE_peak_2_at_GCNT3_5end
chr15	59904110	59904119	CAGE_peak_11_at_GCNT3_5end
chr15	59908653	59908680	CAGE_peak_4_at_GCNT3_5end
chr15	59908698	59908705	CAGE_peak_22_at_GCNT3_5end
chr15	59908719	59908730	CAGE_peak_6_at_GCNT3_5end
chr15	59908741	59908754	CAGE_peak_12_at_GCNT3_5end
chr15	59908762	59908770	CAGE_peak_18_at_GCNT3_5end
chr15	59908801	59908817	CAGE_peak_10_at_GCNT3_5end
chr15	59908820	59908829	CAGE_peak_20_at_GCNT3_5end
chr15	59908840	59908861	CAGE_peak_7_at_GCNT3_5end
chr15	59908870	59908880	CAGE_peak_21_at_GCNT3_5end
chr15	59908915	59908930	CAGE_peak_5_at_GCNT3_5end
chr15	59908955	59908965	CAGE_peak_16_at_GCNT3_5end
chr15	59909013	59909022	CAGE_peak_19_at_GCNT3_5end
chr15	59910132	59910144	CAGE_peak_9_at_GCNT3_5end
chr15	59910171	59910184	CAGE_peak_15_at_GCNT3_5end
chr15	59910206	59910219	CAGE_peak_17_at_GCNT3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I059553	59553738	59557199	1.57	[{'connected_gene': 'GCNT3', 'score': 2.39}, {'connected_gene': 'RPL21P117', 'score': 0.77}, {'connected_gene': 'GC15M059576', 'score': 0.37}, {'connected_gene': 'RNA5SP396', 'score': 0.37}]
chr15	GH15I059611	59611209	59613406	1.68	[{'connected_gene': 'GCNT3', 'score': 550.37}, {'connected_gene': 'GTF2A2', 'score': 20.23}, {'connected_gene': 'GC15M059584', 'score': 0.37}, {'connected_gene': 'GC15P059642', 'score': 0.31}]
chr15	GH15I059586	59586937	59588218	0.77	[{'connected_gene': 'ICE2', 'score': 39.0}, {'connected_gene': 'SLTM', 'score': 23.72}, {'connected_gene': 'MINDY2', 'score': 21.06}, {'connected_gene': 'RPS3AP6', 'score': 20.16}, {'connected_gene': 'GC15M059584', 'score': 0.44}, {'connected_gene': 'GCNT3', 'score': 0.44}, {'connected_gene': 'GC15M059575', 'score': 0.39}]
chr15	GH15I059270	59270779	59287092	1.62	[{'connected_gene': 'MYO1E', 'score': 15.98}, {'connected_gene': 'FAM81A', 'score': 10.85}, {'connected_gene': 'MIR2116', 'score': 10.12}, {'connected_gene': 'ENSG00000259250', 'score': 4.93}, {'connected_gene': 'GCNT3', 'score': 1.21}, {'connected_gene': 'GC15M059271', 'score': 0.44}, {'connected_gene': 'ENSG00000259771', 'score': 0.44}, {'connected_gene': 'GC15M059344', 'score': 0.21}]
chr15	GH15I059614	59614519	59616901	1.09	[{'connected_gene': 'GTF2A2', 'score': 10.45}, {'connected_gene': 'GC15M059584', 'score': 0.37}, {'connected_gene': 'GCNT3', 'score': 0.34}, {'connected_gene': 'GC15P059642', 'score': 0.31}]
chr15	GH15I059609	59609524	59610268	0.38	[{'connected_gene': 'GC15M059584', 'score': 0.39}, {'connected_gene': 'GCNT3', 'score': 0.37}, {'connected_gene': 'GC15P059642', 'score': 0.29}]
chr15	GH15I059622	59622402	59622551	0.74	[{'connected_gene': 'GC15P059642', 'score': 0.37}, {'connected_gene': 'GC15M059584', 'score': 0.31}, {'connected_gene': 'GCNT3', 'score': 0.31}]
chr15	GH15I059593	59593807	59597052	1.19	[{'connected_gene': 'GC15M059584', 'score': 550.77}, {'connected_gene': 'GCNT3', 'score': 550.77}]
chr15	GH15I059582	59582642	59583541	0.2	[{'connected_gene': 'GC15M059575', 'score': 0.44}, {'connected_gene': 'GCNT3', 'score': 0.39}]
chr15	GH15I059590	59590994	59591931	0.58	[{'connected_gene': 'GC15M059584', 'score': 0.77}, {'connected_gene': 'GCNT3', 'score': 0.77}, {'connected_gene': 'GC15M059575', 'score': 0.37}]