PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000307144	[[59499041, 59500705]]	[[59499139, 59500285]]
NM_033195	[[59499014, 59500787]]	[[59499139, 59500285]]

Promoter

Chrom	Start	End	Description
chr15	59499031	59499054	CAGE_peak_2_at_LDHAL6B_5end
chr15	59499057	59499080	CAGE_peak_1_at_LDHAL6B_5end
chr15	59499103	59499112	CAGE_peak_3_at_LDHAL6B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I059199	59199162	59201371	1.26	[{'connected_gene': 'LDHAL6B', 'score': 32.08}, {'connected_gene': 'BNIP2', 'score': 4.29}, {'connected_gene': 'RNF111', 'score': 2.59}, {'connected_gene': 'ADAM10', 'score': 1.31}, {'connected_gene': 'MIR2116', 'score': 0.31}, {'connected_gene': 'GC15M059055', 'score': 0.26}, {'connected_gene': 'MYO1E', 'score': 0.09}]
chr15	GH15I059173	59173742	59178901	1.42	[{'connected_gene': 'LDHAL6B', 'score': 32.45}, {'connected_gene': 'FAM81A', 'score': 10.38}, {'connected_gene': 'MYO1E', 'score': 9.9}, {'connected_gene': 'RNF111', 'score': 3.39}, {'connected_gene': 'ADAM10', 'score': 1.81}, {'connected_gene': 'MIR2116', 'score': 0.44}, {'connected_gene': 'GC15M059055', 'score': 0.2}]
chr15	GH15I059185	59185939	59186290	0.37	[{'connected_gene': 'LDHAL6B', 'score': 12.76}, {'connected_gene': 'RNU4-80P', 'score': 11.35}, {'connected_gene': 'FAM81A', 'score': 10.21}, {'connected_gene': 'RNF111', 'score': 3.24}, {'connected_gene': 'ADAM10', 'score': 1.93}, {'connected_gene': 'SLTM', 'score': 1.16}, {'connected_gene': 'MIR2116', 'score': 0.39}, {'connected_gene': 'GC15M059055', 'score': 0.22}, {'connected_gene': 'MYO1E', 'score': 0.09}]
chr15	GH15I059180	59180649	59181401	0.6	[{'connected_gene': 'LDHAL6B', 'score': 30.27}, {'connected_gene': 'RNU4-80P', 'score': 11.71}, {'connected_gene': 'MIR2116', 'score': 0.44}, {'connected_gene': 'GC15M059055', 'score': 0.21}, {'connected_gene': 'MYO1E', 'score': 0.08}]
chr15	GH15I059190	59190422	59193275	1.02	[{'connected_gene': 'LDHAL6B', 'score': 22.11}, {'connected_gene': 'MIR2116', 'score': 11.03}, {'connected_gene': 'FAM81A', 'score': 10.91}, {'connected_gene': 'GC15M059055', 'score': 0.23}, {'connected_gene': 'MYO1E', 'score': 0.09}]
chr15	GH15I059164	59164749	59167565	1.04	[{'connected_gene': 'SLTM', 'score': 21.24}, {'connected_gene': 'LDHAL6B', 'score': 15.19}, {'connected_gene': 'RNF111', 'score': 12.97}, {'connected_gene': 'MYO1E', 'score': 9.73}, {'connected_gene': 'ENSG00000225798', 'score': 8.92}, {'connected_gene': 'MIR2116', 'score': 0.44}, {'connected_gene': 'ENSG00000259732', 'score': 0.25}, {'connected_gene': 'GC15M059055', 'score': 0.18}]
chr15	GH15I059168	59168168	59171967	1.42	[{'connected_gene': 'MIR2116', 'score': 550.77}, {'connected_gene': 'LDHAL6B', 'score': 15.74}, {'connected_gene': 'RNF111', 'score': 3.46}, {'connected_gene': 'ADAM10', 'score': 1.87}, {'connected_gene': 'SLTM', 'score': 1.14}, {'connected_gene': 'ENSG00000259732', 'score': 0.25}, {'connected_gene': 'GC15M059055', 'score': 0.19}, {'connected_gene': 'MYO1E', 'score': 0.08}]
chr15	GH15I059172	59172472	59172606	0.39	[{'connected_gene': 'MIR2116', 'score': 550.77}, {'connected_gene': 'RNF111', 'score': 1.83}, {'connected_gene': 'LDHAL6B', 'score': 0.29}, {'connected_gene': 'GC15M059055', 'score': 0.19}, {'connected_gene': 'MYO1E', 'score': 0.08}]
chr15	GH15I059206	59206821	59206880	0.68	[{'connected_gene': 'PIR59873', 'score': 550.77}, {'connected_gene': 'LDHAL6B', 'score': 550.77}, {'connected_gene': 'GC15M059055', 'score': 0.28}, {'connected_gene': 'MYO1E', 'score': 0.1}]
chr15	GH15I059243	59243889	59245564	1.16	[{'connected_gene': 'GC15M059055', 'score': 550.77}, {'connected_gene': 'RNU4-80P', 'score': 11.45}, {'connected_gene': 'LDHAL6B', 'score': 11.45}, {'connected_gene': 'MYO1E', 'score': 11.33}, {'connected_gene': 'MIR2116', 'score': 10.22}, {'connected_gene': 'ENSG00000259771', 'score': 0.31}]