PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000497048	[[110247132, 110248207], [110249308, 110249473], [110249575, 110250728]]	None
ENST00000493306	[[110247132, 110248207], [110249308, 110250548], [110251210, 110251331], [110251448, 110251718]]	None
ENST00000374672	[[110247132, 110248207], [110249308, 110249473], [110249575, 110250548], [110251210, 110251331], [110251448, 110251927]]	[[110248031, 110248207], [110249308, 110249473], [110249575, 110250548], [110251210, 110251331], [110251448, 110251453]]
ENST00000411706	[[110249949, 110250548], [110251210, 110251411]]	[[110249949, 110250548], [110251210, 110251309]]
ENST00000420475	[[110251269, 110251331], [110251448, 110251844], [110252399, 110252763]]	[[110251269, 110251331], [110251448, 110251453]]
NM_004235	[[110247132, 110248207], [110249308, 110249473], [110249575, 110250548], [110251210, 110251331], [110251448, 110252001]]	[[110248031, 110248207], [110249308, 110249473], [110249575, 110250548], [110251210, 110251331], [110251448, 110251453]]
NM_001314052	[[110247137, 110248207], [110249308, 110250548], [110251210, 110251331], [110251448, 110252001]]	[[110248031, 110248207], [110249308, 110250548], [110251210, 110251331], [110251448, 110251453]]

Promoter

Chrom	Start	End	Description
chr9	110250603	110250614	CAGE_peak_24_at_KLF4_5end
chr9	110250629	110250642	CAGE_peak_7_at_KLF4_5end
chr9	110250651	110250662	CAGE_peak_11_at_KLF4_5end
chr9	110250697	110250738	CAGE_peak_2_at_KLF4_5end
chr9	110251836	110251887	CAGE_peak_4_at_KLF4_5end
chr9	110252035	110252057	CAGE_peak_1_at_KLF4_5end
chr9	110252074	110252079	CAGE_peak_3_at_KLF4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I107210	107210379	107215193	1.33	[{'connected_gene': 'KLF4', 'score': 6.43}, {'connected_gene': 'LOC644661', 'score': 0.26}, {'connected_gene': 'RAD23B', 'score': 0.19}]
chr9	GH09I107841	107841158	107841390	0.27	[{'connected_gene': 'KLF4', 'score': 3.35}, {'connected_gene': 'RPL36AP6', 'score': 0.44}, {'connected_gene': 'ENSG00000233727', 'score': 0.39}]
chr9	GH09I107547	107547696	107549531	1.4	[{'connected_gene': 'KLF4', 'score': 5.55}, {'connected_gene': 'PPIAP88', 'score': 0.77}, {'connected_gene': 'LOC105376205', 'score': 0.37}]
chr9	GH09I107673	107673520	107676525	1.29	[{'connected_gene': 'KLF4', 'score': 5.3}, {'connected_gene': 'GC09M107664', 'score': 0.39}, {'connected_gene': 'RNU6-996P', 'score': 0.39}, {'connected_gene': 'LOC105376207', 'score': 0.26}]
chr9	GH09I107483	107483675	107484053	0.31	[{'connected_gene': 'KLF4', 'score': 0.44}, {'connected_gene': 'RNU6-492P', 'score': 0.44}, {'connected_gene': 'GC09M107476', 'score': 0.44}]
chr9	GH09I107484	107484240	107484909	0.8	[{'connected_gene': 'KLF4', 'score': 0.44}, {'connected_gene': 'RNU6-492P', 'score': 0.44}, {'connected_gene': 'GC09M107476', 'score': 0.44}]
chr9	GH09I107480	107480127	107481400	1.17	[{'connected_gene': 'KLF4', 'score': 0.44}, {'connected_gene': 'RNU6-492P', 'score': 0.44}, {'connected_gene': 'GC09M107476', 'score': 0.44}]
chr9	GH09I107711	107710910	107713072	1.15	[{'connected_gene': 'KLF4', 'score': 1.21}, {'connected_gene': 'LOC105376207', 'score': 0.44}, {'connected_gene': 'GC09M107664', 'score': 0.25}, {'connected_gene': 'RNU6-996P', 'score': 0.25}]
chr9	GH09I107513	107513020	107513964	0.76	[{'connected_gene': 'KLF4', 'score': 9.39}, {'connected_gene': 'LOC105376206', 'score': 0.44}, {'connected_gene': 'ENSG00000236005', 'score': 0.34}]
chr9	GH09I107492	107492640	107492869	0.58	[{'connected_gene': 'KLF4', 'score': 0.77}, {'connected_gene': 'LOC105376206', 'score': 0.39}]
chr9	GH09I107568	107568720	107570049	0.74	[{'connected_gene': 'KLF4', 'score': 10.52}, {'connected_gene': 'LOC105376205', 'score': 0.77}, {'connected_gene': 'GC09M107664', 'score': 0.16}, {'connected_gene': 'RNU6-996P', 'score': 0.16}]
chr9	GH09I107932	107932178	107932336	0.64	[{'connected_gene': 'KLF4', 'score': 5.45}, {'connected_gene': 'LOC101926973', 'score': 0.44}, {'connected_gene': 'RNA5SP293', 'score': 0.39}]
chr9	GH09I107440	107440260	107440409	0.56	[{'connected_gene': 'KLF4', 'score': 11.29}, {'connected_gene': 'HMGN2P32', 'score': 0.37}, {'connected_gene': 'LINC01509', 'score': 0.31}, {'connected_gene': 'RAD23B', 'score': 0.1}]
chr9	GH09I107437	107437680	107439687	0.66	[{'connected_gene': 'KLF4', 'score': 11.29}, {'connected_gene': 'HMGN2P32', 'score': 0.37}, {'connected_gene': 'LINC01509', 'score': 0.31}, {'connected_gene': 'RAD23B', 'score': 0.1}]
chr9	GH09I107927	107927201	107928400	0.81	[{'connected_gene': 'KLF4', 'score': 2.36}, {'connected_gene': 'RNA5SP293', 'score': 0.44}, {'connected_gene': 'LOC101926973', 'score': 0.39}]
chr9	GH09I107989	107989001	107990128	1.1	[{'connected_gene': 'KLF4', 'score': 6.5}, {'connected_gene': 'RPS15AP27', 'score': 0.31}, {'connected_gene': 'LOC105376211', 'score': 0.28}, {'connected_gene': 'RPL31P43', 'score': 0.23}]
chr9	GH09I107485	107485253	107492635	2.58	[{'connected_gene': 'KLF4', 'score': 550.77}, {'connected_gene': 'LOC100128086', 'score': 5.38}, {'connected_gene': 'RNU6-492P', 'score': 0.39}, {'connected_gene': 'GC09M107476', 'score': 0.39}]
chr9	GH09I107170	107170884	107171096	0.34	[{'connected_gene': 'LOC644661', 'score': 550.77}, {'connected_gene': 'KLF4', 'score': 1.94}, {'connected_gene': 'GC09P107131', 'score': 0.28}]
chr9	GH09I107613	107613001	107616545	1.18	[{'connected_gene': 'RNU6-996P', 'score': 10.5}, {'connected_gene': 'KLF4', 'score': 5.51}, {'connected_gene': 'GC09M107664', 'score': 0.25}, {'connected_gene': 'LOC105376205', 'score': 0.25}]
chr9	GH09I107636	107636626	107640146	1.05	[{'connected_gene': 'RNU6-996P', 'score': 12.51}, {'connected_gene': 'KLF4', 'score': 11.23}, {'connected_gene': 'GC09M107664', 'score': 0.34}, {'connected_gene': 'LOC105376205', 'score': 0.19}]
chr9	GH09I107631	107631379	107633848	0.58	[{'connected_gene': 'RNU6-996P', 'score': 12.46}, {'connected_gene': 'KLF4', 'score': 11.23}, {'connected_gene': 'GC09M107664', 'score': 0.29}, {'connected_gene': 'LOC105376205', 'score': 0.2}]
chr9	GH09I107826	107826918	107828068	0.87	[{'connected_gene': 'RNU6-1064P', 'score': 11.82}, {'connected_gene': 'KLF4', 'score': 1.42}, {'connected_gene': 'RPL36AP6', 'score': 0.44}, {'connected_gene': 'RN7SL659P', 'score': 0.37}]
chr9	GH09I107754	107754473	107756621	1.51	[{'connected_gene': 'RNU6-1064P', 'score': 11.41}, {'connected_gene': 'KLF4', 'score': 8.75}, {'connected_gene': 'RN7SL659P', 'score': 6.71}, {'connected_gene': 'LOC105376207', 'score': 0.28}]
chr9	GH09I107748	107748111	107753234	1.68	[{'connected_gene': 'RNU6-1064P', 'score': 12.51}, {'connected_gene': 'KLF4', 'score': 6.78}, {'connected_gene': 'RN7SL659P', 'score': 6.32}, {'connected_gene': 'LOC105376207', 'score': 0.29}]
chr9	GH09I107949	107949026	107949394	0.93	[{'connected_gene': 'LOC105376211', 'score': 550.77}, {'connected_gene': 'KLF4', 'score': 5.43}, {'connected_gene': 'LOC101926973', 'score': 0.44}]
chr9	GH09I107503	107503896	107505588	1.3	[{'connected_gene': 'LOC105376206', 'score': 550.77}, {'connected_gene': 'KLF4', 'score': 0.39}]
chr9	GH09I107566	107566165	107567438	0.2	[{'connected_gene': 'LOC105376205', 'score': 550.77}, {'connected_gene': 'KLF4', 'score': 11.52}, {'connected_gene': 'PPIAP88', 'score': 0.34}]
chr9	GH09I107465	107465201	107466600	1.13	[{'connected_gene': 'LINC01509', 'score': 550.77}, {'connected_gene': 'KLF4', 'score': 2.28}, {'connected_gene': 'HMGN2P32', 'score': 0.44}]