PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000264833	[[9964393, 9965539], [9967482, 9967589], [9967938, 9968158], [9968390, 9968537], [9971320, 9971470], [10046979, 10047228]]	[[9964861, 9965539], [9967482, 9967589], [9967938, 9968158], [9968390, 9968537], [9971320, 9971470], [10046979, 10047042]]
ENST00000590841	[[9964420, 9965539], [9967482, 9967589], [9967938, 9968158], [9968390, 9968537], [9968772, 9968844]]	[[9964861, 9965539], [9967482, 9967589], [9967938, 9968158], [9968390, 9968516]]
ENST00000592448	[[9965226, 9965539], [9967482, 9967589], [9968062, 9968158], [9968390, 9968537], [9968772, 9968822]]	[[9967574, 9967589], [9968062, 9968158], [9968390, 9968516]]
ENST00000593091	[[9965291, 9965539], [9967482, 9967589], [9967938, 9968158], [9968390, 9968537], [9971320, 9971470], [10024158, 10024512]]	[[9965291, 9965539], [9967482, 9967589], [9967938, 9968158], [9968390, 9968537], [9971320, 9971470], [10024158, 10024293]]
ENST00000590410	[[9967883, 9968158], [9968390, 9968537], [9971320, 9971470], [10046979, 10047000]]	None
NM_001304348	[[9964393, 9965539], [9967482, 9967589], [9967938, 9968158], [9968390, 9968537], [9968772, 9968844]]	[[9964861, 9965539], [9967482, 9967589], [9967938, 9968158], [9968390, 9968516]]
NM_001304347	[[9964393, 9965539], [9967482, 9967589], [9967938, 9968158], [9968390, 9968537], [9971320, 9971470], [10024158, 10024381]]	[[9964861, 9965539], [9967482, 9967589], [9967938, 9968158], [9968390, 9968537], [9971320, 9971470], [10024158, 10024293]]
NM_058164	[[9964393, 9965539], [9967482, 9967589], [9967938, 9968158], [9968390, 9968537], [9971320, 9971470], [10046979, 10047228]]	[[9964861, 9965539], [9967482, 9967589], [9967938, 9968158], [9968390, 9968537], [9971320, 9971470], [10046979, 10047042]]

Promoter

Chrom	Start	End	Description
chr19	9968816	9968862	CAGE_peak_4_at_OLFM2_5end
chr19	10047047	10047080	CAGE_peak_5_at_OLFM2_5end
chr19	10047087	10047098	CAGE_peak_7_at_OLFM2_5end
chr19	10047099	10047125	CAGE_peak_3_at_OLFM2_5end
chr19	10047135	10047164	CAGE_peak_2_at_OLFM2_5end
chr19	10047177	10047201	CAGE_peak_1_at_OLFM2_5end
chr19	10047219	10047235	CAGE_peak_6_at_OLFM2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I009936	9936000	9937674	1.77	[{'connected_gene': 'OLFM2', 'score': 559.48}, {'connected_gene': 'ZNF177', 'score': 16.49}, {'connected_gene': 'ENSG00000267273', 'score': 10.11}, {'connected_gene': 'ENSG00000200237', 'score': 9.82}, {'connected_gene': 'OR7D2', 'score': 5.06}, {'connected_gene': 'ENSG00000267650', 'score': 0.22}]
chr19	GH19I009958	9958036	9959099	0.46	[{'connected_gene': 'OLFM2', 'score': 12.84}, {'connected_gene': 'RDH8', 'score': 12.03}, {'connected_gene': 'COL5A3', 'score': 12.03}, {'connected_gene': 'PDE4A', 'score': 5.32}, {'connected_gene': 'ENSG00000267650', 'score': 0.28}]
chr19	GH19I009913	9913600	9915253	2.23	[{'connected_gene': 'OLFM2', 'score': 564.25}, {'connected_gene': 'RDH8', 'score': 11.2}, {'connected_gene': 'COL5A3', 'score': 11.2}, {'connected_gene': 'ENSG00000267273', 'score': 9.81}, {'connected_gene': 'ZNF266', 'score': 4.76}, {'connected_gene': 'GC19P009927', 'score': 0.39}, {'connected_gene': 'PIR54152', 'score': 0.18}]
chr19	GH19I010018	10018345	10018494	0.31	[{'connected_gene': 'OLFM2', 'score': 11.32}, {'connected_gene': 'RDH8', 'score': 0.44}, {'connected_gene': 'C3P1', 'score': 0.37}]
chr19	GH19I009944	9944581	9946480	1.36	[{'connected_gene': 'OLFM2', 'score': 16.67}, {'connected_gene': 'ZNF846', 'score': 2.06}, {'connected_gene': 'COL5A3', 'score': 1.45}, {'connected_gene': 'ENSG00000267650', 'score': 0.23}]
chr19	GH19I009857	9857201	9859129	1.55	[{'connected_gene': 'OLFM2', 'score': 550.18}, {'connected_gene': 'ZNF266', 'score': 5.45}, {'connected_gene': 'PIR54152', 'score': 0.37}, {'connected_gene': 'GC19P009927', 'score': 0.2}]
chr19	GH19I009952	9952365	9952514	0.52	[{'connected_gene': 'OLFM2', 'score': 0.37}, {'connected_gene': 'ENSG00000267650', 'score': 0.26}]
chr19	GH19I009935	9935810	9935954	0.75	[{'connected_gene': 'OLFM2', 'score': 550.77}, {'connected_gene': 'GC19P009927', 'score': 0.44}]
chr19	GH19I009883	9883236	9883918	0.38	[{'connected_gene': 'ZNF559', 'score': 5.0}, {'connected_gene': 'GC19P009927', 'score': 0.26}, {'connected_gene': 'PIR54152', 'score': 0.25}, {'connected_gene': 'OLFM2', 'score': 0.23}]
chr19	GH19I010071	10071225	10071374	0.62	[{'connected_gene': 'ANGPTL6', 'score': 11.91}, {'connected_gene': 'PPAN-P2RY11', 'score': 11.91}, {'connected_gene': 'PPAN', 'score': 11.91}, {'connected_gene': 'RDH8', 'score': 11.86}, {'connected_gene': 'COL5A3', 'score': 11.84}, {'connected_gene': 'EIF3G', 'score': 11.74}, {'connected_gene': 'OLFM2', 'score': 11.14}, {'connected_gene': 'C19orf66', 'score': 0.39}, {'connected_gene': 'C3P1', 'score': 0.29}, {'connected_gene': 'MIR5589', 'score': 0.29}]
chr19	GH19I009933	9933885	9934770	0.91	[{'connected_gene': 'ZNF177', 'score': 16.49}, {'connected_gene': 'OLFM2', 'score': 14.94}, {'connected_gene': 'ENSG00000267273', 'score': 10.11}, {'connected_gene': 'ENSG00000200237', 'score': 9.83}, {'connected_gene': 'GC19P009927', 'score': 0.44}]
chr19	GH19I009948	9948633	9949140	0.62	[{'connected_gene': 'ZNF177', 'score': 16.49}, {'connected_gene': 'OLFM2', 'score': 12.96}, {'connected_gene': 'ENSG00000267273', 'score': 10.11}, {'connected_gene': 'ENSG00000200237', 'score': 9.82}, {'connected_gene': 'ENSG00000267650', 'score': 0.25}]
chr19	GH19I009869	9869033	9869324	0.48	[{'connected_gene': 'ZNF177', 'score': 2.48}, {'connected_gene': 'ZNF846', 'score': 2.44}, {'connected_gene': 'OLFM2', 'score': 1.31}, {'connected_gene': 'PIR54152', 'score': 0.29}, {'connected_gene': 'GC19P009927', 'score': 0.22}]
chr19	GH19I009986	9986549	9987508	0.2	[{'connected_gene': 'COL5A3', 'score': 23.94}, {'connected_gene': 'RDH8', 'score': 12.3}, {'connected_gene': 'OLFM2', 'score': 12.0}, {'connected_gene': 'C19orf66', 'score': 11.22}, {'connected_gene': 'ENSG00000267650', 'score': 0.44}]
chr19	GH19I009941	9941110	9941974	0.56	[{'connected_gene': 'COL5A3', 'score': 12.28}, {'connected_gene': 'RDH8', 'score': 12.27}, {'connected_gene': 'C19orf66', 'score': 11.38}, {'connected_gene': 'OLFM2', 'score': 0.77}, {'connected_gene': 'ENSG00000267650', 'score': 0.23}]
chr19	GH19I009940	9940854	9940994	0.56	[{'connected_gene': 'COL5A3', 'score': 12.28}, {'connected_gene': 'RDH8', 'score': 12.27}, {'connected_gene': 'C19orf66', 'score': 11.38}, {'connected_gene': 'OLFM2', 'score': 0.77}, {'connected_gene': 'ENSG00000267650', 'score': 0.22}]
chr19	GH19I009930	9930965	9931134	0.77	[{'connected_gene': 'COL5A3', 'score': 12.0}, {'connected_gene': 'RDH8', 'score': 11.99}, {'connected_gene': 'C19orf66', 'score': 10.72}, {'connected_gene': 'GC19P009927', 'score': 0.77}, {'connected_gene': 'OLFM2', 'score': 0.44}]
chr19	GH19I009862	9862131	9863800	0.94	[{'connected_gene': 'ILF3', 'score': 15.0}, {'connected_gene': 'PPAN', 'score': 13.93}, {'connected_gene': 'KRI1', 'score': 13.35}, {'connected_gene': 'ZNF266', 'score': 13.23}, {'connected_gene': 'ZNF561', 'score': 12.99}, {'connected_gene': 'ZNF426', 'score': 12.91}, {'connected_gene': 'ZNF846', 'score': 12.71}, {'connected_gene': 'ZNF699', 'score': 12.09}, {'connected_gene': 'FBXL12', 'score': 11.91}, {'connected_gene': 'LOC100419831', 'score': 10.79}, {'connected_gene': 'EIF3G', 'score': 9.86}, {'connected_gene': 'ZNF317', 'score': 9.83}, {'connected_gene': 'PIR54152', 'score': 0.34}, {'connected_gene': 'GC19P009927', 'score': 0.21}, {'connected_gene': 'OLFM2', 'score': 0.19}]
chr19	GH19I009877	9877905	9878054	0.49	[{'connected_gene': 'PIN1', 'score': 11.94}, {'connected_gene': 'RDH8', 'score': 11.14}, {'connected_gene': 'COL5A3', 'score': 11.14}, {'connected_gene': 'OLFM2', 'score': 10.96}, {'connected_gene': 'PIR54152', 'score': 0.28}, {'connected_gene': 'GC19P009927', 'score': 0.25}]
chr19	GH19I009864	9864386	9865617	0.2	[{'connected_gene': 'ZNF846', 'score': 5.47}, {'connected_gene': 'ZNF561', 'score': 4.76}, {'connected_gene': 'ZNF559', 'score': 4.76}, {'connected_gene': 'PIR54152', 'score': 0.31}, {'connected_gene': 'GC19P009927', 'score': 0.21}, {'connected_gene': 'OLFM2', 'score': 0.19}]
chr19	GH19I009917	9917365	9917601	1.06	[{'connected_gene': 'LOC100128428', 'score': 27.15}, {'connected_gene': 'COL5A3', 'score': 11.95}, {'connected_gene': 'RDH8', 'score': 11.94}, {'connected_gene': 'QTRT1', 'score': 11.48}, {'connected_gene': 'C19orf66', 'score': 10.97}, {'connected_gene': 'OR7D2', 'score': 9.84}, {'connected_gene': 'GC19P009927', 'score': 0.44}, {'connected_gene': 'OLFM2', 'score': 0.37}, {'connected_gene': 'PIR54152', 'score': 0.18}]
chr19	GH19I009906	9906303	9907197	0.2	[{'connected_gene': 'GC19P009927', 'score': 0.34}, {'connected_gene': 'OLFM2', 'score': 0.31}, {'connected_gene': 'PIR54152', 'score': 0.2}]
chr19	GH19I009867	9866001	9866494	0.71	[{'connected_gene': 'PIR54152', 'score': 0.31}, {'connected_gene': 'GC19P009927', 'score': 0.21}, {'connected_gene': 'OLFM2', 'score': 0.19}]
chr19	GH19I009863	9863885	9864034	0.4	[{'connected_gene': 'PIR54152', 'score': 0.31}, {'connected_gene': 'GC19P009927', 'score': 0.21}, {'connected_gene': 'OLFM2', 'score': 0.19}]
chr19	GH19I009866	9866585	9866734	0.51	[{'connected_gene': 'PIR54152', 'score': 0.31}, {'connected_gene': 'GC19P009927', 'score': 0.21}, {'connected_gene': 'OLFM2', 'score': 0.2}]
chr19	GH19I009885	9885265	9885414	0.54	[{'connected_gene': 'GC19P009927', 'score': 0.26}, {'connected_gene': 'PIR54152', 'score': 0.25}, {'connected_gene': 'OLFM2', 'score': 0.23}]
chr19	GH19I009638	9638207	9638495	0.24	[{'connected_gene': 'PIR53474', 'score': 550.77}, {'connected_gene': 'ZNF561', 'score': 29.83}, {'connected_gene': 'OR7D4', 'score': 14.79}, {'connected_gene': 'ZNF846', 'score': 13.13}, {'connected_gene': 'ZNF177', 'score': 5.39}, {'connected_gene': 'OR7E24', 'score': 4.49}, {'connected_gene': 'OLFM2', 'score': 3.65}, {'connected_gene': 'ZNF559', 'score': 2.86}, {'connected_gene': 'ZNF562', 'score': 1.94}, {'connected_gene': 'ZNF426', 'score': 1.55}, {'connected_gene': 'ZNF559-ZNF177', 'score': 1.41}, {'connected_gene': 'PIR44678', 'score': 0.77}, {'connected_gene': 'ZNF561-AS1', 'score': 0.37}]
chr19	GH19I009966	9966625	9966774	0.59	[{'connected_gene': 'ENSG00000267510', 'score': 12.54}, {'connected_gene': 'UBE2L4', 'score': 12.07}, {'connected_gene': 'OLFM2', 'score': 7.4}, {'connected_gene': 'ENSG00000267650', 'score': 0.31}, {'connected_gene': 'COL5A3', 'score': 0.26}]
chr19	GH19I009927	9927510	9927774	0.63	[{'connected_gene': 'GC19P009927', 'score': 550.77}, {'connected_gene': 'COL5A3', 'score': 11.87}, {'connected_gene': 'RDH8', 'score': 11.87}, {'connected_gene': 'C19orf66', 'score': 11.53}, {'connected_gene': 'UBL5', 'score': 11.09}, {'connected_gene': 'MRPL4', 'score': 10.24}, {'connected_gene': 'ICAM1', 'score': 10.24}, {'connected_gene': 'OLFM2', 'score': 0.44}]
chr19	GH19I009666	9666007	9666420	0.32	[{'connected_gene': 'PIR46077', 'score': 550.77}, {'connected_gene': 'ZNF846', 'score': 13.96}, {'connected_gene': 'ZNF559', 'score': 4.92}, {'connected_gene': 'ZNF559-ZNF177', 'score': 2.68}, {'connected_gene': 'OR7D4', 'score': 1.51}, {'connected_gene': 'ZNF121', 'score': 1.39}, {'connected_gene': 'ZNF426', 'score': 1.27}, {'connected_gene': 'OLFM2', 'score': 1.16}, {'connected_gene': 'ZNF177', 'score': 1.15}, {'connected_gene': 'ZNF562', 'score': 0.44}]