PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000054666	[[7831328, 7831445], [7833501, 7833571], [7837219, 7837378], [7838177, 7838229], [7839685, 7841492]]	[[7831443, 7831445], [7833501, 7833571], [7837219, 7837378], [7838177, 7838229], [7839685, 7839705]]
ENST00000470357	[[7832766, 7833258], [7833501, 7833571], [7837219, 7837378], [7838177, 7838229], [7839685, 7839866]]	[[7837231, 7837378], [7838177, 7838229], [7839685, 7839705]]
ENST00000487194	[[7837156, 7837378], [7838177, 7838229]]	None
NM_004781	[[7831328, 7831445], [7833501, 7833571], [7837219, 7837378], [7838177, 7838229], [7839685, 7841492]]	[[7831443, 7831445], [7833501, 7833571], [7837219, 7837378], [7838177, 7838229], [7839685, 7839705]]

Promoter

Chrom	Start	End	Description
chr1	7831323	7831414	CAGE_peak_1_at_VAMP3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I007706	7706161	7706310	0.31	[{'connected_gene': 'VAMP3', 'score': 11.01}, {'connected_gene': 'ENSG00000236266', 'score': 10.2}, {'connected_gene': 'PER3', 'score': 10.16}, {'connected_gene': 'TNFRSF9', 'score': 10.07}, {'connected_gene': 'LOC105376689', 'score': 0.77}, {'connected_gene': 'CAMTA1', 'score': 0.03}]
chr1	GH01I007885	7885425	7886264	0.77	[{'connected_gene': 'VAMP3', 'score': 5.64}, {'connected_gene': 'PARK7', 'score': 5.52}, {'connected_gene': 'UTS2', 'score': 0.31}, {'connected_gene': 'ENSG00000236266', 'score': 0.22}]
chr1	GH01I007770	7770173	7772470	2.01	[{'connected_gene': 'VAMP3', 'score': 558.78}, {'connected_gene': 'ENSG00000269925', 'score': 6.68}, {'connected_gene': 'UTS2', 'score': 5.7}, {'connected_gene': 'ENSG00000270171', 'score': 5.39}, {'connected_gene': 'PARK7', 'score': 5.3}]
chr1	GH01I007729	7729941	7730090	0.31	[{'connected_gene': 'PER3', 'score': 10.95}, {'connected_gene': 'VAMP3', 'score': 10.69}, {'connected_gene': 'UTS2', 'score': 10.04}, {'connected_gene': 'LOC105376689', 'score': 0.31}, {'connected_gene': 'CAMTA1', 'score': 0.02}]
chr1	GH01I007782	7782963	7785366	2.22	[{'connected_gene': 'PER3', 'score': 554.8}, {'connected_gene': 'VAMP3', 'score': 5.69}, {'connected_gene': 'UTS2', 'score': 4.59}, {'connected_gene': 'ENSG00000269925', 'score': 0.44}]
chr1	GH01I007752	7752401	7753530	0.97	[{'connected_gene': 'PER3', 'score': 10.6}, {'connected_gene': 'TNFRSF9', 'score': 9.91}, {'connected_gene': 'ENSG00000270171', 'score': 5.53}, {'connected_gene': 'ENSG00000270035', 'score': 4.86}, {'connected_gene': 'VAMP3', 'score': 0.37}, {'connected_gene': 'LOC105376689', 'score': 0.25}, {'connected_gene': 'CAMTA1', 'score': 0.03}]
chr1	GH01I007893	7893941	7894090	0.46	[{'connected_gene': 'PARK7', 'score': 11.3}, {'connected_gene': 'ENSG00000236266', 'score': 11.13}, {'connected_gene': 'PER3', 'score': 10.77}, {'connected_gene': 'VAMP3', 'score': 10.18}, {'connected_gene': 'SLC45A1', 'score': 8.88}, {'connected_gene': 'UTS2', 'score': 0.37}]
chr1	GH01I007902	7902401	7903469	1.08	[{'connected_gene': 'UTS2', 'score': 17.18}, {'connected_gene': 'PER3', 'score': 10.82}, {'connected_gene': 'VAMP3', 'score': 10.34}, {'connected_gene': 'PARK7', 'score': 8.28}, {'connected_gene': 'ENSG00000238290', 'score': 4.49}, {'connected_gene': 'ENSG00000236266', 'score': 0.18}]
chr1	GH01I007912	7912676	7913652	0.77	[{'connected_gene': 'UTS2', 'score': 584.35}, {'connected_gene': 'TNFRSF9', 'score': 11.58}, {'connected_gene': 'VAMP3', 'score': 10.48}, {'connected_gene': 'PER3', 'score': 10.35}, {'connected_gene': 'SLC45A1', 'score': 9.43}, {'connected_gene': 'ENSG00000238290', 'score': 8.86}, {'connected_gene': 'ENSG00000236266', 'score': 0.17}]
chr1	GH01I007703	7703724	7706031	1.47	[{'connected_gene': 'LOC105376689', 'score': 550.77}, {'connected_gene': 'PER3', 'score': 17.02}, {'connected_gene': 'ENSG00000270171', 'score': 11.42}, {'connected_gene': 'VAMP3', 'score': 11.01}, {'connected_gene': 'SLC45A1', 'score': 10.49}, {'connected_gene': 'ENSG00000236266', 'score': 10.2}, {'connected_gene': 'TNFRSF9', 'score': 10.07}, {'connected_gene': 'CAMTA1', 'score': 5.63}]
chr1	GH01I007678	7678555	7681883	1.06	[{'connected_gene': 'ENSG00000270171', 'score': 13.69}, {'connected_gene': 'VAMP3', 'score': 11.29}, {'connected_gene': 'PER3', 'score': 10.81}, {'connected_gene': 'CAMTA1', 'score': 9.41}, {'connected_gene': 'GC01P007609', 'score': 0.19}]
chr1	GH01I007681	7681946	7682081	0.34	[{'connected_gene': 'ENSG00000270171', 'score': 13.68}, {'connected_gene': 'PER3', 'score': 12.17}, {'connected_gene': 'VAMP3', 'score': 11.3}, {'connected_gene': 'GC01P007609', 'score': 0.19}, {'connected_gene': 'CAMTA1', 'score': 0.03}]
chr1	GH01I008088	8088625	8099573	1.74	[{'connected_gene': 'ENSG00000238290', 'score': 24.59}, {'connected_gene': 'SLC45A1', 'score': 11.47}, {'connected_gene': 'PARK7', 'score': 8.26}, {'connected_gene': 'LOC100129776', 'score': 4.77}, {'connected_gene': 'VAMP3', 'score': 1.68}, {'connected_gene': 'RPL7AP18', 'score': 0.28}]
chr1	GH01I008126	8126602	8128404	1.19	[{'connected_gene': 'ENSG00000238290', 'score': 10.94}, {'connected_gene': 'PARK7', 'score': 5.64}, {'connected_gene': 'VAMP3', 'score': 1.76}, {'connected_gene': 'TNFRSF9', 'score': 1.55}, {'connected_gene': 'LOC100129776', 'score': 0.21}, {'connected_gene': 'RPL7AP18', 'score': 0.2}]
chr1	GH01I007993	7993156	7994944	1.38	[{'connected_gene': 'ENSG00000238290', 'score': 41.3}, {'connected_gene': 'PARK7', 'score': 11.6}, {'connected_gene': 'ERRFI1', 'score': 11.51}, {'connected_gene': 'SLC45A1', 'score': 10.89}, {'connected_gene': 'TNFRSF9', 'score': 10.38}, {'connected_gene': 'PER3', 'score': 9.07}, {'connected_gene': 'VAMP3', 'score': 8.8}, {'connected_gene': 'ENSG00000284747', 'score': 0.77}, {'connected_gene': 'ENSG00000284716', 'score': 0.44}]
chr1	GH01I007991	7991225	7992943	0.52	[{'connected_gene': 'ENSG00000284747', 'score': 550.77}, {'connected_gene': 'ENSG00000238290', 'score': 17.77}, {'connected_gene': 'PARK7', 'score': 11.6}, {'connected_gene': 'ERRFI1', 'score': 11.51}, {'connected_gene': 'SLC45A1', 'score': 10.89}, {'connected_gene': 'TNFRSF9', 'score': 10.4}, {'connected_gene': 'PER3', 'score': 9.07}, {'connected_gene': 'VAMP3', 'score': 8.8}, {'connected_gene': 'ENSG00000284716', 'score': 0.44}]
chr1	GH01I007929	7929606	7931819	0.64	[{'connected_gene': 'PIR36767', 'score': 550.77}, {'connected_gene': 'PARK7', 'score': 25.24}, {'connected_gene': 'UTS2', 'score': 16.03}, {'connected_gene': 'VAMP3', 'score': 10.32}, {'connected_gene': 'SLC45A1', 'score': 9.48}, {'connected_gene': 'GC01P007941', 'score': 0.39}, {'connected_gene': 'TNFRSF9', 'score': 0.39}]