PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000376387	[[100153670, 100154031], [100169867, 100169935], [100172289, 100172383], [100181720, 100181848], [100188861, 100188991], [100189992, 100190117], [100191699, 100191811], [100192967, 100193047], [100193812, 100193921], [100196116, 100196249], [100199238, 100199358], [100201418, 100201476], [100204420, 100204580], [100206557, 100206709], [100207789, 100207901], [100211616, 100211788], [100214944, 100216260]]	[[100153860, 100154031], [100169867, 100169935], [100172289, 100172383], [100181720, 100181848], [100188861, 100188991], [100189992, 100190117], [100191699, 100191811], [100192967, 100193047], [100193812, 100193921], [100196116, 100196249], [100199238, 100199358], [100201418, 100201476], [100204420, 100204580], [100206557, 100206709], [100207789, 100207901], [100211616, 100211788], [100214944, 100215012]]
ENST00000463709	[[100166468, 100166570], [100169867, 100169935], [100171801, 100171882], [100172289, 100172383], [100181720, 100181848], [100188861, 100188991], [100189992, 100190116]]	None
ENST00000466555	[[100192764, 100193047], [100193812, 100193990]]	None
NM_004800	[[100153627, 100154031], [100169867, 100169935], [100172289, 100172383], [100181720, 100181848], [100188861, 100188991], [100189992, 100190117], [100191699, 100191811], [100192967, 100193047], [100193812, 100193921], [100196116, 100196249], [100199238, 100199358], [100201418, 100201476], [100204420, 100204580], [100206557, 100206709], [100207789, 100207901], [100211616, 100211788], [100214944, 100216302]]	[[100153860, 100154031], [100169867, 100169935], [100172289, 100172383], [100181720, 100181848], [100188861, 100188991], [100189992, 100190117], [100191699, 100191811], [100192967, 100193047], [100193812, 100193921], [100196116, 100196249], [100199238, 100199358], [100201418, 100201476], [100204420, 100204580], [100206557, 100206709], [100207789, 100207901], [100211616, 100211788], [100214944, 100215012]]

Promoter

Chrom	Start	End	Description
chr13	100153651	100153664	CAGE_peak_5_at_TM9SF2_5end
chr13	100153665	100153688	CAGE_peak_4_at_TM9SF2_5end
chr13	100153689	100153710	CAGE_peak_3_at_TM9SF2_5end
chr13	100153718	100153734	CAGE_peak_2_at_TM9SF2_5end
chr13	100153737	100153785	CAGE_peak_1_at_TM9SF2_5end
chr13	100153789	100153796	CAGE_peak_6_at_TM9SF2_5end
chr13	100166452	100166468	CAGE_peak_16_at_TM9SF2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I099499	99499931	99503521	2.49	[{'connected_gene': 'TM9SF2', 'score': 555.28}, {'connected_gene': 'LINC00449', 'score': 550.77}, {'connected_gene': 'STK24-AS1', 'score': 11.08}, {'connected_gene': 'GPR183', 'score': 7.95}, {'connected_gene': 'ENSG00000280710', 'score': 0.77}, {'connected_gene': 'GC13P099488', 'score': 0.39}, {'connected_gene': 'RNY3P6', 'score': 0.29}, {'connected_gene': 'GC13M099538', 'score': 0.29}]
chr13	GH13I099442	99442407	99442556	0.62	[{'connected_gene': 'TM9SF2', 'score': 13.12}, {'connected_gene': 'LINC00449', 'score': 12.53}, {'connected_gene': 'CCR12P', 'score': 0.29}, {'connected_gene': 'GC13P099473', 'score': 0.29}]
chr13	GH13I099467	99467927	99468056	0.2	[{'connected_gene': 'TM9SF2', 'score': 13.52}, {'connected_gene': 'LINC00449', 'score': 12.79}, {'connected_gene': 'GC13P099473', 'score': 0.44}, {'connected_gene': 'CCR12P', 'score': 0.22}]
chr13	GH13I099545	99545191	99546116	0.38	[{'connected_gene': 'TM9SF2', 'score': 4.55}, {'connected_gene': 'RNY3P6', 'score': 0.44}, {'connected_gene': 'GC13M099538', 'score': 0.44}, {'connected_gene': 'GC13M099563', 'score': 0.34}]
chr13	GH13I099554	99554351	99555952	0.46	[{'connected_gene': 'TM9SF2', 'score': 5.47}, {'connected_gene': 'GC13M099563', 'score': 0.39}, {'connected_gene': 'RNY3P6', 'score': 0.37}, {'connected_gene': 'GC13M099538', 'score': 0.37}]
chr13	GH13I099504	99504401	99504600	0.2	[{'connected_gene': 'TM9SF2', 'score': 0.77}, {'connected_gene': 'GC13P099488', 'score': 0.37}, {'connected_gene': 'RNY3P6', 'score': 0.29}, {'connected_gene': 'GC13M099538', 'score': 0.29}]
chr13	GH13I099464	99464201	99465333	0.69	[{'connected_gene': 'TM9SF2', 'score': 5.21}, {'connected_gene': 'GC13P099473', 'score': 0.44}, {'connected_gene': 'CCR12P', 'score': 0.22}]
chr13	GH13I099484	99484201	99485000	0.94	[{'connected_gene': 'TM9SF2', 'score': 9.12}, {'connected_gene': 'GC13P099488', 'score': 0.77}, {'connected_gene': 'GC13P099473', 'score': 0.39}]
chr13	GH13I099419	99419537	99421121	1.47	[{'connected_gene': 'MIR623', 'score': 11.93}, {'connected_gene': 'GPR18', 'score': 11.8}, {'connected_gene': 'GPR183', 'score': 6.67}, {'connected_gene': 'TM9SF2', 'score': 5.28}, {'connected_gene': 'CCR12P', 'score': 0.39}, {'connected_gene': 'GC13P099473', 'score': 0.23}]
chr13	GH13I099436	99436601	99437495	1.38	[{'connected_gene': 'GPR18', 'score': 15.87}, {'connected_gene': 'TM9SF2', 'score': 11.72}, {'connected_gene': 'LINC00449', 'score': 11.72}, {'connected_gene': 'MIR623', 'score': 11.55}, {'connected_gene': 'STK24', 'score': 10.85}, {'connected_gene': 'CCR12P', 'score': 0.31}, {'connected_gene': 'GC13P099473', 'score': 0.28}]
chr13	GH13I099431	99431311	99436344	1.7	[{'connected_gene': 'GPR18', 'score': 16.2}, {'connected_gene': 'TM9SF2', 'score': 11.72}, {'connected_gene': 'LINC00449', 'score': 11.72}, {'connected_gene': 'MIR623', 'score': 11.55}, {'connected_gene': 'GPR183', 'score': 10.06}, {'connected_gene': 'CCR12P', 'score': 0.34}, {'connected_gene': 'GC13P099473', 'score': 0.26}]
chr13	GH13I099505	99505401	99508409	1.12	[{'connected_gene': 'GPR18', 'score': 10.38}, {'connected_gene': 'TM9SF2', 'score': 7.63}, {'connected_gene': 'DOCK9-AS2', 'score': 4.58}, {'connected_gene': 'GC13P099488', 'score': 0.37}, {'connected_gene': 'RNY3P6', 'score': 0.31}, {'connected_gene': 'GC13M099538', 'score': 0.31}]
chr13	GH13I099423	99423770	99426784	1.39	[{'connected_gene': 'GPR183', 'score': 8.33}, {'connected_gene': 'TM9SF2', 'score': 5.15}, {'connected_gene': 'GPR18', 'score': 4.93}, {'connected_gene': 'CCR12P', 'score': 0.37}, {'connected_gene': 'GC13P099473', 'score': 0.25}]
chr13	GH13I099541	99541624	99544023	0.99	[{'connected_gene': 'CLYBL', 'score': 11.87}, {'connected_gene': 'TM9SF2', 'score': 4.64}, {'connected_gene': 'RNY3P6', 'score': 0.44}, {'connected_gene': 'GC13M099538', 'score': 0.44}, {'connected_gene': 'GC13M099563', 'score': 0.31}]
chr13	GH13I099605	99605224	99607576	2.01	[{'connected_gene': 'CLYBL', 'score': 556.47}, {'connected_gene': 'LOC105370332', 'score': 550.77}, {'connected_gene': 'GPR18', 'score': 9.34}, {'connected_gene': 'TM9SF2', 'score': 4.57}, {'connected_gene': 'GC13M099598', 'score': 0.44}]
chr13	GH13I099495	99495350	99499675	1.74	[{'connected_gene': 'LINC01232', 'score': 550.77}, {'connected_gene': 'ENSG00000280710', 'score': 550.77}, {'connected_gene': 'TM9SF2', 'score': 11.85}, {'connected_gene': 'GC13P099488', 'score': 0.44}]
chr13	GH13I099600	99600387	99600556	0.52	[{'connected_gene': 'GC13M099598', 'score': 550.77}, {'connected_gene': 'CLYBL', 'score': 6.07}, {'connected_gene': 'TM9SF2', 'score': 4.52}, {'connected_gene': 'LOC105370332', 'score': 0.44}]