PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000539841	[[62756625, 62763624], [62766392, 62766971]]	None
ENST00000336232	[[62760295, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62782097, 62782455], [62783200, 62783311]]	[[62760708, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62782097, 62782430]]
ENST00000451262	[[62760296, 62761099], [62761241, 62762929]]	None
ENST00000545207	[[62760554, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62782097, 62782182], [62783200, 62783287]]	[[62760708, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62782097, 62782157]]
ENST00000535878	[[62760699, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62783200, 62783282]]	[[62760708, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768259]]
ENST00000311438	[[62760708, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62782097, 62782430]]	[[62760822, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62782097, 62782430]]
ENST00000430500	[[62760708, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62782097, 62782434], [62783200, 62783311]]	[[62760708, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62782097, 62782430]]
ENST00000542795	[[62763563, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62768413, 62768467]]	None
ENST00000542904	[[62763577, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768468]]	None
ENST00000544707	[[62782045, 62782455], [62783200, 62783311]]	None
NM_004254	[[62760295, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62782097, 62782455], [62783200, 62783317]]	[[62760708, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62782097, 62782430]]
NM_001184732	[[62760295, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62782097, 62782434], [62783200, 62783317]]	[[62760708, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62782097, 62782430]]
NM_001184733	[[62760295, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62782097, 62782182], [62783200, 62783317]]	[[62760708, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62782097, 62782157]]
NM_001184736	[[62760295, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768295], [62783200, 62783317]]	[[62760708, 62760808], [62760895, 62761099], [62761241, 62761350], [62762013, 62762228], [62763175, 62763291], [62763500, 62763624], [62766392, 62766561], [62767159, 62767314], [62768191, 62768259]]

Promoter

Chrom	Start	End	Description
chr11	62783276	62783295	CAGE_peak_2_at_SLC22A8_5end
chr11	62783303	62783320	CAGE_peak_1_at_SLC22A8_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I062896	62896147	62896763	0.31	[{'connected_gene': 'SLC22A8', 'score': 11.0}, {'connected_gene': 'BSCL2', 'score': 5.49}, {'connected_gene': 'ROM1', 'score': 5.15}, {'connected_gene': 'GC11P062886', 'score': 0.44}, {'connected_gene': 'ENSG00000257002', 'score': 0.39}]
chr11	GH11I063245	63245872	63249207	0.81	[{'connected_gene': 'SLC22A8', 'score': 10.65}, {'connected_gene': 'SLC22A9', 'score': 10.49}, {'connected_gene': 'SLC22A25', 'score': 9.57}, {'connected_gene': 'LOC105369334', 'score': 0.77}, {'connected_gene': 'SLC22A10', 'score': 0.14}]
chr11	GH11I063021	63021069	63021218	0.54	[{'connected_gene': 'SLC22A8', 'score': 0.44}, {'connected_gene': 'GC11P063016', 'score': 0.44}, {'connected_gene': 'LOC100127954', 'score': 0.39}]
chr11	GH11I063020	63020749	63020918	0.64	[{'connected_gene': 'SLC22A8', 'score': 0.77}, {'connected_gene': 'GC11P063016', 'score': 0.44}, {'connected_gene': 'LOC100127954', 'score': 0.39}]
chr11	GH11I062895	62895300	62895780	0.31	[{'connected_gene': 'SLC22A8', 'score': 11.0}, {'connected_gene': 'GC11P062886', 'score': 0.44}, {'connected_gene': 'ENSG00000257002', 'score': 0.39}]
chr11	GH11I063012	63012407	63013033	0.6	[{'connected_gene': 'SLC22A8', 'score': 0.77}, {'connected_gene': 'GC11P063016', 'score': 0.77}, {'connected_gene': 'PIR40065', 'score': 0.31}]
chr11	GH11I063015	63015802	63015861	0.61	[{'connected_gene': 'SLC22A8', 'score': 550.77}, {'connected_gene': 'GC11P063016', 'score': 550.77}]
chr11	GH11I063023	63023618	63024758	0.98	[{'connected_gene': 'COX8A', 'score': 4.93}, {'connected_gene': 'SLC22A8', 'score': 0.44}, {'connected_gene': 'LOC100127954', 'score': 0.44}, {'connected_gene': 'GC11P063016', 'score': 0.44}]