PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000493368	[[37422662, 37422802], [37424841, 37424972], [37425918, 37425991], [37426534, 37426651], [37428480, 37429155]]	None
ENST00000318158	[[37422662, 37422830], [37424841, 37424972], [37425918, 37425991], [37426534, 37426651], [37428480, 37428569], [37429728, 37429833], [37430507, 37430643], [37432004, 37432135], [37436657, 37436987]]	[[37422747, 37422830], [37424841, 37424972], [37425918, 37425991], [37426534, 37426651], [37428480, 37428569], [37429728, 37429833], [37430507, 37430643], [37432004, 37432135], [37436657, 37436779]]
ENST00000460882	[[37422692, 37422802], [37424841, 37424972], [37425918, 37425991], [37426534, 37426651], [37428480, 37428569], [37429728, 37429833], [37430507, 37430643], [37432004, 37432135], [37436657, 37436845]]	None
ENST00000487399	[[37422710, 37422802], [37424841, 37424972], [37425918, 37426647]]	None
ENST00000377824	[[37422710, 37422830], [37424841, 37424972], [37425918, 37425991], [37426534, 37426651], [37428480, 37428569], [37429728, 37429833], [37430507, 37431716]]	None
ENST00000491488	[[37422721, 37422830], [37428480, 37428569], [37429728, 37429833], [37430507, 37430643], [37432004, 37432135], [37436657, 37436689]]	None
ENST00000607784	[[37422742, 37422830], [37424841, 37424972], [37425918, 37425991], [37426534, 37426651], [37428480, 37428569], [37429728, 37429833], [37430507, 37430643], [37432004, 37432135], [37434042, 37434876]]	[[37422747, 37422830], [37424841, 37424972], [37425918, 37425991], [37426534, 37426651], [37428480, 37428569], [37429728, 37429833], [37430507, 37430643], [37432004, 37432135], [37434042, 37434254]]
ENST00000497693	[[37427702, 37432135], [37436657, 37436986]]	None
ENST00000480596	[[37428534, 37429833], [37430507, 37430643], [37432004, 37432135], [37436657, 37436984]]	None
ENST00000494290	[[37428991, 37429833], [37430507, 37431148], [37436877, 37436987]]	[[37429664, 37429833], [37430507, 37431097]]
ENST00000482603	[[37429782, 37429833], [37430507, 37430643], [37432004, 37432135], [37432529, 37432808]]	None
ENST00000512404	[[37432083, 37432405], [37433830, 37433878]]	None
NM_012203	[[37422706, 37422830], [37424841, 37424972], [37425918, 37425991], [37426534, 37426651], [37428480, 37428569], [37429728, 37429833], [37430507, 37430643], [37432004, 37432135], [37436657, 37436986]]	[[37422747, 37422830], [37424841, 37424972], [37425918, 37425991], [37426534, 37426651], [37428480, 37428569], [37429728, 37429833], [37430507, 37430643], [37432004, 37432135], [37436657, 37436779]]

Promoter

Chrom	Start	End	Description
chr9	37422550	37422578	CAGE_peak_3_at_GRHPR_5end
chr9	37422670	37422728	CAGE_peak_1_at_GRHPR_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I037408	37408285	37410827	1.34	[{'connected_gene': 'ZBTB5', 'score': 10.43}, {'connected_gene': 'GRHPR', 'score': 7.81}, {'connected_gene': 'PAX5', 'score': 5.14}, {'connected_gene': 'ZCCHC7', 'score': 2.21}, {'connected_gene': 'TOMM5', 'score': 1.61}, {'connected_gene': 'POLR1E', 'score': 1.46}, {'connected_gene': 'LINC01627', 'score': 0.39}, {'connected_gene': 'LOC105376035', 'score': 0.26}]
chr9	GH09I037407	37407584	37407733	0.84	[{'connected_gene': 'ZBTB5', 'score': 10.43}, {'connected_gene': 'GRHPR', 'score': 7.71}, {'connected_gene': 'LINC01627', 'score': 0.39}, {'connected_gene': 'LOC105376035', 'score': 0.26}]
chr9	GH09I037410	37410904	37411293	0.88	[{'connected_gene': 'ZBTB5', 'score': 10.44}, {'connected_gene': 'ENSG00000234160', 'score': 5.32}, {'connected_gene': 'GRHPR', 'score': 0.39}, {'connected_gene': 'LINC01627', 'score': 0.37}, {'connected_gene': 'LOC105376035', 'score': 0.25}]
chr9	GH09I037463	37463345	37469184	2.28	[{'connected_gene': 'ZBTB5', 'score': 574.67}, {'connected_gene': 'DCAF10', 'score': 40.25}, {'connected_gene': 'EXOSC3', 'score': 40.2}, {'connected_gene': 'ZCCHC7', 'score': 31.65}, {'connected_gene': 'RPL21P83', 'score': 15.18}, {'connected_gene': 'RNF38', 'score': 12.37}, {'connected_gene': 'TRMT10B', 'score': 12.04}, {'connected_gene': 'GRHPR', 'score': 11.35}, {'connected_gene': 'TMX2P1', 'score': 11.23}, {'connected_gene': 'POLR1E', 'score': 10.12}, {'connected_gene': 'KCTD9P3', 'score': 0.39}]
chr9	GH09I037412	37411344	37411493	0.99	[{'connected_gene': 'ZBTB5', 'score': 23.17}, {'connected_gene': 'EXOSC3', 'score': 18.49}, {'connected_gene': 'DCAF10', 'score': 16.81}, {'connected_gene': 'ZCCHC7', 'score': 16.66}, {'connected_gene': 'GRHPR', 'score': 0.39}, {'connected_gene': 'LINC01627', 'score': 0.37}, {'connected_gene': 'LOC105376035', 'score': 0.25}]
chr9	GH09I037436	37436401	37437473	0.38	[{'connected_gene': 'ZBTB5', 'score': 11.52}, {'connected_gene': 'PIR34813', 'score': 0.77}, {'connected_gene': 'CHCHD4P3', 'score': 0.77}, {'connected_gene': 'GRHPR', 'score': 0.39}]
chr9	GH09I037430	37430596	37431414	0.94	[{'connected_gene': 'ZBTB5', 'score': 24.31}, {'connected_gene': 'CHCHD4P3', 'score': 0.77}, {'connected_gene': 'GRHPR', 'score': 0.44}]
chr9	GH09I037411	37411893	37413912	0.83	[{'connected_gene': 'GRHPR', 'score': 15.07}, {'connected_gene': 'ZBTB5', 'score': 10.49}, {'connected_gene': 'LINC01627', 'score': 0.37}, {'connected_gene': 'LOC105376035', 'score': 0.25}]
chr9	GH09I037449	37449904	37450053	0.4	[{'connected_gene': 'GRHPR', 'score': 11.84}, {'connected_gene': 'PIR45700', 'score': 0.44}, {'connected_gene': 'GC09M037461', 'score': 0.44}, {'connected_gene': 'ZBTB5', 'score': 0.37}]
chr9	GH09I037421	37421689	37424972	2.23	[{'connected_gene': 'GRHPR', 'score': 622.5}, {'connected_gene': 'SHB', 'score': 11.31}, {'connected_gene': 'CHCHD4P3', 'score': 0.39}]
chr9	GH09I037446	37446087	37447449	0.49	[{'connected_gene': 'GRHPR', 'score': 12.54}, {'connected_gene': 'PAX5', 'score': 10.02}, {'connected_gene': 'LOC105376032', 'score': 10.02}, {'connected_gene': 'PIR45700', 'score': 0.77}, {'connected_gene': 'GC09M037461', 'score': 0.39}, {'connected_gene': 'ZBTB5', 'score': 0.37}]
chr9	GH09I037416	37416423	37417188	0.31	[{'connected_gene': 'GRHPR', 'score': 0.44}, {'connected_gene': 'LINC01627', 'score': 0.34}, {'connected_gene': 'LOC105376035', 'score': 0.23}]
chr9	GH09I037418	37418264	37418433	0.75	[{'connected_gene': 'GRHPR', 'score': 0.77}, {'connected_gene': 'LINC01627', 'score': 0.34}, {'connected_gene': 'LOC105376035', 'score': 0.23}]
chr9	GH09I037404	37404921	37405987	0.76	[{'connected_gene': 'GRHPR', 'score': 8.04}, {'connected_gene': 'LINC01627', 'score': 0.39}, {'connected_gene': 'LOC105376035', 'score': 0.28}]
chr9	GH09I037476	37476984	37477133	0.38	[{'connected_gene': 'KCTD9P3', 'score': 550.77}, {'connected_gene': 'ENSG00000234160', 'score': 11.22}, {'connected_gene': 'GRHPR', 'score': 10.99}, {'connected_gene': 'ZCCHC7', 'score': 10.98}, {'connected_gene': 'ZBTB5', 'score': 0.39}]
chr9	GH09I037477	37477175	37477947	0.46	[{'connected_gene': 'KCTD9P3', 'score': 550.77}, {'connected_gene': 'ENSG00000234160', 'score': 11.22}, {'connected_gene': 'GRHPR', 'score': 10.99}, {'connected_gene': 'ZCCHC7', 'score': 10.98}, {'connected_gene': 'RPL21P83', 'score': 7.19}, {'connected_gene': 'POLR1E', 'score': 0.44}]
chr9	GH09I037485	37485062	37488539	2.21	[{'connected_gene': 'POLR1E', 'score': 580.95}, {'connected_gene': 'RPL21P83', 'score': 44.65}, {'connected_gene': 'ZCCHC7', 'score': 27.91}, {'connected_gene': 'EXOSC3', 'score': 23.7}, {'connected_gene': 'ZBTB5', 'score': 16.41}, {'connected_gene': 'FBXO10', 'score': 16.31}, {'connected_gene': 'ENSG00000234160', 'score': 12.54}, {'connected_gene': 'DCAF10', 'score': 11.04}, {'connected_gene': 'TOMM5', 'score': 10.79}, {'connected_gene': 'ENSG00000256966', 'score': 10.79}, {'connected_gene': 'TMX2P1', 'score': 9.83}, {'connected_gene': 'FRMPD1', 'score': 9.74}, {'connected_gene': 'GRHPR', 'score': 8.88}, {'connected_gene': 'GC09M037494', 'score': 0.77}]
chr9	GH09I037144	37144669	37147200	1.16	[{'connected_gene': 'PAX5', 'score': 10.97}, {'connected_gene': 'GRHPR', 'score': 5.66}, {'connected_gene': 'GC09P037160', 'score': 0.39}, {'connected_gene': 'ZCCHC7', 'score': 0.31}]
chr9	GH09I037413	37413978	37416343	1.58	[{'connected_gene': 'PAX5', 'score': 1.96}, {'connected_gene': 'GRHPR', 'score': 0.44}, {'connected_gene': 'LINC01627', 'score': 0.37}, {'connected_gene': 'LOC105376035', 'score': 0.25}]
chr9	GH09I037402	37402604	37404876	1.26	[{'connected_gene': 'PAX5', 'score': 25.95}, {'connected_gene': 'ZCCHC7', 'score': 13.09}, {'connected_gene': 'ZBTB5', 'score': 12.27}, {'connected_gene': 'LOC105376032', 'score': 10.79}, {'connected_gene': 'LOC105376034', 'score': 10.58}, {'connected_gene': 'GRHPR', 'score': 8.11}, {'connected_gene': 'LINC01627', 'score': 0.44}, {'connected_gene': 'LOC105376035', 'score': 0.28}]
chr9	GH09I037299	37299306	37305197	1.26	[{'connected_gene': 'PAX5', 'score': 11.15}, {'connected_gene': 'LOC105376032', 'score': 10.51}, {'connected_gene': 'GRHPR', 'score': 10.41}, {'connected_gene': 'GC09P037322', 'score': 0.34}, {'connected_gene': 'ENSG00000228292', 'score': 0.15}, {'connected_gene': 'ZCCHC7', 'score': 0.09}]
chr9	GH09I037433	37433450	37434793	0.58	[{'connected_gene': 'CHCHD4P3', 'score': 550.77}, {'connected_gene': 'ZBTB5', 'score': 23.55}, {'connected_gene': 'GRHPR', 'score': 6.68}]
chr9	GH09I037435	37435804	37436305	0.2	[{'connected_gene': 'CHCHD4P3', 'score': 550.77}, {'connected_gene': 'ZBTB5', 'score': 16.04}, {'connected_gene': 'GRHPR', 'score': 11.41}, {'connected_gene': 'PIR34813', 'score': 0.44}]
chr9	GH09I037432	37432594	37433327	0.38	[{'connected_gene': 'CHCHD4P3', 'score': 550.77}, {'connected_gene': 'ZBTB5', 'score': 11.24}, {'connected_gene': 'GRHPR', 'score': 0.39}]
chr9	GH09I037406	37406744	37406893	0.66	[{'connected_gene': 'LINC01627', 'score': 0.39}, {'connected_gene': 'GRHPR', 'score': 0.37}, {'connected_gene': 'LOC105376035', 'score': 0.26}]
chr9	GH09I037451	37451941	37453443	0.49	[{'connected_gene': 'RPL21P83', 'score': 18.24}, {'connected_gene': 'GRHPR', 'score': 11.7}, {'connected_gene': 'ZBTB5', 'score': 5.57}, {'connected_gene': 'GC09M037461', 'score': 0.44}, {'connected_gene': 'PIR45700', 'score': 0.39}]
chr9	GH09I037439	37439189	37443371	0.31	[{'connected_gene': 'PIR34813', 'score': 550.77}, {'connected_gene': 'PIR45700', 'score': 550.77}, {'connected_gene': 'ZBTB5', 'score': 25.25}, {'connected_gene': 'GRHPR', 'score': 11.46}, {'connected_gene': 'PAX5', 'score': 10.02}, {'connected_gene': 'LOC105376032', 'score': 10.02}, {'connected_gene': 'CHCHD4P3', 'score': 0.44}]