PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000335754	[[53901092, 53902889], [53904008, 53904172], [53905258, 53905523], [53906410, 53906551], [53907058, 53907154], [53908237, 53908391], [53909974, 53910107], [53910646, 53910740], [53911240, 53911414], [53911673, 53911778], [53912383, 53912494], [53913965, 53914136], [53916005, 53916229]]	[[53902745, 53902889], [53904008, 53904172], [53905258, 53905523], [53906410, 53906551], [53907058, 53907154], [53908237, 53908391], [53909974, 53910107], [53910646, 53910740], [53911240, 53911414], [53911673, 53911778], [53912383, 53912494], [53913965, 53914136], [53916005, 53916128]]
ENST00000488802	[[53902522, 53902889], [53904008, 53904324]]	None
ENST00000482349	[[53902528, 53902889], [53904008, 53904172], [53905258, 53905523], [53906410, 53906551], [53907058, 53907154], [53908237, 53908391], [53909974, 53910107], [53910646, 53910740], [53911240, 53911414], [53911673, 53911778], [53912383, 53912494], [53913965, 53914099], [53915692, 53915851]]	[[53902745, 53902889], [53904008, 53904172], [53905258, 53905523], [53906410, 53906551], [53907058, 53907154], [53908237, 53908391], [53909974, 53910107], [53910646, 53910740], [53911240, 53911414], [53911673, 53911778], [53912383, 53912455]]
ENST00000486794	[[53902679, 53902889], [53904008, 53904172], [53905258, 53905523], [53906410, 53906551], [53907058, 53907173], [53909974, 53910107], [53910646, 53910740], [53911240, 53911320]]	[[53902745, 53902889], [53904008, 53904172], [53905258, 53905523], [53906410, 53906551], [53907058, 53907173], [53909974, 53910107], [53910646, 53910740], [53911240, 53911320]]
ENST00000231909	[[53902683, 53902889], [53904008, 53904172], [53905258, 53905523], [53906410, 53906551], [53907058, 53907173], [53909974, 53910107], [53910646, 53910740], [53911240, 53911320]]	[[53902745, 53902889], [53904008, 53904172], [53905258, 53905523], [53906410, 53906551], [53907058, 53907173], [53909974, 53910107], [53910646, 53910674]]
ENST00000495993	[[53905184, 53905523], [53906410, 53906551], [53907058, 53907095]]	None
ENST00000498740	[[53911285, 53911414], [53911673, 53911778], [53912383, 53912494], [53913965, 53914136], [53915692, 53915884]]	[[53911285, 53911414], [53911673, 53911778], [53912383, 53912455]]
NM_022899	[[53901092, 53902889], [53904008, 53904172], [53905258, 53905523], [53906410, 53906551], [53907058, 53907154], [53908237, 53908391], [53909974, 53910107], [53910646, 53910740], [53911240, 53911414], [53911673, 53911778], [53912383, 53912494], [53913965, 53914136], [53916005, 53916229]]	[[53902745, 53902889], [53904008, 53904172], [53905258, 53905523], [53906410, 53906551], [53907058, 53907154], [53908237, 53908391], [53909974, 53910107], [53910646, 53910740], [53911240, 53911414], [53911673, 53911778], [53912383, 53912494], [53913965, 53914136], [53916005, 53916128]]

Promoter

Chrom	Start	End	Description
chr3	53915859	53915869	CAGE_peak_3_at_ACTR8_5end
chr3	53916169	53916187	CAGE_peak_1_at_ACTR8_5end
chr3	53916202	53916211	CAGE_peak_2_at_ACTR8_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I054355	54355894	54357200	1.02	[{'connected_gene': 'ACTR8', 'score': 4.55}, {'connected_gene': 'PIR51414', 'score': 0.13}, {'connected_gene': 'CACNA2D3', 'score': 0.07}]
chr3	GH03I053833	53833092	53834037	0.31	[{'connected_gene': 'ACTR8', 'score': 10.51}, {'connected_gene': 'CHDH', 'score': 0.39}, {'connected_gene': 'ENSG00000271916', 'score': 0.28}]
chr3	GH03I053830	53830810	53831596	0.2	[{'connected_gene': 'ACTR8', 'score': 10.49}, {'connected_gene': 'CHDH', 'score': 0.37}, {'connected_gene': 'ENSG00000271916', 'score': 0.29}]
chr3	GH03I053880	53880349	53882800	2.01	[{'connected_gene': 'ACTR8', 'score': 587.65}, {'connected_gene': 'ENSG00000271976', 'score': 5.27}]
chr3	GH03I053492	53492724	53495000	1.89	[{'connected_gene': 'CACNA1D', 'score': 550.1}, {'connected_gene': 'ACTR8', 'score': 5.11}, {'connected_gene': 'DCP1A', 'score': 4.35}, {'connected_gene': 'TKT', 'score': 4.31}, {'connected_gene': 'RFT1', 'score': 3.97}, {'connected_gene': 'RPS25P4', 'score': 0.37}, {'connected_gene': 'GC03P053524', 'score': 0.29}]
chr3	GH03I053890	53890436	53893203	2.03	[{'connected_gene': 'SELENOK', 'score': 556.65}, {'connected_gene': 'ACTR8', 'score': 37.25}, {'connected_gene': 'ENSG00000271976', 'score': 5.2}]
chr3	GH03I053140	53140402	53141800	1.43	[{'connected_gene': 'GLT8D1', 'score': 24.09}, {'connected_gene': 'RFT1', 'score': 22.26}, {'connected_gene': 'NISCH', 'score': 19.52}, {'connected_gene': 'PRKCD', 'score': 14.47}, {'connected_gene': 'ACTR8', 'score': 11.38}, {'connected_gene': 'NEK4', 'score': 11.24}, {'connected_gene': 'STIMATE', 'score': 8.07}, {'connected_gene': 'ITIH4', 'score': 7.34}, {'connected_gene': 'DCP1A', 'score': 6.17}, {'connected_gene': 'ITIH3', 'score': 4.87}, {'connected_gene': 'PBRM1', 'score': 1.98}, {'connected_gene': 'TKT', 'score': 1.23}, {'connected_gene': 'PIR59540', 'score': 0.77}]
chr3	GH03I053345	53345960	53348690	2.35	[{'connected_gene': 'DCP1A', 'score': 561.19}, {'connected_gene': 'NISCH', 'score': 37.22}, {'connected_gene': 'PBRM1', 'score': 23.95}, {'connected_gene': 'ENSG00000271976', 'score': 20.08}, {'connected_gene': 'RFT1', 'score': 13.15}, {'connected_gene': 'PHF7', 'score': 11.26}, {'connected_gene': 'ENSG00000212608', 'score': 11.08}, {'connected_gene': 'PRKCD', 'score': 10.97}, {'connected_gene': 'NEK4', 'score': 10.4}, {'connected_gene': 'ACTR8', 'score': 10.35}, {'connected_gene': 'GNL3', 'score': 10.14}, {'connected_gene': 'NT5DC2', 'score': 9.91}, {'connected_gene': 'TKT', 'score': 5.96}, {'connected_gene': 'STIMATE', 'score': 2.31}, {'connected_gene': 'SNORD38C', 'score': 0.39}, {'connected_gene': 'CACNA1D', 'score': 0.37}, {'connected_gene': 'GC03P053298', 'score': 0.25}]
chr3	GH03I053725	53725631	53725928	0.39	[{'connected_gene': 'IL17RB', 'score': 10.9}, {'connected_gene': 'ACTR8', 'score': 10.77}, {'connected_gene': 'PIR47826', 'score': 0.26}, {'connected_gene': 'GC03P053782', 'score': 0.22}, {'connected_gene': 'CACNA1D', 'score': 0.05}]
chr3	GH03I053765	53765823	53766882	0.52	[{'connected_gene': 'IL17RB', 'score': 8.92}, {'connected_gene': 'ACTR8', 'score': 4.48}, {'connected_gene': 'GC03P053782', 'score': 0.37}, {'connected_gene': 'PIR47826', 'score': 0.17}, {'connected_gene': 'CACNA1D', 'score': 0.05}]