PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000372071	[[88414313, 88414684], [88415911, 88416057], [88416951, 88416984], [88417788, 88417922], [88418240, 88418444], [88419053, 88419225], [88419651, 88419816], [88421037, 88421145], [88422008, 88422189], [88423415, 88423559], [88425469, 88426212]]	[[88414540, 88414684], [88415911, 88416057], [88416951, 88416984], [88417788, 88417922], [88418240, 88418444], [88419053, 88419225], [88419651, 88419816], [88421037, 88421145], [88422008, 88422189], [88423415, 88423559], [88425469, 88425508]]
ENST00000241891	[[88414373, 88414684], [88415911, 88416057], [88417788, 88417922], [88418240, 88418444], [88419053, 88419225], [88419651, 88419816], [88421037, 88421145], [88422008, 88422189], [88423415, 88423559], [88425469, 88426212]]	[[88414540, 88414684], [88415911, 88416057], [88417788, 88417922], [88418240, 88418444], [88419053, 88419225], [88419651, 88419816], [88421037, 88421145], [88422008, 88422189], [88423415, 88423559], [88425469, 88425508]]
ENST00000443292	[[88414373, 88414684], [88415911, 88416057], [88416951, 88416984], [88417788, 88417922], [88418240, 88418444], [88419053, 88419225], [88419651, 88419816], [88421037, 88421145], [88422008, 88422189], [88423415, 88423559], [88426550, 88426605]]	[[88414540, 88414684], [88415911, 88416057], [88416951, 88416984], [88417788, 88417922], [88418240, 88418444], [88419053, 88419225], [88419651, 88419816], [88421037, 88421145], [88422008, 88422189], [88423415, 88423559], [88426550, 88426605]]
NM_033282	[[88414313, 88414684], [88415911, 88416057], [88417788, 88417922], [88418240, 88418444], [88419053, 88419225], [88419651, 88419816], [88421037, 88421145], [88422008, 88422189], [88423415, 88423559], [88425469, 88426217]]	[[88414540, 88414684], [88415911, 88416057], [88417788, 88417922], [88418240, 88418444], [88419053, 88419225], [88419651, 88419816], [88421037, 88421145], [88422008, 88422189], [88423415, 88423559], [88425469, 88425508]]
NM_001030015	[[88414313, 88414684], [88415911, 88416057], [88416951, 88416984], [88417788, 88417922], [88418240, 88418444], [88419053, 88419225], [88419651, 88419816], [88421037, 88421145], [88422008, 88422189], [88423415, 88423559], [88425469, 88426217]]	[[88414540, 88414684], [88415911, 88416057], [88416951, 88416984], [88417788, 88417922], [88418240, 88418444], [88419053, 88419225], [88419651, 88419816], [88421037, 88421145], [88422008, 88422189], [88423415, 88423559], [88425469, 88425508]]

Promoter

Chrom	Start	End	Description
chr10	88414298	88414311	CAGE_peak_1_at_OPN4_5end
chr10	88414338	88414356	CAGE_peak_2_at_OPN4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I086634	86634846	86636324	0.38	[{'connected_gene': 'OPN4', 'score': 16.39}, {'connected_gene': 'ENSG00000272631', 'score': 6.35}, {'connected_gene': 'RPL7AP8', 'score': 0.77}, {'connected_gene': 'GC10P086656', 'score': 0.37}, {'connected_gene': 'GC10P086655', 'score': 0.37}]
chr10	GH10I086648	86648313	86650543	1	[{'connected_gene': 'OPN4', 'score': 14.03}, {'connected_gene': 'ENSG00000272631', 'score': 7.11}, {'connected_gene': 'GC10P086656', 'score': 0.44}, {'connected_gene': 'GC10P086655', 'score': 0.44}, {'connected_gene': 'RPL7AP8', 'score': 0.37}]
chr10	GH10I086654	86654498	86654557	0.76	[{'connected_gene': 'OPN4', 'score': 578.74}, {'connected_gene': 'GC10P086656', 'score': 550.77}, {'connected_gene': 'GC10P086655', 'score': 550.77}, {'connected_gene': 'RPL7AP8', 'score': 0.34}]
chr10	GH10I086597	86597402	86599227	0.43	[{'connected_gene': 'OPN4', 'score': 18.04}, {'connected_gene': 'ENSG00000272631', 'score': 6.49}, {'connected_gene': 'GC10P086567', 'score': 0.29}, {'connected_gene': 'RPL7AP8', 'score': 0.29}]
chr10	GH10I086602	86602629	86603902	0.66	[{'connected_gene': 'OPN4', 'score': 9.78}, {'connected_gene': 'RPL7AP8', 'score': 0.31}, {'connected_gene': 'GC10P086567', 'score': 0.28}]
chr10	GH10I086599	86599864	86600053	0.52	[{'connected_gene': 'OPN4', 'score': 23.21}, {'connected_gene': 'GC10P086567', 'score': 0.29}, {'connected_gene': 'RPL7AP8', 'score': 0.29}]
chr10	GH10I086644	86644425	86645551	0.73	[{'connected_gene': 'OPN4', 'score': 27.58}, {'connected_gene': 'ENSG00000272631', 'score': 7.1}, {'connected_gene': 'GC10P086656', 'score': 0.44}, {'connected_gene': 'GC10P086655', 'score': 0.44}, {'connected_gene': 'RPL7AP8', 'score': 0.39}]
chr10	GH10I086600	86600086	86600914	0.56	[{'connected_gene': 'OPN4', 'score': 9.13}, {'connected_gene': 'ENSG00000272631', 'score': 6.49}, {'connected_gene': 'GC10P086567', 'score': 0.29}, {'connected_gene': 'RPL7AP8', 'score': 0.29}]
chr10	GH10I086676	86676445	86678066	0.43	[{'connected_gene': 'OPN4', 'score': 12.0}, {'connected_gene': 'LDB3', 'score': 4.63}, {'connected_gene': 'GC10M086714', 'score': 0.28}]
chr10	GH10I086661	86661406	86662095	0.58	[{'connected_gene': 'OPN4', 'score': 9.6}, {'connected_gene': 'LOC105378409', 'score': 0.77}]
chr10	GH10I086656	86656964	86658396	0.31	[{'connected_gene': 'MMRN2', 'score': 10.21}, {'connected_gene': 'ADIRF', 'score': 10.21}, {'connected_gene': 'SNCG', 'score': 10.2}, {'connected_gene': 'OPN4', 'score': 9.52}, {'connected_gene': 'ENSG00000272631', 'score': 7.12}, {'connected_gene': 'LOC105378409', 'score': 0.44}]
chr10	GH10I087081	87081402	87085640	1.01	[{'connected_gene': 'MMRN2', 'score': 10.86}, {'connected_gene': 'ADIRF', 'score': 10.86}, {'connected_gene': 'SNCG', 'score': 10.86}, {'connected_gene': 'FAM35A', 'score': 9.83}, {'connected_gene': 'NUTM2A-AS1', 'score': 8.11}, {'connected_gene': 'OPN4', 'score': 7.78}, {'connected_gene': 'NUTM2D', 'score': 6.84}, {'connected_gene': 'GLUD1', 'score': 0.39}, {'connected_gene': 'GC10M087058', 'score': 0.34}]
chr10	GH10I086683	86683114	86689569	1.56	[{'connected_gene': 'BMPR1A', 'score': 8.09}, {'connected_gene': 'OPN4', 'score': 5.78}, {'connected_gene': 'LDB3', 'score': 0.37}, {'connected_gene': 'GC10M086714', 'score': 0.31}]
chr10	GH10I086795	86795004	86795948	0.92	[{'connected_gene': 'BMPR1A', 'score': 29.51}, {'connected_gene': 'OPN4', 'score': 6.75}, {'connected_gene': 'GC10M086786', 'score': 0.44}, {'connected_gene': 'RPAP2P1', 'score': 0.21}]
chr10	GH10I087107	87107092	87107471	0.26	[{'connected_gene': 'FAM35A', 'score': 11.25}, {'connected_gene': 'NUTM2A-AS1', 'score': 10.86}, {'connected_gene': 'OPN4', 'score': 7.62}, {'connected_gene': 'ENSG00000237280', 'score': 0.44}, {'connected_gene': 'GLUD1', 'score': 0.39}]
chr10	GH10I087090	87090809	87096982	2.31	[{'connected_gene': 'FAM35A', 'score': 570.9}, {'connected_gene': 'GLUD1', 'score': 550.77}, {'connected_gene': 'NUTM2A-AS1', 'score': 36.57}, {'connected_gene': 'ENSG00000272631', 'score': 34.41}, {'connected_gene': 'WAPL', 'score': 24.98}, {'connected_gene': 'BMPR1A', 'score': 22.65}, {'connected_gene': 'CFL1P1', 'score': 20.56}, {'connected_gene': 'RPL11P3', 'score': 11.19}, {'connected_gene': 'ENSG00000227896', 'score': 10.93}, {'connected_gene': 'BMS1P3', 'score': 10.43}, {'connected_gene': 'ADIRF-AS1', 'score': 9.84}, {'connected_gene': 'OPN4', 'score': 7.62}, {'connected_gene': 'NUTM2A', 'score': 7.49}, {'connected_gene': 'GC10M087058', 'score': 0.29}]
chr10	GH10I086631	86631869	86632779	0.89	[{'connected_gene': 'RPL7AP8', 'score': 550.77}, {'connected_gene': 'OPN4', 'score': 27.02}, {'connected_gene': 'GC10P086656', 'score': 0.34}, {'connected_gene': 'GC10P086655', 'score': 0.34}]
chr10	GH10I086630	86630174	86630698	0.2	[{'connected_gene': 'RPL7AP8', 'score': 550.77}, {'connected_gene': 'OPN4', 'score': 26.63}, {'connected_gene': 'GC10P086567', 'score': 0.21}]
chr10	GH10I086389	86389201	86390713	0.87	[{'connected_gene': 'WAPL', 'score': 5.51}, {'connected_gene': 'OPN4', 'score': 4.43}, {'connected_gene': 'LDB3', 'score': 4.28}, {'connected_gene': 'GC10M086380', 'score': 0.44}, {'connected_gene': 'GC10P086443', 'score': 0.23}]
chr10	GH10I086662	86662842	86676184	1.79	[{'connected_gene': 'LDB3', 'score': 565.18}, {'connected_gene': 'OPN4', 'score': 30.01}, {'connected_gene': 'ENSG00000272631', 'score': 7.2}, {'connected_gene': 'LOC105378409', 'score': 0.77}, {'connected_gene': 'GC10M086714', 'score': 0.25}]
chr10	GH10I086414	86414757	86416222	0.66	[{'connected_gene': 'LDB3', 'score': 7.18}, {'connected_gene': 'OPN4', 'score': 5.96}, {'connected_gene': 'GC10P086443', 'score': 0.31}, {'connected_gene': 'GC10M086380', 'score': 0.29}]
chr10	GH10I086680	86680644	86681866	0.58	[{'connected_gene': 'LDB3', 'score': 15.22}, {'connected_gene': 'OPN4', 'score': 11.6}, {'connected_gene': 'ENSG00000272631', 'score': 7.24}, {'connected_gene': 'GC10M086714', 'score': 0.29}]
chr10	GH10I086693	86693347	86694664	0.84	[{'connected_gene': 'LDB3', 'score': 12.97}, {'connected_gene': 'OPN4', 'score': 11.78}, {'connected_gene': 'GC10M086714', 'score': 0.34}]
chr10	GH10I086436	86436572	86443907	1.34	[{'connected_gene': 'RNU6-780P', 'score': 11.72}, {'connected_gene': 'ENSG00000227896', 'score': 11.46}, {'connected_gene': 'WAPL', 'score': 11.46}, {'connected_gene': 'LDB3', 'score': 6.39}, {'connected_gene': 'OPN4', 'score': 5.53}, {'connected_gene': 'BMPR1A', 'score': 4.71}, {'connected_gene': 'GC10P086443', 'score': 0.77}, {'connected_gene': 'GC10M086380', 'score': 0.22}]
chr10	GH10I086399	86399444	86403362	1.75	[{'connected_gene': 'ENSG00000227896', 'score': 19.6}, {'connected_gene': 'ENSG00000272631', 'score': 18.35}, {'connected_gene': 'GRID1', 'score': 17.14}, {'connected_gene': 'WAPL', 'score': 4.49}, {'connected_gene': 'LDB3', 'score': 4.18}, {'connected_gene': 'OPN4', 'score': 2.69}, {'connected_gene': 'GC10M086380', 'score': 0.34}, {'connected_gene': 'GC10P086443', 'score': 0.26}]
chr10	GH10I086585	86585123	86585870	1.04	[{'connected_gene': 'ENSG00000227896', 'score': 11.18}, {'connected_gene': 'WAPL', 'score': 11.18}, {'connected_gene': 'RNU6-780P', 'score': 10.99}, {'connected_gene': 'MIR346', 'score': 9.29}, {'connected_gene': 'OPN4', 'score': 6.3}, {'connected_gene': 'GC10P086567', 'score': 0.37}, {'connected_gene': 'RPL7AP8', 'score': 0.25}]
chr10	GH10I086309	86309579	86320829	0.75	[{'connected_gene': 'ENSG00000227896', 'score': 16.61}, {'connected_gene': 'ADIRF-AS1', 'score': 12.22}, {'connected_gene': 'GRID1', 'score': 11.92}, {'connected_gene': 'MIR346', 'score': 11.5}, {'connected_gene': 'WAPL', 'score': 11.36}, {'connected_gene': 'MMRN2', 'score': 5.39}, {'connected_gene': 'LDB3', 'score': 4.84}, {'connected_gene': 'OPN4', 'score': 4.44}]