PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000309575	[[142838172, 142839383], [142839485, 142841800]]	[[142839658, 142841251]]
NM_004267	[[142838617, 142839383], [142839485, 142842856]]	[[142839658, 142841251]]

Promoter

Chrom	Start	End	Description
chr3	142838091	142838109	CAGE_peak_6_at_CHST2_5end
chr3	142838563	142838574	CAGE_peak_5_at_CHST2_5end
chr3	142838591	142838621	CAGE_peak_2_at_CHST2_5end
chr3	142838629	142838697	CAGE_peak_1_at_CHST2_5end
chr3	142838741	142838764	CAGE_peak_3_at_CHST2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I143307	143307600	143308200	1.4	[{'connected_gene': 'CHST2', 'score': 1.34}, {'connected_gene': 'ENSG00000240888', 'score': 0.44}, {'connected_gene': 'PBX2P1', 'score': 0.12}, {'connected_gene': 'SLC9A9', 'score': 0.03}]
chr3	GH03I143479	143479607	143481111	0.2	[{'connected_gene': 'CHST2', 'score': 13.17}, {'connected_gene': 'GC03M143504', 'score': 0.34}, {'connected_gene': 'GC03M143367', 'score': 0.34}, {'connected_gene': 'SLC9A9', 'score': 0.05}]
chr3	GH03I143118	143118593	143124105	1.98	[{'connected_gene': 'CHST2', 'score': 559.26}, {'connected_gene': 'U2SURP', 'score': 31.51}, {'connected_gene': 'XRN1', 'score': 27.46}, {'connected_gene': 'ATR', 'score': 23.82}, {'connected_gene': 'PBX2P1', 'score': 13.24}, {'connected_gene': 'GK5', 'score': 10.33}, {'connected_gene': 'ENSG00000241679', 'score': 9.2}, {'connected_gene': 'LOC105374137', 'score': 0.39}]
chr3	GH03I143446	143446189	143447154	0.2	[{'connected_gene': 'CHST2', 'score': 10.88}, {'connected_gene': 'GC03M143367', 'score': 0.44}, {'connected_gene': 'SLC9A9-AS2', 'score': 0.2}, {'connected_gene': 'SLC9A9', 'score': 0.05}]
chr3	GH03I143507	143507392	143509402	0.2	[{'connected_gene': 'CHST2', 'score': 9.6}, {'connected_gene': 'GAPDHP47', 'score': 0.77}, {'connected_gene': 'GC03P143515', 'score': 0.44}, {'connected_gene': 'SLC9A9', 'score': 0.05}]
chr3	GH03I143524	143524646	143530365	0.74	[{'connected_gene': 'ATR', 'score': 9.74}, {'connected_gene': 'CHST2', 'score': 9.61}, {'connected_gene': 'GC03M143519', 'score': 0.77}, {'connected_gene': 'GC03P143544', 'score': 0.37}, {'connected_gene': 'SLC9A9', 'score': 0.05}]
chr3	GH03I143442	143442454	143445873	1.57	[{'connected_gene': 'U2SURP', 'score': 22.76}, {'connected_gene': 'ATR', 'score': 12.83}, {'connected_gene': 'XRN1', 'score': 10.16}, {'connected_gene': 'CHST2', 'score': 9.59}, {'connected_gene': 'GC03M143367', 'score': 0.39}, {'connected_gene': 'SLC9A9-AS2', 'score': 0.21}, {'connected_gene': 'SLC9A9', 'score': 0.05}]
chr3	GH03I143978	143978756	143980826	0.4	[{'connected_gene': 'C3orf58', 'score': 9.52}, {'connected_gene': 'CHST2', 'score': 5.86}, {'connected_gene': 'RNA5SP144', 'score': 0.08}]
chr3	GH03I143970	143970401	143978519	2.56	[{'connected_gene': 'C3orf58', 'score': 563.97}, {'connected_gene': 'PBX2P1', 'score': 30.36}, {'connected_gene': 'CHST2', 'score': 7.01}, {'connected_gene': 'RNA5SP144', 'score': 0.08}]
chr3	GH03I143126	143126033	143126055	0.22	[{'connected_gene': 'SLC9A9-AS1', 'score': 10.15}, {'connected_gene': 'CHST2', 'score': 4.59}, {'connected_gene': 'PAQR9', 'score': 2.24}, {'connected_gene': 'GC03P143130', 'score': 0.77}, {'connected_gene': 'ENSG00000241679', 'score': 0.77}, {'connected_gene': 'LOC105374137', 'score': 0.44}]
chr3	GH03I143435	143435659	143437566	0.4	[{'connected_gene': 'SLC9A9-AS1', 'score': 9.89}, {'connected_gene': 'CHST2', 'score': 6.8}, {'connected_gene': 'GC03M143367', 'score': 0.34}, {'connected_gene': 'SLC9A9-AS2', 'score': 0.22}, {'connected_gene': 'SLC9A9', 'score': 0.05}]
chr3	GH03I143139	143139413	143140349	0.43	[{'connected_gene': 'SLC9A9-AS1', 'score': 9.65}, {'connected_gene': 'CHST2', 'score': 9.45}, {'connected_gene': 'LOC105374137', 'score': 0.44}, {'connected_gene': 'PBX2P1', 'score': 0.28}]
chr3	GH03I143134	143134669	143136005	0.83	[{'connected_gene': 'SLC9A9-AS1', 'score': 9.88}, {'connected_gene': 'CHST2', 'score': 9.71}, {'connected_gene': 'LOC105374137', 'score': 0.77}, {'connected_gene': 'PBX2P1', 'score': 0.26}]
chr3	GH03I143518	143518001	143518400	0.5	[{'connected_gene': 'ST13P15', 'score': 550.77}, {'connected_gene': 'CHST2', 'score': 7.4}, {'connected_gene': 'GC03P143515', 'score': 0.77}, {'connected_gene': 'SLC9A9', 'score': 0.06}]
chr3	GH03I143128	143128719	143128868	0.2	[{'connected_gene': 'GC03P143130', 'score': 550.77}, {'connected_gene': 'SLC9A9-AS1', 'score': 10.26}, {'connected_gene': 'CHST2', 'score': 8.97}, {'connected_gene': 'LOC105374137', 'score': 0.77}, {'connected_gene': 'ENSG00000241679', 'score': 0.44}]