PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000538629	[[77656338, 77656552], [77684660, 77684738], [77711343, 77711442], [77712364, 77712473], [77714598, 77714727], [77717624, 77717784], [77745756, 77745857], [77755066, 77755185], [77771326, 77776562]]	[[77656495, 77656552], [77684660, 77684738], [77711343, 77711442], [77712364, 77712473], [77714598, 77714727], [77717624, 77717784], [77745756, 77745857], [77755066, 77755185], [77771326, 77771491]]
ENST00000339292	[[77656406, 77656552], [77684660, 77684738], [77711343, 77711442], [77712364, 77712473], [77714598, 77714727], [77717624, 77717784], [77745756, 77745857], [77755067, 77755185], [77771326, 77774894]]	None
ENST00000509998	[[77656434, 77656552], [77684660, 77684738], [77711343, 77711442], [77712364, 77712473], [77714598, 77714727], [77745756, 77745857], [77755067, 77755185], [77771326, 77771849]]	None
ENST00000508822	[[77656434, 77656552], [77711343, 77711442], [77712364, 77712473], [77714598, 77714727], [77717624, 77717784], [77745756, 77745857], [77755067, 77755185], [77771326, 77771849]]	None
ENST00000320280	[[77712426, 77712473], [77714598, 77714727], [77717624, 77717784], [77755067, 77755185], [77771326, 77774638]]	None
ENST00000511551	[[77656451, 77656552], [77666443, 77666629], [77684660, 77684738], [77711343, 77711442], [77712364, 77712459]]	None
ENST00000510030	[[77656628, 77656880], [77684660, 77684738], [77711343, 77711442], [77712364, 77712412]]	None
ENST00000506858	[[77753615, 77753774], [77755067, 77755185], [77771326, 77772652]]	None
NM_001290229	[[77656326, 77656552], [77711343, 77711442], [77712364, 77712473], [77714598, 77714727], [77717624, 77717784], [77745756, 77745852], [77745854, 77745857], [77755067, 77755185], [77771326, 77776562]]	[[77656495, 77656552], [77711343, 77711442], [77712364, 77712473], [77714598, 77714727], [77717624, 77717784], [77745756, 77745852], [77745854, 77745857], [77755067, 77755185], [77771326, 77771491]]
NR_110885	[[77656326, 77656552], [77684660, 77684738], [77711343, 77711442], [77712364, 77712473], [77714598, 77714727], [77745756, 77745857], [77755067, 77755185], [77771326, 77776562]]	None
NM_004866	[[77656326, 77656552], [77684660, 77684738], [77711343, 77711442], [77712364, 77712473], [77714598, 77714727], [77717624, 77717784], [77745756, 77745852], [77745854, 77745857], [77755067, 77755185], [77771326, 77776562]]	[[77656495, 77656552], [77684660, 77684738], [77711343, 77711442], [77712364, 77712473], [77714598, 77714727], [77717624, 77717784], [77745756, 77745852], [77745854, 77745857], [77755067, 77755185], [77771326, 77771491]]

Promoter

Chrom	Start	End	Description
chr5	77655924	77655948	CAGE_peak_7_at_SCAMP1_5end
chr5	77655955	77655973	CAGE_peak_9_at_SCAMP1_5end
chr5	77656342	77656362	CAGE_peak_2_at_SCAMP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I078539	78539601	78542443	1.18	[{'connected_gene': 'SCAMP1', 'score': 5.26}, {'connected_gene': 'AP3B1', 'score': 2.65}, {'connected_gene': 'ARSB', 'score': 1.71}, {'connected_gene': 'PIR51536', 'score': 0.29}, {'connected_gene': 'GC05M078588', 'score': 0.25}, {'connected_gene': 'LHFPL2', 'score': 0.07}]
chr5	GH05I078359	78359054	78362338	2.07	[{'connected_gene': 'SCAMP1', 'score': 573.06}, {'connected_gene': 'SCAMP1-AS1', 'score': 560.0}, {'connected_gene': 'PIR62844', 'score': 550.77}, {'connected_gene': 'JMY', 'score': 14.1}, {'connected_gene': 'RPL7P23', 'score': 13.39}, {'connected_gene': 'RPS3AP20', 'score': 11.99}, {'connected_gene': 'DMGDH', 'score': 4.67}, {'connected_gene': 'PIR51536', 'score': 0.11}]
chr5	GH05I078495	78495313	78499825	1.25	[{'connected_gene': 'SCAMP1', 'score': 6.93}, {'connected_gene': 'SCAMP1-AS1', 'score': 6.01}, {'connected_gene': 'PIR51536', 'score': 0.39}, {'connected_gene': 'LHFPL2', 'score': 0.06}]
chr5	GH05I078550	78550739	78551560	0.58	[{'connected_gene': 'SCAMP1', 'score': 6.0}, {'connected_gene': 'GC05M078588', 'score': 0.28}, {'connected_gene': 'PIR51536', 'score': 0.26}, {'connected_gene': 'LHFPL2', 'score': 0.08}]
chr5	GH05I078566	78566106	78570115	1.12	[{'connected_gene': 'SCAMP1', 'score': 6.74}, {'connected_gene': 'GC05M078588', 'score': 0.34}, {'connected_gene': 'PIR51536', 'score': 0.22}, {'connected_gene': 'LHFPL2', 'score': 0.08}]
chr5	GH05I078573	78573201	78575291	1.22	[{'connected_gene': 'SCAMP1', 'score': 5.86}, {'connected_gene': 'GC05M078588', 'score': 0.37}, {'connected_gene': 'PIR51536', 'score': 0.21}, {'connected_gene': 'LHFPL2', 'score': 0.08}]
chr5	GH05I078552	78552504	78556351	0.54	[{'connected_gene': 'SCAMP1', 'score': 5.77}, {'connected_gene': 'GC05M078588', 'score': 0.28}, {'connected_gene': 'PIR51536', 'score': 0.26}, {'connected_gene': 'LHFPL2', 'score': 0.08}]
chr5	GH05I078016	78016869	78017539	1.02	[{'connected_gene': 'SCAMP1', 'score': 16.98}, {'connected_gene': 'TRQ-TTG7-1', 'score': 0.44}, {'connected_gene': 'ENSG00000253572', 'score': 0.19}, {'connected_gene': 'AP3B1', 'score': 0.06}]
chr5	GH05I078482	78482991	78485814	1.62	[{'connected_gene': 'SCAMP1-AS1', 'score': 8.33}, {'connected_gene': 'SCAMP1', 'score': 8.03}, {'connected_gene': 'AP3B1', 'score': 2.94}, {'connected_gene': 'PIR51536', 'score': 0.31}, {'connected_gene': 'LHFPL2', 'score': 0.06}]
chr5	GH05I078489	78489874	78490797	0.43	[{'connected_gene': 'SCAMP1-AS1', 'score': 8.27}, {'connected_gene': 'SCAMP1', 'score': 6.83}, {'connected_gene': 'PIR51536', 'score': 0.37}, {'connected_gene': 'LHFPL2', 'score': 0.06}]
chr5	GH05I078604	78604177	78607531	0.72	[{'connected_gene': 'SCAMP1-AS1', 'score': 4.59}, {'connected_gene': 'SCAMP1', 'score': 4.47}, {'connected_gene': 'GC05M078588', 'score': 0.37}, {'connected_gene': 'GC05M078630', 'score': 0.29}, {'connected_gene': 'LHFPL2', 'score': 0.1}]
chr5	GH05I078517	78517801	78520523	1.61	[{'connected_gene': 'SCAMP1-AS1', 'score': 6.9}, {'connected_gene': 'LHFPL2', 'score': 6.34}, {'connected_gene': 'SCAMP1', 'score': 4.89}, {'connected_gene': 'AP3B1', 'score': 2.07}, {'connected_gene': 'ARSB', 'score': 1.62}, {'connected_gene': 'PIR51536', 'score': 0.44}, {'connected_gene': 'GC05M078588', 'score': 0.19}]
chr5	GH05I077645	77645011	77645571	1.56	[{'connected_gene': 'RPL7P23', 'score': 27.18}, {'connected_gene': 'SCAMP1', 'score': 16.95}, {'connected_gene': 'WDR41', 'score': 11.88}, {'connected_gene': 'AP3B1', 'score': 11.69}, {'connected_gene': 'AGGF1', 'score': 10.02}, {'connected_gene': 'OTP', 'score': 0.44}, {'connected_gene': 'GC05M077675', 'score': 0.29}]
chr5	GH05I078533	78533402	78535680	1.43	[{'connected_gene': 'LHFPL2', 'score': 9.9}, {'connected_gene': 'SCAMP1', 'score': 5.62}, {'connected_gene': 'SCAMP1-AS1', 'score': 4.71}, {'connected_gene': 'AP3B1', 'score': 2.57}, {'connected_gene': 'ARSB', 'score': 1.27}, {'connected_gene': 'PIR51536', 'score': 0.34}, {'connected_gene': 'GC05M078588', 'score': 0.22}]
chr5	GH05I078487	78487619	78488927	0.2	[{'connected_gene': 'LHFPL2', 'score': 8.92}, {'connected_gene': 'SCAMP1', 'score': 7.96}, {'connected_gene': 'SCAMP1-AS1', 'score': 5.54}, {'connected_gene': 'PIR51536', 'score': 0.34}]
chr5	GH05I078590	78590528	78599283	1.69	[{'connected_gene': 'LHFPL2', 'score': 13.72}, {'connected_gene': 'SCAMP1', 'score': 4.72}, {'connected_gene': 'GC05M078588', 'score': 0.44}, {'connected_gene': 'GC05M078630', 'score': 0.26}]
chr5	GH05I078543	78543434	78549860	1.62	[{'connected_gene': 'LHFPL2', 'score': 13.22}, {'connected_gene': 'SCAMP1', 'score': 5.8}, {'connected_gene': 'PIR51536', 'score': 0.28}, {'connected_gene': 'GC05M078588', 'score': 0.26}]
chr5	GH05I078585	78585479	78588931	1.56	[{'connected_gene': 'LHFPL2', 'score': 13.39}, {'connected_gene': 'SCAMP1', 'score': 5.69}, {'connected_gene': 'GC05M078588', 'score': 0.77}, {'connected_gene': 'PIR51536', 'score': 0.18}]
chr5	GH05I078532	78532679	78533369	0.46	[{'connected_gene': 'LHFPL2', 'score': 9.9}, {'connected_gene': 'SCAMP1', 'score': 5.43}, {'connected_gene': 'PIR51536', 'score': 0.34}, {'connected_gene': 'GC05M078588', 'score': 0.22}]
chr5	GH05I078599	78599656	78602885	1.16	[{'connected_gene': 'LHFPL2', 'score': 11.05}, {'connected_gene': 'SCAMP1', 'score': 4.84}, {'connected_gene': 'GC05M078588', 'score': 0.39}, {'connected_gene': 'GC05M078630', 'score': 0.28}]
chr5	GH05I078609	78609851	78612032	1.04	[{'connected_gene': 'LHFPL2', 'score': 9.77}, {'connected_gene': 'SCAMP1', 'score': 4.41}, {'connected_gene': 'GC05M078588', 'score': 0.34}, {'connected_gene': 'GC05M078630', 'score': 0.31}]
chr5	GH05I078522	78522419	78531399	1.72	[{'connected_gene': 'LHFPL2', 'score': 10.0}, {'connected_gene': 'SCAMP1-AS1', 'score': 5.74}, {'connected_gene': 'SCAMP1', 'score': 5.47}, {'connected_gene': 'AP3B1', 'score': 2.88}, {'connected_gene': 'ARSB', 'score': 1.68}, {'connected_gene': 'PIR51536', 'score': 0.37}, {'connected_gene': 'GC05M078588', 'score': 0.21}]
chr5	GH05I078491	78491237	78494291	0.38	[{'connected_gene': 'LHFPL2', 'score': 8.76}, {'connected_gene': 'SCAMP1-AS1', 'score': 8.34}, {'connected_gene': 'SCAMP1', 'score': 6.74}, {'connected_gene': 'PIR51536', 'score': 0.37}]
chr5	GH05I078406	78406437	78406586	0.43	[{'connected_gene': 'LHFPL2', 'score': 9.91}, {'connected_gene': 'SCAMP1-AS1', 'score': 6.2}, {'connected_gene': 'SCAMP1', 'score': 0.25}, {'connected_gene': 'PIR51536', 'score': 0.15}]
chr5	GH05I078500	78500589	78502872	0.89	[{'connected_gene': 'LHFPL2', 'score': 9.13}, {'connected_gene': 'SCAMP1-AS1', 'score': 8.34}, {'connected_gene': 'SCAMP1', 'score': 6.52}, {'connected_gene': 'PIR51536', 'score': 0.44}]
chr5	GH05I078503	78503802	78512253	1.7	[{'connected_gene': 'PIR51536', 'score': 550.77}, {'connected_gene': 'TBCA', 'score': 10.5}, {'connected_gene': 'LHFPL2', 'score': 9.34}, {'connected_gene': 'SCAMP1-AS1', 'score': 8.71}, {'connected_gene': 'SCAMP1', 'score': 7.18}, {'connected_gene': 'ARSB', 'score': 2.98}, {'connected_gene': 'AP3B1', 'score': 2.85}]