PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000369085	[[121410881, 121411367], [121429362, 121429689], [121431766, 121432168], [121435975, 121437331]]	[[121411187, 121411367], [121429362, 121429689], [121431766, 121432168], [121435975, 121436794]]
ENST00000450186	[[121416121, 121416188], [121416971, 121417080], [121429362, 121429689], [121431766, 121432168], [121435978, 121436219]]	[[121417074, 121417080], [121429362, 121429689], [121431766, 121432168], [121435978, 121436219]]
NM_004281	[[121410881, 121411367], [121429362, 121429689], [121431766, 121432168], [121435975, 121437331]]	[[121411187, 121411367], [121429362, 121429689], [121431766, 121432168], [121435975, 121436794]]

Promoter

Chrom	Start	End	Description
chr10	121410884	121410902	CAGE_peak_1_at_BAG3_5end
chr10	121410918	121410941	CAGE_peak_3_at_BAG3_5end
chr10	121410963	121410976	CAGE_peak_4_at_BAG3_5end
chr10	121411047	121411059	CAGE_peak_5_at_BAG3_5end
chr10	121411071	121411091	CAGE_peak_2_at_BAG3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I119663	119663065	119665050	1.17	[{'connected_gene': 'BAG3', 'score': 10.68}, {'connected_gene': 'TXNP1', 'score': 0.37}]
chr10	GH10I119674	119674847	119676712	0.51	[{'connected_gene': 'BAG3', 'score': 11.03}, {'connected_gene': 'TXNP1', 'score': 0.44}]
chr10	GH10I119661	119661051	119662265	0.31	[{'connected_gene': 'BAG3', 'score': 9.58}, {'connected_gene': 'TXNP1', 'score': 0.34}]
chr10	GH10I119675	119673349	119673498	0.51	[{'connected_gene': 'BAG3', 'score': 4.48}, {'connected_gene': 'TXNP1', 'score': 0.39}]
chr10	GH10I119673	119673799	119674616	0.31	[{'connected_gene': 'BAG3', 'score': 15.08}, {'connected_gene': 'TXNP1', 'score': 0.44}]
chr10	GH10I119686	119686036	119689798	1.43	[{'connected_gene': 'BAG3', 'score': 23.35}, {'connected_gene': 'TIAL1', 'score': 17.07}, {'connected_gene': 'SEC23IP', 'score': 16.98}, {'connected_gene': 'RPL17P36', 'score': 16.11}, {'connected_gene': 'RPL21P16', 'score': 10.47}, {'connected_gene': 'TXNP1', 'score': 8.62}, {'connected_gene': 'INPP5F', 'score': 8.18}]
chr10	GH10I119650	119650584	119660678	2.72	[{'connected_gene': 'BAG3', 'score': 568.34}, {'connected_gene': 'TIAL1', 'score': 21.86}, {'connected_gene': 'SEC23IP', 'score': 20.53}, {'connected_gene': 'INPP5F', 'score': 11.7}, {'connected_gene': 'MCMBP', 'score': 10.82}, {'connected_gene': 'GRK5', 'score': 1.18}, {'connected_gene': 'TXNP1', 'score': 0.31}]
chr10	GH10I119665	119665440	119671883	1.34	[{'connected_gene': 'BAG3', 'score': 14.94}, {'connected_gene': 'INPP5F', 'score': 7.83}, {'connected_gene': 'TXNP1', 'score': 0.37}]
chr10	GH10I119643	119643989	119644138	0.46	[{'connected_gene': 'TIAL1', 'score': 11.56}, {'connected_gene': 'BAG3', 'score': 0.44}, {'connected_gene': 'RPS8P4', 'score': 0.44}]
chr10	GH10I119642	119642649	119642798	0.51	[{'connected_gene': 'TIAL1', 'score': 11.56}, {'connected_gene': 'RPS8P4', 'score': 0.77}, {'connected_gene': 'BAG3', 'score': 0.44}]
chr10	GH10I119640	119640549	119641554	0.63	[{'connected_gene': 'TIAL1', 'score': 11.57}, {'connected_gene': 'INPP5F', 'score': 6.5}, {'connected_gene': 'RPS8P4', 'score': 0.77}, {'connected_gene': 'BAG3', 'score': 0.39}]
chr10	GH10I119703	119703518	119707638	1.35	[{'connected_gene': 'INPP5F', 'score': 550.77}, {'connected_gene': 'BAG3', 'score': 6.42}, {'connected_gene': 'GC10P119719', 'score': 0.39}]
chr10	GH10I119723	119723701	119727213	2.22	[{'connected_gene': 'INPP5F', 'score': 562.33}, {'connected_gene': 'TXNP1', 'score': 6.11}, {'connected_gene': 'BAG3', 'score': 6.01}, {'connected_gene': 'GC10P119719', 'score': 0.44}, {'connected_gene': 'GC10P119759', 'score': 0.29}]
chr10	GH10I119848	119848125	119851265	0.38	[{'connected_gene': 'INPP5F', 'score': 20.17}, {'connected_gene': 'MCMBP', 'score': 17.99}, {'connected_gene': 'SEC23IP', 'score': 10.92}, {'connected_gene': 'BAG3', 'score': 10.5}, {'connected_gene': 'EIF3A', 'score': 9.16}, {'connected_gene': 'ENSG00000222588', 'score': 9.16}, {'connected_gene': 'SNORA19', 'score': 9.16}, {'connected_gene': 'ENSG00000282413', 'score': 0.29}]
chr10	GH10I119677	119677923	119683217	1.26	[{'connected_gene': 'INPP5F', 'score': 18.97}, {'connected_gene': 'TIAL1', 'score': 17.51}, {'connected_gene': 'SEC23IP', 'score': 15.95}, {'connected_gene': 'MCMBP', 'score': 13.03}, {'connected_gene': 'RPL17P36', 'score': 10.74}, {'connected_gene': 'TXNP1', 'score': 8.67}, {'connected_gene': 'BAG3', 'score': 7.94}]
chr10	GH10I119859	119859509	119859658	0.59	[{'connected_gene': 'SEC23IP', 'score': 11.54}, {'connected_gene': 'INPP5F', 'score': 10.98}, {'connected_gene': 'BAG3', 'score': 10.37}, {'connected_gene': 'MCMBP', 'score': 0.29}, {'connected_gene': 'ENSG00000282413', 'score': 0.26}]
chr10	GH10I119618	119618469	119621164	0.84	[{'connected_gene': 'RAD1P1', 'score': 550.77}, {'connected_gene': 'GC10P119622', 'score': 550.77}, {'connected_gene': 'INPP5F', 'score': 18.57}, {'connected_gene': 'BAG3', 'score': 17.51}, {'connected_gene': 'TIAL1', 'score': 12.45}, {'connected_gene': 'GC10P119612', 'score': 0.44}]