PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370693	[[57037123, 57037608], [57046829, 57046939], [57048575, 57054631]]	[[57037495, 57037608], [57046829, 57046939], [57048575, 57048988]]
ENST00000545080	[[57038233, 57038259], [57039000, 57039193], [57046829, 57046939], [57048575, 57049498]]	[[57039179, 57039193], [57046829, 57046939], [57048575, 57048988]]
NM_004282	[[57037103, 57037608], [57046829, 57046939], [57048575, 57050013]]	[[57037495, 57037608], [57046829, 57046939], [57048575, 57048988]]

Promoter

Chrom	Start	End	Description
chr6	57037089	57037146	CAGE_peak_1_at_BAG2_5end
chr6	57037150	57037161	CAGE_peak_5_at_BAG2_5end
chr6	57037165	57037172	CAGE_peak_6_at_BAG2_5end
chr6	57037421	57037481	CAGE_peak_2_at_BAG2_5end
chr6	57037487	57037509	CAGE_peak_3_at_BAG2_5end
chr6	57037538	57037554	CAGE_peak_4_at_BAG2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I057257	57257338	57259726	1.02	[{'connected_gene': 'BAG2', 'score': 16.18}, {'connected_gene': 'LOC101927211', 'score': 10.4}, {'connected_gene': 'RAB23', 'score': 6.1}, {'connected_gene': 'KIAA1586', 'score': 5.01}, {'connected_gene': 'LOC100506188', 'score': 0.77}, {'connected_gene': 'GC06M057222', 'score': 0.44}, {'connected_gene': 'GC06P057245', 'score': 0.39}]
chr6	GH06I057176	57176496	57178681	0.58	[{'connected_gene': 'KIAA1586', 'score': 26.84}, {'connected_gene': 'PRIM2', 'score': 18.04}, {'connected_gene': 'ZNF451', 'score': 11.02}, {'connected_gene': 'LOC101927211', 'score': 0.77}, {'connected_gene': 'BAG2', 'score': 0.44}, {'connected_gene': 'RAB23', 'score': 0.26}]
chr6	GH06I057045	57045975	57048001	2.28	[{'connected_gene': 'KIAA1586', 'score': 565.35}, {'connected_gene': 'GC06M057041', 'score': 550.77}, {'connected_gene': 'PRIM2', 'score': 23.33}, {'connected_gene': 'BEND6', 'score': 16.01}, {'connected_gene': 'ZNF451', 'score': 11.43}, {'connected_gene': 'LOC101927211', 'score': 10.21}, {'connected_gene': 'BAG2', 'score': 10.21}, {'connected_gene': 'ENSG00000272316', 'score': 9.69}, {'connected_gene': 'PIR59769', 'score': 0.31}]
chr6	GH06I057181	57181083	57183127	0.43	[{'connected_gene': 'KIAA1586', 'score': 15.27}, {'connected_gene': 'RAB23', 'score': 11.89}, {'connected_gene': 'ZNF451', 'score': 11.01}, {'connected_gene': 'LOC101927211', 'score': 0.44}, {'connected_gene': 'BAG2', 'score': 0.44}]
chr6	GH06I057104	57104001	57104600	0.2	[{'connected_gene': 'KIAA1586', 'score': 10.77}, {'connected_gene': 'ZNF451', 'score': 4.92}, {'connected_gene': 'GC06M057088', 'score': 0.39}, {'connected_gene': 'BAG2', 'score': 0.2}]
chr6	GH06I057070	57070063	57070132	0.73	[{'connected_gene': 'KIAA1586', 'score': 11.45}, {'connected_gene': 'LOC101927211', 'score': 9.94}, {'connected_gene': 'BAG2', 'score': 9.94}, {'connected_gene': 'PIR59769', 'score': 0.77}]
chr6	GH06I057312	57312174	57318533	2.54	[{'connected_gene': 'PRIM2', 'score': 586.93}, {'connected_gene': 'BEND6', 'score': 14.14}, {'connected_gene': 'LOC101927211', 'score': 10.29}, {'connected_gene': 'BAG2', 'score': 10.29}, {'connected_gene': 'DST', 'score': 10.2}, {'connected_gene': 'RAB23', 'score': 1.38}, {'connected_gene': 'GC06P057297', 'score': 0.37}, {'connected_gene': 'GC06M057367', 'score': 0.22}]
chr6	GH06I057256	57256666	57256812	0.66	[{'connected_gene': 'PRIM2', 'score': 21.31}, {'connected_gene': 'LOC101927211', 'score': 10.4}, {'connected_gene': 'BAG2', 'score': 10.4}, {'connected_gene': 'LOC100506188', 'score': 0.44}, {'connected_gene': 'GC06M057222', 'score': 0.44}, {'connected_gene': 'GC06P057245', 'score': 0.39}]
chr6	GH06I056901	56901736	56903440	1.02	[{'connected_gene': 'BEND6', 'score': 45.87}, {'connected_gene': 'DST', 'score': 12.67}, {'connected_gene': 'BAG2', 'score': 10.0}, {'connected_gene': 'LOC101927211', 'score': 10.0}, {'connected_gene': 'GC06M056915', 'score': 0.37}, {'connected_gene': 'GC06P056873', 'score': 0.29}]
chr6	GH06I056904	56904243	56905292	0.98	[{'connected_gene': 'BEND6', 'score': 51.05}, {'connected_gene': 'DST', 'score': 12.68}, {'connected_gene': 'LOC101927211', 'score': 10.0}, {'connected_gene': 'BAG2', 'score': 10.0}, {'connected_gene': 'GC06M056915', 'score': 0.39}, {'connected_gene': 'GC06P056873', 'score': 0.29}]
chr6	GH06I056866	56866323	56870435	1.25	[{'connected_gene': 'LOC101930010', 'score': 17.36}, {'connected_gene': 'BEND6', 'score': 15.27}, {'connected_gene': 'LOC101927211', 'score': 9.41}, {'connected_gene': 'BAG2', 'score': 9.41}, {'connected_gene': 'RPL17P26', 'score': 0.77}, {'connected_gene': 'DST', 'score': 0.17}]
chr6	GH06I057225	57225000	57225201	0.62	[{'connected_gene': 'LOC101927211', 'score': 10.5}, {'connected_gene': 'BAG2', 'score': 10.5}, {'connected_gene': 'KIAA1586', 'score': 9.63}, {'connected_gene': 'RAB23', 'score': 0.77}, {'connected_gene': 'GC06M057241', 'score': 0.37}, {'connected_gene': 'GC06M057222', 'score': 0.28}]
chr6	GH06I057171	57171289	57176330	2.07	[{'connected_gene': 'LOC101927211', 'score': 550.77}, {'connected_gene': 'BAG2', 'score': 550.77}, {'connected_gene': 'KIAA1586', 'score': 29.45}, {'connected_gene': 'ZNF451', 'score': 27.09}, {'connected_gene': 'PRIM2', 'score': 13.52}, {'connected_gene': 'LINC00680', 'score': 11.85}]
chr6	GH06I057258	57257103	57257252	0.51	[{'connected_gene': 'LOC101927211', 'score': 10.4}, {'connected_gene': 'BAG2', 'score': 10.4}, {'connected_gene': 'PRIM2', 'score': 5.4}, {'connected_gene': 'LOC100506188', 'score': 0.44}, {'connected_gene': 'GC06M057222', 'score': 0.44}, {'connected_gene': 'GC06P057245', 'score': 0.39}]
chr6	GH06I057252	57252428	57254592	0.77	[{'connected_gene': 'LOC101927211', 'score': 10.41}, {'connected_gene': 'BAG2', 'score': 10.4}, {'connected_gene': 'LOC100506188', 'score': 0.44}, {'connected_gene': 'GC06P057245', 'score': 0.44}, {'connected_gene': 'GC06M057222', 'score': 0.39}]
chr6	GH06I057247	57247141	57248505	0.52	[{'connected_gene': 'LOC101927211', 'score': 10.1}, {'connected_gene': 'BAG2', 'score': 10.09}, {'connected_gene': 'GC06P057245', 'score': 0.77}, {'connected_gene': 'LOC100506188', 'score': 0.37}, {'connected_gene': 'GC06M057222', 'score': 0.37}]
chr6	GH06I057264	57264947	57266848	0.89	[{'connected_gene': 'LOC101927211', 'score': 10.7}, {'connected_gene': 'BAG2', 'score': 10.7}, {'connected_gene': 'GC06M057222', 'score': 0.77}, {'connected_gene': 'PIR59303', 'score': 0.37}]
chr6	GH06I057267	57267182	57268792	1.09	[{'connected_gene': 'LOC101927211', 'score': 10.2}, {'connected_gene': 'BAG2', 'score': 10.19}, {'connected_gene': 'GC06M057222', 'score': 0.77}, {'connected_gene': 'PIR59303', 'score': 0.37}]
chr6	GH06I057261	57261755	57264265	0.92	[{'connected_gene': 'LOC100506188', 'score': 550.77}, {'connected_gene': 'GC06M057222', 'score': 550.77}, {'connected_gene': 'BAG2', 'score': 16.14}, {'connected_gene': 'LOC101927211', 'score': 10.71}, {'connected_gene': 'BEND6', 'score': 4.65}, {'connected_gene': 'GC06P057245', 'score': 0.37}]
chr6	GH06I057241	57241902	57243634	1.26	[{'connected_gene': 'GC06M057241', 'score': 550.77}, {'connected_gene': 'ZNF451', 'score': 19.8}, {'connected_gene': 'PRIM2', 'score': 16.04}, {'connected_gene': 'BAG2', 'score': 15.67}, {'connected_gene': 'GUSBP4', 'score': 12.23}, {'connected_gene': 'ENSG00000272316', 'score': 10.64}, {'connected_gene': 'KIAA1586', 'score': 9.92}, {'connected_gene': 'LOC101927211', 'score': 9.78}, {'connected_gene': 'BEND6', 'score': 5.89}, {'connected_gene': 'GC06P057245', 'score': 0.77}, {'connected_gene': 'GC06M057222', 'score': 0.34}]