PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000374050	[[117350025, 117350200], [117354831, 117354932], [117359849, 117360653]]	[[117350118, 117350200], [117354831, 117354932], [117359849, 117360023]]
ENST00000473413	[[117350056, 117350398], [117354831, 117354959]]	None
NM_004888	[[117349993, 117350200], [117354831, 117354932], [117359849, 117361152]]	[[117350118, 117350200], [117354831, 117354932], [117359849, 117360023]]

Promoter

Chrom	Start	End	Description
chr9	117349851	117349858	CAGE_peak_2_at_ATP6V1G1_5end
chr9	117350009	117350111	CAGE_peak_1_at_ATP6V1G1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I114884	114884519	114885646	1.34	[{'connected_gene': 'TNFSF15', 'score': 21.52}, {'connected_gene': 'ATP6V1G1', 'score': 2.22}, {'connected_gene': 'TNFSF8', 'score': 1.4}, {'connected_gene': 'GC09P114903', 'score': 0.37}, {'connected_gene': 'LOC645266', 'score': 0.28}]
chr9	GH09I114883	114883745	114884246	0.55	[{'connected_gene': 'TNFSF15', 'score': 31.72}, {'connected_gene': 'ATP6V1G1', 'score': 3.81}, {'connected_gene': 'TNFSF8', 'score': 3.22}, {'connected_gene': 'WHRN', 'score': 1.64}, {'connected_gene': 'GC09P114903', 'score': 0.37}, {'connected_gene': 'LOC645266', 'score': 0.28}]
chr9	GH09I114892	114892906	114896452	1.58	[{'connected_gene': 'TNFSF15', 'score': 34.86}, {'connected_gene': 'TNFSF8', 'score': 17.6}, {'connected_gene': 'ATP6V1G1', 'score': 3.83}, {'connected_gene': 'WHRN', 'score': 1.86}, {'connected_gene': 'GC09P114903', 'score': 0.44}, {'connected_gene': 'LOC645266', 'score': 0.25}]
chr9	GH09I114906	114906104	114911130	1.66	[{'connected_gene': 'TNFSF15', 'score': 24.59}, {'connected_gene': 'TNFSF8', 'score': 17.66}, {'connected_gene': 'ATP6V1G1', 'score': 5.05}, {'connected_gene': 'WHRN', 'score': 2.35}, {'connected_gene': 'GC09P114903', 'score': 0.44}]
chr9	GH09I114555	114555252	114555392	0.35	[{'connected_gene': 'TNFSF15', 'score': 7.51}, {'connected_gene': 'WHRN', 'score': 4.77}, {'connected_gene': 'ATP6V1G1', 'score': 3.66}, {'connected_gene': 'TNFSF8', 'score': 1.66}, {'connected_gene': 'LOC105376229', 'score': 0.39}]
chr9	GH09I114413	114413446	114415547	0.83	[{'connected_gene': 'TNFSF15', 'score': 24.84}, {'connected_gene': 'WHRN', 'score': 24.66}, {'connected_gene': 'TMEM268', 'score': 10.97}, {'connected_gene': 'ENSG00000201749', 'score': 10.97}, {'connected_gene': 'AKNA', 'score': 10.01}, {'connected_gene': 'ATP6V1G1', 'score': 4.15}, {'connected_gene': 'LOC100131877', 'score': 0.18}]
chr9	GH09I114586	114586628	114593867	2.51	[{'connected_gene': 'ATP6V1G1', 'score': 551.87}, {'connected_gene': 'WHRN', 'score': 44.41}, {'connected_gene': 'ZNF618', 'score': 13.24}, {'connected_gene': 'ENSG00000201749', 'score': 12.96}, {'connected_gene': 'COL27A1', 'score': 10.64}, {'connected_gene': 'TMEM268', 'score': 4.71}, {'connected_gene': 'TNFSF8', 'score': 1.77}, {'connected_gene': 'AKNA', 'score': 1.16}, {'connected_gene': 'PIR33481', 'score': 0.44}, {'connected_gene': 'GC09P114599', 'score': 0.44}]
chr9	GH09I115004	115004540	115004843	0.48	[{'connected_gene': 'TNFSF8', 'score': 21.42}, {'connected_gene': 'TNFSF15', 'score': 10.63}, {'connected_gene': 'ATP6V1G1', 'score': 2.75}, {'connected_gene': 'WHRN', 'score': 1.62}, {'connected_gene': 'GC09M115052', 'score': 0.25}]
chr9	GH09I114989	114989032	114989784	1.22	[{'connected_gene': 'TNFSF8', 'score': 27.22}, {'connected_gene': 'TNFSF15', 'score': 5.91}, {'connected_gene': 'ATP6V1G1', 'score': 2.9}, {'connected_gene': 'WHRN', 'score': 1.76}, {'connected_gene': 'GC09M115052', 'score': 0.21}]
chr9	GH09I114953	114953308	114955800	1.43	[{'connected_gene': 'TNFSF8', 'score': 30.9}, {'connected_gene': 'TNFSF15', 'score': 9.39}, {'connected_gene': 'ATP6V1G1', 'score': 3.86}, {'connected_gene': 'WHRN', 'score': 1.88}, {'connected_gene': 'GC09M115052', 'score': 0.15}]
chr9	GH09I114956	114956931	114959374	1.23	[{'connected_gene': 'TNFSF8', 'score': 26.0}, {'connected_gene': 'TNFSF15', 'score': 5.29}, {'connected_gene': 'ATP6V1G1', 'score': 3.46}, {'connected_gene': 'WHRN', 'score': 1.96}, {'connected_gene': 'GC09M115052', 'score': 0.16}]
chr9	GH09I114968	114968271	114969490	1.2	[{'connected_gene': 'TNFSF8', 'score': 26.54}, {'connected_gene': 'TNFSF15', 'score': 16.71}, {'connected_gene': 'ATP6V1G1', 'score': 3.49}, {'connected_gene': 'WHRN', 'score': 1.4}, {'connected_gene': 'GC09M115052', 'score': 0.18}]
chr9	GH09I114921	114921339	114921492	0.49	[{'connected_gene': 'TNFSF8', 'score': 16.25}, {'connected_gene': 'TNFSF15', 'score': 4.91}, {'connected_gene': 'ATP6V1G1', 'score': 3.01}, {'connected_gene': 'WHRN', 'score': 1.28}, {'connected_gene': 'GC09P114903', 'score': 0.37}]
chr9	GH09I115008	115008284	115009266	1.17	[{'connected_gene': 'TNFSF8', 'score': 27.21}, {'connected_gene': 'TNFSF15', 'score': 5.46}, {'connected_gene': 'ATP6V1G1', 'score': 2.66}, {'connected_gene': 'GC09M115052', 'score': 0.26}]
chr9	GH09I114998	114998404	114998847	0.27	[{'connected_gene': 'TNFSF8', 'score': 23.69}, {'connected_gene': 'TNFSF15', 'score': 15.84}, {'connected_gene': 'ATP6V1G1', 'score': 2.16}, {'connected_gene': 'GC09M115052', 'score': 0.23}]
chr9	GH09I114970	114970174	114970540	0.25	[{'connected_gene': 'TNFSF8', 'score': 19.21}, {'connected_gene': 'TNFSF15', 'score': 11.06}, {'connected_gene': 'ATP6V1G1', 'score': 1.49}, {'connected_gene': 'GC09M115052', 'score': 0.18}]
chr9	GH09I115006	115006609	115007376	1.15	[{'connected_gene': 'TNFSF8', 'score': 25.42}, {'connected_gene': 'TNFSF15', 'score': 19.83}, {'connected_gene': 'ATP6V1G1', 'score': 3.27}, {'connected_gene': 'GC09M115052', 'score': 0.25}]
chr9	GH09I114999	114999989	115000536	0.64	[{'connected_gene': 'TNFSF8', 'score': 22.67}, {'connected_gene': 'TNFSF15', 'score': 20.25}, {'connected_gene': 'TNC', 'score': 9.73}, {'connected_gene': 'ATP6V1G1', 'score': 2.58}, {'connected_gene': 'WHRN', 'score': 1.33}, {'connected_gene': 'GC09M115052', 'score': 0.23}]
chr9	GH09I115016	115016376	115016682	0.58	[{'connected_gene': 'TNFSF8', 'score': 23.03}, {'connected_gene': 'TNFSF15', 'score': 18.89}, {'connected_gene': 'ENSG00000201749', 'score': 9.95}, {'connected_gene': 'TMEM268', 'score': 9.95}, {'connected_gene': 'ATP6V1G1', 'score': 3.14}, {'connected_gene': 'GC09M115052', 'score': 0.28}]
chr9	GH09I115012	115012209	115012551	0.22	[{'connected_gene': 'TNFSF8', 'score': 15.47}, {'connected_gene': 'TNFSF15', 'score': 12.35}, {'connected_gene': 'ENSG00000201749', 'score': 9.95}, {'connected_gene': 'TMEM268', 'score': 9.95}, {'connected_gene': 'ATP6V1G1', 'score': 1.43}, {'connected_gene': 'GC09M115052', 'score': 0.26}]
chr9	GH09I114927	114927182	114932075	1.99	[{'connected_gene': 'TNFSF8', 'score': 580.9}, {'connected_gene': 'ATP6V1G1', 'score': 4.95}, {'connected_gene': 'TNFSF15', 'score': 4.37}, {'connected_gene': 'WHRN', 'score': 2.14}, {'connected_gene': 'GC09P114903', 'score': 0.31}]
chr9	GH09I114360	114360857	114391414	2.75	[{'connected_gene': 'AKNA', 'score': 576.12}, {'connected_gene': 'WHRN', 'score': 27.79}, {'connected_gene': 'TMEM268', 'score': 11.11}, {'connected_gene': 'ENSG00000201749', 'score': 11.11}, {'connected_gene': 'ORM1', 'score': 5.94}, {'connected_gene': 'ORM2', 'score': 1.46}, {'connected_gene': 'ATP6V1G1', 'score': 1.42}, {'connected_gene': 'ENSG00000235119', 'score': 0.34}]
chr9	GH09I114246	114246355	114247123	0.4	[{'connected_gene': 'MIR455', 'score': 12.49}, {'connected_gene': 'COL27A1', 'score': 11.03}, {'connected_gene': 'ATP6V1G1', 'score': 5.5}, {'connected_gene': 'LOC105376224', 'score': 0.19}]
chr9	GH09I114249	114249350	114251055	0.89	[{'connected_gene': 'MIR455', 'score': 11.31}, {'connected_gene': 'COL27A1', 'score': 11.03}, {'connected_gene': 'ATP6V1G1', 'score': 6.08}, {'connected_gene': 'LOC105376224', 'score': 0.2}]
chr9	GH09I114550	114550617	114554297	1.45	[{'connected_gene': 'WHRN', 'score': 35.68}, {'connected_gene': 'TNFSF15', 'score': 15.76}, {'connected_gene': 'ATP6V1G1', 'score': 4.87}, {'connected_gene': 'TNFSF8', 'score': 4.71}, {'connected_gene': 'LOC105376229', 'score': 0.39}]
chr9	GH09I114409	114409537	114409690	0.69	[{'connected_gene': 'WHRN', 'score': 15.55}, {'connected_gene': 'TNFSF15', 'score': 4.94}, {'connected_gene': 'ATP6V1G1', 'score': 2.05}, {'connected_gene': 'AKNA', 'score': 0.39}, {'connected_gene': 'LOC100131877', 'score': 0.18}]
chr9	GH09I114483	114483161	114485670	1.67	[{'connected_gene': 'WHRN', 'score': 25.66}, {'connected_gene': 'TNFSF15', 'score': 19.8}, {'connected_gene': 'TNFSF8', 'score': 4.38}, {'connected_gene': 'ATP6V1G1', 'score': 4.35}, {'connected_gene': 'LOC100131877', 'score': 0.44}, {'connected_gene': 'AKNA', 'score': 0.17}]
chr9	GH09I114582	114582365	114584693	0.43	[{'connected_gene': 'WHRN', 'score': 12.27}, {'connected_gene': 'ATP6V1G1', 'score': 0.77}, {'connected_gene': 'ENSG00000235797', 'score': 0.39}]
chr9	GH09I114317	114317576	114318772	1.24	[{'connected_gene': 'LOC105376224', 'score': 550.77}, {'connected_gene': 'ORM2', 'score': 10.5}, {'connected_gene': 'ATP6V1G1', 'score': 2.24}, {'connected_gene': 'ORM1', 'score': 2.22}, {'connected_gene': 'TNFSF15', 'score': 2.12}, {'connected_gene': 'MIR455', 'score': 0.14}]
chr9	GH09I114897	114897326	114903764	1.21	[{'connected_gene': 'GC09P114903', 'score': 550.77}, {'connected_gene': 'TNFSF8', 'score': 27.63}, {'connected_gene': 'TNFSF15', 'score': 19.14}, {'connected_gene': 'ATP6V1G1', 'score': 5.22}, {'connected_gene': 'WHRN', 'score': 3.25}, {'connected_gene': 'LOC645266', 'score': 0.23}]
chr9	GH09I114597	114597898	114599084	0.43	[{'connected_gene': 'PIR33481', 'score': 550.77}, {'connected_gene': 'GC09P114599', 'score': 550.77}, {'connected_gene': 'WHRN', 'score': 13.51}, {'connected_gene': 'TMEM268', 'score': 0.44}, {'connected_gene': 'ATP6V1G1', 'score': 0.39}]