PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000371996	[[89264631, 89265309], [89268092, 89268290], [89272880, 89272978], [89280792, 89280926], [89311838, 89313145]]	[[89264672, 89265309], [89268092, 89268290], [89272880, 89272978], [89280792, 89280926], [89311838, 89312235]]
ENST00000371994	[[89264631, 89265309], [89268092, 89268290], [89311838, 89313145]]	[[89264672, 89265309], [89268092, 89268290], [89311838, 89311942]]
ENST00000536010	[[89267589, 89267995], [89268092, 89268290], [89272880, 89272978], [89280792, 89280926], [89311838, 89313217]]	[[89267961, 89267995], [89268092, 89268290], [89272880, 89272978], [89280792, 89280926], [89311838, 89312235]]
ENST00000472891	[[89280871, 89280926], [89306329, 89306452], [89311838, 89312394]]	None
NM_001178117	[[89264222, 89265309], [89268092, 89268290], [89311838, 89313218]]	[[89264672, 89265309], [89268092, 89268290], [89311838, 89311942]]
NM_004897	[[89264222, 89265309], [89268092, 89268290], [89272880, 89272978], [89280792, 89280926], [89311838, 89313218]]	[[89264672, 89265309], [89268092, 89268290], [89272880, 89272978], [89280792, 89280926], [89311838, 89312235]]
NM_001178118	[[89267589, 89267995], [89268092, 89268290], [89272880, 89272978], [89280792, 89280926], [89311838, 89313218]]	[[89267961, 89267995], [89268092, 89268290], [89272880, 89272978], [89280792, 89280926], [89311838, 89312235]]

Promoter

Chrom	Start	End	Description
chr10	89264625	89264637	CAGE_peak_2_at_MINPP1_5end
chr10	89264642	89264665	CAGE_peak_1_at_MINPP1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I087500	87500342	87501541	1.03	[{'connected_gene': 'MINPP1', 'score': 550.77}, {'connected_gene': 'PIR60830', 'score': 550.77}, {'connected_gene': 'PAPSS2', 'score': 4.73}]
chr10	GH10I087503	87503109	87508481	2.03	[{'connected_gene': 'MINPP1', 'score': 550.77}, {'connected_gene': 'MIR4678', 'score': 550.77}, {'connected_gene': 'PAPSS2', 'score': 4.73}, {'connected_gene': 'GC10P087578', 'score': 0.19}]
chr10	GH10I087541	87541244	87541353	0.46	[{'connected_gene': 'MINPP1', 'score': 7.89}, {'connected_gene': 'MIR4678', 'score': 0.28}, {'connected_gene': 'GC10P087578', 'score': 0.28}]
chr10	GH10I087523	87523695	87524700	0.43	[{'connected_gene': 'MINPP1', 'score': 0.34}, {'connected_gene': 'MIR4678', 'score': 0.34}, {'connected_gene': 'GC10P087578', 'score': 0.23}]
chr10	GH10I087545	87545714	87548622	1	[{'connected_gene': 'PAPSS2', 'score': 16.33}, {'connected_gene': 'ENSG00000196566', 'score': 11.71}, {'connected_gene': 'MINPP1', 'score': 8.06}, {'connected_gene': 'GC10P087578', 'score': 0.29}, {'connected_gene': 'MIR4678', 'score': 0.26}]
chr10	GH10I087550	87550622	87551240	0.2	[{'connected_gene': 'PAPSS2', 'score': 10.94}, {'connected_gene': 'ENSG00000196566', 'score': 10.94}, {'connected_gene': 'MINPP1', 'score': 7.86}, {'connected_gene': 'GC10P087578', 'score': 0.31}, {'connected_gene': 'MIR4678', 'score': 0.25}]
chr10	GH10I087558	87558651	87559936	0.2	[{'connected_gene': 'PAPSS2', 'score': 5.44}, {'connected_gene': 'MINPP1', 'score': 5.32}, {'connected_gene': 'GC10P087578', 'score': 0.37}, {'connected_gene': 'MIR4678', 'score': 0.22}]
chr10	GH10I088061	88061802	88068399	1.59	[{'connected_gene': 'PTEN', 'score': 29.27}, {'connected_gene': 'KLLN', 'score': 19.14}, {'connected_gene': 'MINPP1', 'score': 5.4}, {'connected_gene': 'NUTM2D', 'score': 4.15}, {'connected_gene': 'MED6P1', 'score': 0.37}, {'connected_gene': 'GC10P088093', 'score': 0.31}, {'connected_gene': 'LOC105378415', 'score': 0.28}]
chr10	GH10I086534	86534919	86537382	1.04	[{'connected_gene': 'RNU6-780P', 'score': 11.26}, {'connected_gene': 'MINPP1', 'score': 6.37}, {'connected_gene': 'LDB3', 'score': 5.23}, {'connected_gene': 'LOC105378408', 'score': 0.77}, {'connected_gene': 'LOC105378407', 'score': 0.34}]
chr10	GH10I087533	87533601	87534001	0.82	[{'connected_gene': 'MIR4678', 'score': 0.31}, {'connected_gene': 'MINPP1', 'score': 0.29}, {'connected_gene': 'GC10P087578', 'score': 0.26}]
chr10	GH10I087534	87533224	87533472	0.43	[{'connected_gene': 'MIR4678', 'score': 0.31}, {'connected_gene': 'MINPP1', 'score': 0.29}, {'connected_gene': 'GC10P087578', 'score': 0.25}]
chr10	GH10I087532	87532844	87532993	0.38	[{'connected_gene': 'MIR4678', 'score': 0.31}, {'connected_gene': 'MINPP1', 'score': 0.29}, {'connected_gene': 'GC10P087578', 'score': 0.25}]
chr10	GH10I087544	87544784	87544933	0.49	[{'connected_gene': 'GC10P087578', 'score': 0.29}, {'connected_gene': 'MINPP1', 'score': 0.26}, {'connected_gene': 'MIR4678', 'score': 0.26}]
chr10	GH10I087531	87531982	87532713	0.46	[{'connected_gene': 'ENSG00000272631', 'score': 11.41}, {'connected_gene': 'MINPP1', 'score': 0.31}, {'connected_gene': 'MIR4678', 'score': 0.31}, {'connected_gene': 'GC10P087578', 'score': 0.25}]
chr10	GH10I087203	87203064	87205799	1.15	[{'connected_gene': 'GC10M087204', 'score': 550.77}, {'connected_gene': 'NUTM2A', 'score': 10.53}, {'connected_gene': 'FAM35A', 'score': 7.1}, {'connected_gene': 'MINPP1', 'score': 5.04}, {'connected_gene': 'LOC105378410', 'score': 0.77}, {'connected_gene': 'NUTM2A-AS1', 'score': 0.12}]