PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370551	[[87380330, 87380843], [87538616, 87538855], [87549876, 87549962], [87558213, 87558352], [87563520, 87564128]]	[[87380719, 87380843], [87538616, 87538855], [87549876, 87549962], [87558213, 87558352], [87563520, 87563622]]
ENST00000370550	[[87380356, 87380843], [87538616, 87538855], [87549876, 87549962], [87558213, 87558352], [87563520, 87563618], [87569114, 87569272], [87570152, 87575681]]	[[87380719, 87380843], [87538616, 87538855], [87549876, 87549962], [87558213, 87558352], [87563520, 87563618], [87569114, 87569272], [87570152, 87570379]]
ENST00000591456	[[87422166, 87422255], [87424122, 87424190], [87538616, 87538855], [87549876, 87549962], [87558213, 87558271]]	[[87538666, 87538855], [87549876, 87549962], [87558213, 87558271]]
ENST00000356813	[[87458764, 87458810], [87538616, 87538855], [87549876, 87549962], [87558213, 87558352], [87563520, 87563618], [87569114, 87569272], [87599296, 87599401], [87599647, 87602334]]	[[87458764, 87458810], [87538616, 87538855], [87549876, 87549962], [87558213, 87558352], [87563520, 87563618], [87569114, 87569272], [87599296, 87599401], [87599647, 87599745]]
NM_001134492	[[87380334, 87380843], [87538616, 87538855], [87549876, 87549962], [87558213, 87558352], [87563520, 87564125]]	[[87380719, 87380843], [87538616, 87538855], [87549876, 87549962], [87558213, 87558352], [87563520, 87563622]]
NM_012262	[[87380334, 87380843], [87538616, 87538855], [87549876, 87549962], [87558213, 87558352], [87563520, 87563618], [87569114, 87569272], [87570152, 87575681]]	[[87380719, 87380843], [87538616, 87538855], [87549876, 87549962], [87558213, 87558352], [87563520, 87563618], [87569114, 87569272], [87570152, 87570379]]

Promoter

Chrom	Start	End	Description
chr1	87380299	87380475	CAGE_peak_1_at_HS2ST1_5end
chr1	87380489	87380514	CAGE_peak_5_at_HS2ST1_5end
chr1	87380591	87380619	CAGE_peak_3_at_HS2ST1_5end
chr1	87595497	87595541	CAGE_peak_2_at_HS2ST1_5end
chr1	87595542	87595557	CAGE_peak_6_at_HS2ST1_5end
chr1	87595558	87595574	CAGE_peak_8_at_HS2ST1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I086912	86912438	86916851	2.1	[{'connected_gene': 'HS2ST1', 'score': 558.05}, {'connected_gene': 'SELENOF', 'score': 550.77}, {'connected_gene': 'LOC105378828', 'score': 12.56}]
chr1	GH01I086739	86739596	86740924	0.63	[{'connected_gene': 'HS2ST1', 'score': 4.57}, {'connected_gene': 'GC01P086761', 'score': 0.34}, {'connected_gene': 'GC01P086705', 'score': 0.29}, {'connected_gene': 'SH3GLB1', 'score': 0.28}]
chr1	GH01I087223	87223634	87227360	1.17	[{'connected_gene': 'LINC01140', 'score': 5.55}, {'connected_gene': 'HS2ST1', 'score': 1.72}, {'connected_gene': 'LMO4', 'score': 1.5}, {'connected_gene': 'GC01P087235', 'score': 0.39}, {'connected_gene': 'LOC101927844', 'score': 0.39}]
chr1	GH01I086971	86971551	86972410	0.52	[{'connected_gene': 'LOC105378828', 'score': 13.69}, {'connected_gene': 'ENSG00000267561', 'score': 0.34}, {'connected_gene': 'ENSG00000267734', 'score': 0.28}, {'connected_gene': 'HS2ST1', 'score': 0.22}]
chr1	GH01I087061	87061526	87063274	0.57	[{'connected_gene': 'LOC105378828', 'score': 11.98}, {'connected_gene': 'ODF2L', 'score': 10.01}, {'connected_gene': 'GC01P087079', 'score': 0.37}, {'connected_gene': 'LOC100421465', 'score': 0.37}, {'connected_gene': 'ENSG00000267561', 'score': 0.2}, {'connected_gene': 'HS2ST1', 'score': 0.11}]
chr1	GH01I087025	87025201	87025407	0.98	[{'connected_gene': 'LOC105378828', 'score': 6.35}, {'connected_gene': 'GC01M087008', 'score': 0.37}, {'connected_gene': 'PIR57554', 'score': 0.37}, {'connected_gene': 'LOC100421468', 'score': 0.34}, {'connected_gene': 'ENSG00000267561', 'score': 0.29}, {'connected_gene': 'HS2ST1', 'score': 0.14}]
chr1	GH01I087056	87056933	87059924	0.96	[{'connected_gene': 'LOC105378828', 'score': 12.12}, {'connected_gene': 'LOC100421465', 'score': 0.39}, {'connected_gene': 'GC01P087079', 'score': 0.34}, {'connected_gene': 'ENSG00000267561', 'score': 0.2}, {'connected_gene': 'HS2ST1', 'score': 0.11}]
chr1	GH01I087044	87044958	87046577	0.6	[{'connected_gene': 'LOC100421465', 'score': 550.77}, {'connected_gene': 'LOC100421468', 'score': 550.77}, {'connected_gene': 'LOC105378828', 'score': 13.75}, {'connected_gene': 'GC01M087008', 'score': 0.28}, {'connected_gene': 'PIR57554', 'score': 0.28}, {'connected_gene': 'ENSG00000267561', 'score': 0.23}, {'connected_gene': 'HS2ST1', 'score': 0.12}]
chr1	GH01I087202	87202401	87203400	0.93	[{'connected_gene': 'GC01M087204', 'score': 550.77}, {'connected_gene': 'HS2ST1', 'score': 2.43}, {'connected_gene': 'LMO4', 'score': 1.9}, {'connected_gene': 'GC01M087194', 'score': 0.44}]
chr1	GH01I086993	86993418	86993567	0.85	[{'connected_gene': 'ENSG00000267561', 'score': 550.77}, {'connected_gene': 'GC01M087008', 'score': 0.39}, {'connected_gene': 'PIR57554', 'score': 0.39}, {'connected_gene': 'HS2ST1', 'score': 0.18}]
chr1	GH01I087084	87084378	87084507	0.56	[{'connected_gene': 'GC01P087079', 'score': 0.77}, {'connected_gene': 'GC01P087094', 'score': 0.44}, {'connected_gene': 'ENSG00000267561', 'score': 0.16}, {'connected_gene': 'HS2ST1', 'score': 0.1}]
chr1	GH01I087794	87794696	87798370	1.01	[{'connected_gene': 'GC01P087798', 'score': 550.77}, {'connected_gene': 'HS2ST1', 'score': 4.14}, {'connected_gene': 'GC01M087659', 'score': 0.12}]
chr1	GH01I086992	86992918	86993067	0.56	[{'connected_gene': 'ENSG00000267561', 'score': 550.77}, {'connected_gene': 'LOC105378828', 'score': 11.42}, {'connected_gene': 'HS2ST1', 'score': 7.14}, {'connected_gene': 'ENSG00000267734', 'score': 0.22}]
chr1	GH01I086933	86933170	86935096	0.68	[{'connected_gene': 'ENSG00000267734', 'score': 550.77}, {'connected_gene': 'LOC105378828', 'score': 13.99}, {'connected_gene': 'HS2ST1', 'score': 7.84}]