PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000369755	[[105726958, 105727653], [105750432, 105750597], [105752355, 105752404], [105752741, 105752891], [105758656, 105758729], [105758876, 105759071], [105759624, 105759706], [105761201, 105761330], [105761929, 105763285], [105765318, 105765449], [105765669, 105765793], [105767934, 105768114], [105770573, 105770666], [105777917, 105778047], [105778541, 105778666], [105779491, 105779680], [105780245, 105780371], [105781377, 105781491], [105785331, 105788991]]	[[105727503, 105727653], [105750432, 105750597], [105752355, 105752404], [105752741, 105752891], [105758656, 105758729], [105758876, 105759071], [105759624, 105759706], [105761201, 105761330], [105761929, 105763285], [105765318, 105765449], [105765669, 105765793], [105767934, 105768114], [105770573, 105770666], [105777917, 105778047], [105778541, 105778666], [105779491, 105779680], [105780245, 105780371], [105781377, 105781491], [105785331, 105785478]]
ENST00000335753	[[105726958, 105727653], [105750432, 105750597], [105752355, 105752404], [105752741, 105752891], [105758656, 105758729], [105758876, 105759071], [105759624, 105759706], [105761201, 105761330], [105761929, 105763285], [105765318, 105765449], [105765669, 105765793], [105767934, 105768114], [105777917, 105778047], [105778541, 105778666], [105779491, 105779680], [105780245, 105780371], [105781377, 105781491], [105785331, 105788991]]	[[105727503, 105727653], [105750432, 105750597], [105752355, 105752404], [105752741, 105752891], [105758656, 105758729], [105758876, 105759071], [105759624, 105759706], [105761201, 105761330], [105761929, 105763285], [105765318, 105765449], [105765669, 105765793], [105767934, 105768114], [105777917, 105778047], [105778541, 105778666], [105779491, 105779680], [105780245, 105780371], [105781377, 105781491], [105785331, 105785478]]
ENST00000474260	[[105767955, 105768114], [105777917, 105778047], [105778541, 105778874]]	None
NM_001304743	[[105726942, 105727653], [105750432, 105750597], [105752355, 105752404], [105752741, 105752891], [105758656, 105758729], [105758876, 105759071], [105759624, 105759706], [105761201, 105761330], [105761929, 105763285], [105765318, 105765449], [105765669, 105765793], [105767934, 105768114], [105777917, 105778047], [105778541, 105778666], [105779491, 105779680], [105780245, 105780371], [105781377, 105781491], [105785331, 105788991]]	[[105727503, 105727653], [105750432, 105750597], [105752355, 105752404], [105752741, 105752891], [105758656, 105758729], [105758876, 105759071], [105759624, 105759706], [105761201, 105761330], [105761929, 105763285], [105765318, 105765449], [105765669, 105765793], [105767934, 105768114], [105777917, 105778047], [105778541, 105778666], [105779491, 105779680], [105780245, 105780371], [105781377, 105781491], [105785331, 105785478]]
NM_014720	[[105726942, 105727653], [105750432, 105750597], [105752355, 105752404], [105752741, 105752891], [105758656, 105758729], [105758876, 105759071], [105759624, 105759706], [105761201, 105761330], [105761929, 105763285], [105765318, 105765449], [105765669, 105765793], [105767934, 105768114], [105770573, 105770666], [105777917, 105778047], [105778541, 105778666], [105779491, 105779680], [105780245, 105780371], [105781377, 105781491], [105785331, 105788991]]	[[105727503, 105727653], [105750432, 105750597], [105752355, 105752404], [105752741, 105752891], [105758656, 105758729], [105758876, 105759071], [105759624, 105759706], [105761201, 105761330], [105761929, 105763285], [105765318, 105765449], [105765669, 105765793], [105767934, 105768114], [105770573, 105770666], [105777917, 105778047], [105778541, 105778666], [105779491, 105779680], [105780245, 105780371], [105781377, 105781491], [105785331, 105785478]]

Promoter

Chrom	Start	End	Description
chr10	105726862	105726986	CAGE_peak_1_at_SLK_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I103905	103905129	103914106	1.77	[{'connected_gene': 'SLK', 'score': 17.12}, {'connected_gene': 'STN1', 'score': 7.17}, {'connected_gene': 'ENSG00000260461', 'score': 6.19}, {'connected_gene': 'GSTO2', 'score': 5.62}, {'connected_gene': 'SH3PXD2A', 'score': 4.74}, {'connected_gene': 'GSTO1', 'score': 3.03}, {'connected_gene': 'GC10M103885', 'score': 0.37}]
chr10	GH10I103922	103922932	103924122	0.69	[{'connected_gene': 'SLK', 'score': 6.77}, {'connected_gene': 'STN1', 'score': 0.44}, {'connected_gene': 'LOC102724351', 'score': 0.26}]
chr10	GH10I103925	103925723	103925872	0.2	[{'connected_gene': 'SLK', 'score': 5.94}, {'connected_gene': 'STN1', 'score': 0.44}, {'connected_gene': 'LOC102724351', 'score': 0.26}]
chr10	GH10I103926	103926103	103926252	0.2	[{'connected_gene': 'SLK', 'score': 6.78}, {'connected_gene': 'STN1', 'score': 0.44}, {'connected_gene': 'LOC102724351', 'score': 0.26}]
chr10	GH10I103941	103941372	103943237	0.31	[{'connected_gene': 'SLK', 'score': 7.82}, {'connected_gene': 'CALHM2', 'score': 5.46}, {'connected_gene': 'STN1', 'score': 0.34}, {'connected_gene': 'LOC102724351', 'score': 0.34}]
chr10	GH10I103899	103899443	103899592	0.4	[{'connected_gene': 'SLK', 'score': 11.66}, {'connected_gene': 'MIR936', 'score': 10.7}, {'connected_gene': 'GC10M103885', 'score': 0.44}, {'connected_gene': 'STN1', 'score': 0.37}]
chr10	GH10I103900	103899859	103901854	0.66	[{'connected_gene': 'SLK', 'score': 16.33}, {'connected_gene': 'MIR936', 'score': 10.7}, {'connected_gene': 'STN1', 'score': 5.06}, {'connected_gene': 'GC10M103885', 'score': 0.44}]
chr10	GH10I104316	104316368	104341174	2.81	[{'connected_gene': 'ITPRIP', 'score': 578.89}, {'connected_gene': 'GSTO2', 'score': 20.11}, {'connected_gene': 'PDCD11', 'score': 19.85}, {'connected_gene': 'CFAP58', 'score': 18.41}, {'connected_gene': 'SFR1', 'score': 15.41}, {'connected_gene': 'CFAP58-AS1', 'score': 12.26}, {'connected_gene': 'PCGF6', 'score': 10.39}, {'connected_gene': 'TAF5', 'score': 10.36}, {'connected_gene': 'ENSG00000260461', 'score': 10.23}, {'connected_gene': 'GSTO1', 'score': 9.75}, {'connected_gene': 'SLK', 'score': 3.03}, {'connected_gene': 'LOC101927472', 'score': 0.44}]
chr10	GH10I103349	103349963	103351835	1.98	[{'connected_gene': 'PCGF6', 'score': 561.14}, {'connected_gene': 'PDCD11', 'score': 24.51}, {'connected_gene': 'ENSG00000260461', 'score': 20.94}, {'connected_gene': 'SLK', 'score': 12.1}, {'connected_gene': 'MIR1307', 'score': 11.49}, {'connected_gene': 'ATP5MD', 'score': 11.47}, {'connected_gene': 'RNU11-3P', 'score': 10.74}, {'connected_gene': 'NEURL1-AS1', 'score': 9.94}, {'connected_gene': 'CALHM2', 'score': 6.56}, {'connected_gene': 'GC10M103313', 'score': 0.28}]
chr10	GH10I103892	103892293	103897049	1.54	[{'connected_gene': 'STN1', 'score': 17.12}, {'connected_gene': 'SLK', 'score': 15.97}, {'connected_gene': 'SH3PXD2A', 'score': 11.45}, {'connected_gene': 'MIR936', 'score': 10.69}, {'connected_gene': 'COL17A1', 'score': 10.54}, {'connected_gene': 'GC10M103885', 'score': 0.77}]
chr10	GH10I103914	103914453	103920574	2.26	[{'connected_gene': 'STN1', 'score': 558.08}, {'connected_gene': 'SLK', 'score': 11.47}, {'connected_gene': 'SORCS3', 'score': 5.54}, {'connected_gene': 'GC10M103885', 'score': 0.31}]
chr10	GH10I103928	103928644	103929903	0.72	[{'connected_gene': 'STN1', 'score': 6.86}, {'connected_gene': 'SLK', 'score': 6.81}, {'connected_gene': 'GSTO2', 'score': 4.91}, {'connected_gene': 'LOC102724351', 'score': 0.28}]
chr10	GH10I103897	103897168	103897840	0.38	[{'connected_gene': 'STN1', 'score': 17.88}, {'connected_gene': 'SLK', 'score': 11.66}, {'connected_gene': 'MIR936', 'score': 10.69}, {'connected_gene': 'GC10M103885', 'score': 0.44}]
chr10	GH10I103986	103986401	103986692	0.58	[{'connected_gene': 'STN1', 'score': 11.13}, {'connected_gene': 'COL17A1', 'score': 9.86}, {'connected_gene': 'GSTO1', 'score': 5.79}, {'connected_gene': 'RN7SL524P', 'score': 0.39}, {'connected_gene': 'SLK', 'score': 0.37}, {'connected_gene': 'MIR936', 'score': 0.21}]
chr10	GH10I103982	103982736	103984599	0.79	[{'connected_gene': 'STN1', 'score': 11.47}, {'connected_gene': 'COL17A1', 'score': 8.68}, {'connected_gene': 'RN7SL524P', 'score': 0.44}, {'connected_gene': 'SLK', 'score': 0.37}, {'connected_gene': 'MIR936', 'score': 0.21}]
chr10	GH10I103958	103958796	103959809	0.2	[{'connected_gene': 'STN1', 'score': 12.21}, {'connected_gene': 'SFR1', 'score': 10.94}, {'connected_gene': 'SLK', 'score': 7.14}, {'connected_gene': 'CALHM2', 'score': 4.68}, {'connected_gene': 'LOC102724351', 'score': 0.44}]
chr10	GH10I103367	103367163	103369346	2.07	[{'connected_gene': 'TAF5', 'score': 561.11}, {'connected_gene': 'PDCD11', 'score': 21.43}, {'connected_gene': 'SFXN2', 'score': 13.66}, {'connected_gene': 'SLK', 'score': 13.12}, {'connected_gene': 'ENSG00000260461', 'score': 11.98}, {'connected_gene': 'CALHM2', 'score': 11.37}, {'connected_gene': 'GC10P103388', 'score': 0.34}]
chr10	GH10I103665	103665063	103669847	1.53	[{'connected_gene': 'PDCD11', 'score': 18.23}, {'connected_gene': 'SH3PXD2A', 'score': 12.35}, {'connected_gene': 'PCGF6', 'score': 11.95}, {'connected_gene': 'SLK', 'score': 11.42}, {'connected_gene': 'BORCS7', 'score': 6.61}, {'connected_gene': 'GSTO2', 'score': 5.16}, {'connected_gene': 'ENSG00000222503', 'score': 0.44}, {'connected_gene': 'PIR41281', 'score': 0.28}]
chr10	GH10I104348	104348741	104354232	2.53	[{'connected_gene': 'CFAP58', 'score': 575.17}, {'connected_gene': 'ITPRIP', 'score': 27.03}, {'connected_gene': 'PDCD11', 'score': 11.74}, {'connected_gene': 'ENSG00000260461', 'score': 10.23}, {'connected_gene': 'SFR1', 'score': 4.21}, {'connected_gene': 'GSTO1', 'score': 2.05}, {'connected_gene': 'SLK', 'score': 1.73}, {'connected_gene': 'CFAP58-AS1', 'score': 0.77}]
chr10	GH10I104060	104059383	104059592	0.54	[{'connected_gene': 'COL17A1', 'score': 11.04}, {'connected_gene': 'SFR1', 'score': 10.27}, {'connected_gene': 'SLK', 'score': 9.89}, {'connected_gene': 'MIR936', 'score': 0.39}, {'connected_gene': 'GC10M104086', 'score': 0.31}, {'connected_gene': 'GC10M104085', 'score': 0.31}]
chr10	GH10I104089	104089674	104089971	0.48	[{'connected_gene': 'SFR1', 'score': 59.98}, {'connected_gene': 'GSTO1', 'score': 5.77}, {'connected_gene': 'CFAP58', 'score': 5.6}, {'connected_gene': 'SLK', 'score': 1.78}, {'connected_gene': 'COL17A1', 'score': 0.77}]
chr10	GH10I104032	104032351	104032800	0.4	[{'connected_gene': 'SFR1', 'score': 10.97}, {'connected_gene': 'COL17A1', 'score': 10.2}, {'connected_gene': 'SLK', 'score': 5.83}, {'connected_gene': 'MIR936', 'score': 0.37}, {'connected_gene': 'RN7SL524P', 'score': 0.22}]
chr10	GH10I104109	104109362	104110946	1.45	[{'connected_gene': 'SFR1', 'score': 42.77}, {'connected_gene': 'COL17A1', 'score': 11.61}, {'connected_gene': 'MIR936', 'score': 11.17}, {'connected_gene': 'STN1', 'score': 10.59}, {'connected_gene': 'CFAP43', 'score': 8.04}, {'connected_gene': 'GSTO1', 'score': 6.52}, {'connected_gene': 'CFAP58', 'score': 5.41}, {'connected_gene': 'SLK', 'score': 1.47}]
chr10	GH10I104258	104258914	104261909	1.46	[{'connected_gene': 'GSTO2', 'score': 35.57}, {'connected_gene': 'GSTO1', 'score': 23.89}, {'connected_gene': 'MIR609', 'score': 10.65}, {'connected_gene': 'SFR1', 'score': 7.72}, {'connected_gene': 'SLK', 'score': 3.56}, {'connected_gene': 'CFAP58', 'score': 3.53}, {'connected_gene': 'ITPRIP', 'score': 1.24}, {'connected_gene': 'GC10M104249', 'score': 0.44}, {'connected_gene': 'MIR4482', 'score': 0.44}]
chr10	GH10I103965	103965843	103970825	2	[{'connected_gene': 'LOC102724351', 'score': 550.77}, {'connected_gene': 'SLK', 'score': 550.77}, {'connected_gene': 'PDCD11', 'score': 20.71}, {'connected_gene': 'ENSG00000260461', 'score': 18.82}, {'connected_gene': 'TAF5', 'score': 15.88}, {'connected_gene': 'STN1', 'score': 11.29}, {'connected_gene': 'PCGF6', 'score': 10.19}, {'connected_gene': 'COL17A1', 'score': 9.81}, {'connected_gene': 'GC10P103974', 'score': 0.44}]
chr10	GH10I104027	104027743	104027890	0.2	[{'connected_gene': 'MIR936', 'score': 11.7}, {'connected_gene': 'SLK', 'score': 10.38}, {'connected_gene': 'RN7SL524P', 'score': 0.23}]
chr10	GH10I103887	103887370	103891592	1.61	[{'connected_gene': 'GC10M103885', 'score': 550.77}, {'connected_gene': 'SLK', 'score': 17.77}, {'connected_gene': 'SH3PXD2A', 'score': 11.47}, {'connected_gene': 'MIR936', 'score': 10.68}, {'connected_gene': 'ENSG00000260461', 'score': 10.08}, {'connected_gene': 'STN1', 'score': 5.01}, {'connected_gene': 'COL17A1', 'score': 2.44}, {'connected_gene': 'SFR1', 'score': 2.24}, {'connected_gene': 'GSTO2', 'score': 2.21}, {'connected_gene': 'GSTO1', 'score': 1.33}, {'connected_gene': 'PIR55313', 'score': 0.44}, {'connected_gene': 'GC10M103884', 'score': 0.44}]
chr10	GH10I103691	103691402	103691832	1.29	[{'connected_gene': 'ENSG00000260461', 'score': 19.79}, {'connected_gene': 'PCGF6', 'score': 18.95}, {'connected_gene': 'SFR1', 'score': 12.58}, {'connected_gene': 'SLK', 'score': 12.14}, {'connected_gene': 'SH3PXD2A', 'score': 11.06}, {'connected_gene': 'NEURL1', 'score': 10.15}, {'connected_gene': 'NEURL1-AS1', 'score': 9.95}, {'connected_gene': 'INA', 'score': 1.62}, {'connected_gene': 'ENSG00000222503', 'score': 0.37}, {'connected_gene': 'GC10M103742', 'score': 0.23}]
chr10	GH10I103869	103869557	103873902	1.01	[{'connected_gene': 'PIR55627', 'score': 550.77}, {'connected_gene': 'STN1', 'score': 11.78}, {'connected_gene': 'SH3PXD2A', 'score': 11.47}, {'connected_gene': 'SLK', 'score': 10.77}, {'connected_gene': 'MIR936', 'score': 10.6}, {'connected_gene': 'COL17A1', 'score': 6.44}, {'connected_gene': 'GSTO2', 'score': 4.47}, {'connected_gene': 'ENSG00000260461', 'score': 0.44}]
chr10	GH10I103833	103833202	103841810	1.34	[{'connected_gene': 'ENSG00000260461', 'score': 40.56}, {'connected_gene': 'PDCD11', 'score': 33.65}, {'connected_gene': 'GSTO2', 'score': 4.83}, {'connected_gene': 'STN1', 'score': 4.62}, {'connected_gene': 'SLK', 'score': 4.46}, {'connected_gene': 'SH3PXD2A', 'score': 0.37}, {'connected_gene': 'SH3PXD2A-AS1', 'score': 0.16}]
chr10	GH10I103692	103691981	103693499	1.84	[{'connected_gene': 'ENSG00000260461', 'score': 31.35}, {'connected_gene': 'SFR1', 'score': 12.58}, {'connected_gene': 'SLK', 'score': 12.14}, {'connected_gene': 'PDCD11', 'score': 11.85}, {'connected_gene': 'CALHM2', 'score': 10.52}, {'connected_gene': 'PCGF6', 'score': 9.8}, {'connected_gene': 'STN1', 'score': 4.17}, {'connected_gene': 'AS3MT', 'score': 4.15}, {'connected_gene': 'ENSG00000222503', 'score': 0.37}, {'connected_gene': 'GC10M103742', 'score': 0.25}, {'connected_gene': 'SH3PXD2A', 'score': 0.1}]