PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000300035	[[64657192, 64658274], [64668941, 64669104], [64673156, 64673237], [64673524, 64673709]]	[[64658228, 64658274], [64668941, 64669104], [64673156, 64673237], [64673524, 64673570]]
ENST00000380258	[[64657563, 64658274], [64673156, 64673237], [64673524, 64673643]]	[[64658203, 64658274], [64673156, 64673237], [64673524, 64673570]]
ENST00000559519	[[64657804, 64658274], [64668941, 64669104], [64673524, 64673640]]	[[64658228, 64658274], [64668941, 64669104], [64673524, 64673570]]
ENST00000558008	[[64657932, 64658274], [64665896, 64665963], [64668941, 64669104], [64673156, 64673237], [64673524, 64673637]]	[[64665905, 64665963], [64668941, 64669104], [64673156, 64673237], [64673524, 64673570]]
ENST00000558043	[[64657946, 64658274], [64668941, 64669104], [64673156, 64673354]]	None
ENST00000560234	[[64658066, 64658274], [64668941, 64669104], [64673156, 64673237], [64679645, 64679883]]	None
ENST00000559280	[[64658142, 64658274], [64665354, 64665970]]	None
ENST00000558250	[[64674623, 64675189], [64679645, 64679886]]	None
NM_014736	[[64657192, 64658274], [64668941, 64669104], [64673156, 64673237], [64673524, 64673709]]	[[64658228, 64658274], [64668941, 64669104], [64673156, 64673237], [64673524, 64673570]]
NM_001029989	[[64657192, 64658274], [64673156, 64673237], [64673524, 64673709]]	[[64658203, 64658274], [64673156, 64673237], [64673524, 64673570]]
NR_109934	[[64657192, 64658274], [64668941, 64669104], [64673156, 64673237], [64679645, 64679886]]	None

Promoter

Chrom	Start	End	Description
chr15	64673206	64673210	CAGE_peak_5_at_KIAA0101_5end
chr15	64673630	64673648	CAGE_peak_1_at_KIAA0101_5end
chr15	64673665	64673676	CAGE_peak_2_at_KIAA0101_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I064386	64386859	64389081	2.15	[{'connected_gene': 'TRIP4', 'score': 597.04}, {'connected_gene': 'PCLAF', 'score': 550.77}, {'connected_gene': 'PARP16', 'score': 40.85}, {'connected_gene': 'CSNK1G1', 'score': 21.28}, {'connected_gene': 'ZNF609', 'score': 20.43}, {'connected_gene': 'USP3', 'score': 19.86}, {'connected_gene': 'SNX1', 'score': 13.79}, {'connected_gene': 'UBAP1L', 'score': 12.19}, {'connected_gene': 'ENSG00000265967', 'score': 10.62}, {'connected_gene': 'CILP', 'score': 9.76}, {'connected_gene': 'ENSG00000264937', 'score': 9.73}, {'connected_gene': 'GC15M064400', 'score': 0.39}, {'connected_gene': 'GC15P069502', 'score': 0.29}, {'connected_gene': 'GC15P069473', 'score': 0.29}, {'connected_gene': 'GC15P069478', 'score': 0.29}, {'connected_gene': 'GC15P069472', 'score': 0.29}, {'connected_gene': 'GC15P069477', 'score': 0.29}]
chr15	GH15I064621	64621514	64625526	1.19	[{'connected_gene': 'TRIP4', 'score': 35.28}, {'connected_gene': 'RBPMS2', 'score': 26.66}, {'connected_gene': 'PCLAF', 'score': 5.17}, {'connected_gene': 'SNX1', 'score': 3.92}, {'connected_gene': 'RPL21P15', 'score': 0.44}, {'connected_gene': 'LOC101930091', 'score': 0.39}, {'connected_gene': 'RPS26P50', 'score': 0.29}, {'connected_gene': 'ZNF609', 'score': 0.1}]
chr15	GH15I064354	64354573	64357467	2.03	[{'connected_gene': 'CSNK1G1', 'score': 566.87}, {'connected_gene': 'GC15P069473', 'score': 550.77}, {'connected_gene': 'TRIP4', 'score': 36.44}, {'connected_gene': 'PCLAF', 'score': 12.77}, {'connected_gene': 'ENSG00000259635', 'score': 11.89}, {'connected_gene': 'ZNF609', 'score': 10.25}, {'connected_gene': 'GC15P069502', 'score': 0.77}, {'connected_gene': 'GC15P069478', 'score': 0.77}, {'connected_gene': 'GC15P069472', 'score': 0.77}, {'connected_gene': 'GC15P069477', 'score': 0.77}, {'connected_gene': 'ENSG00000259316', 'score': 0.31}]
chr15	GH15I064378	64378082	64382404	2.01	[{'connected_gene': 'ENSG00000259316', 'score': 550.77}, {'connected_gene': 'PCLAF', 'score': 550.44}, {'connected_gene': 'TRIP4', 'score': 49.43}, {'connected_gene': 'PARP16', 'score': 23.17}, {'connected_gene': 'CSNK1G1', 'score': 21.58}, {'connected_gene': 'ZNF609', 'score': 18.61}, {'connected_gene': 'ENSG00000259635', 'score': 11.89}, {'connected_gene': 'USP3', 'score': 10.99}, {'connected_gene': 'ENSG00000264937', 'score': 10.84}, {'connected_gene': 'SPG21', 'score': 10.19}, {'connected_gene': 'MTFMT', 'score': 9.95}, {'connected_gene': 'USP3-AS1', 'score': 9.69}, {'connected_gene': 'GC15P069502', 'score': 0.31}, {'connected_gene': 'GC15P069473', 'score': 0.31}, {'connected_gene': 'GC15P069477', 'score': 0.31}, {'connected_gene': 'GC15P069478', 'score': 0.31}, {'connected_gene': 'GC15P069472', 'score': 0.31}]
chr15	GH15I064369	64369222	64369371	0.46	[{'connected_gene': 'ENSG00000252774', 'score': 11.1}, {'connected_gene': 'SNX22', 'score': 9.89}, {'connected_gene': 'RBPMS2', 'score': 9.26}, {'connected_gene': 'ENSG00000259316', 'score': 0.39}, {'connected_gene': 'CSNK1G1', 'score': 0.39}, {'connected_gene': 'GC15P069502', 'score': 0.37}, {'connected_gene': 'GC15P069473', 'score': 0.37}, {'connected_gene': 'GC15P069478', 'score': 0.37}, {'connected_gene': 'GC15P069472', 'score': 0.37}, {'connected_gene': 'GC15P069477', 'score': 0.37}, {'connected_gene': 'PCLAF', 'score': 0.37}]
chr15	GH15I064362	64362408	64362702	0.25	[{'connected_gene': 'ENSG00000252774', 'score': 11.54}, {'connected_gene': 'SNX22', 'score': 10.12}, {'connected_gene': 'RNU6-549P', 'score': 9.92}, {'connected_gene': 'RBPMS2', 'score': 9.5}, {'connected_gene': 'PCLAF', 'score': 4.32}, {'connected_gene': 'PIF1', 'score': 2.23}, {'connected_gene': 'GC15P069502', 'score': 0.44}, {'connected_gene': 'GC15P069473', 'score': 0.44}, {'connected_gene': 'GC15P069478', 'score': 0.44}, {'connected_gene': 'GC15P069472', 'score': 0.44}, {'connected_gene': 'CSNK1G1', 'score': 0.44}, {'connected_gene': 'GC15P069477', 'score': 0.44}, {'connected_gene': 'ENSG00000259316', 'score': 0.37}]
chr15	GH15I064368	64368201	64368400	0.56	[{'connected_gene': 'ENSG00000252774', 'score': 11.52}, {'connected_gene': 'SNX22', 'score': 10.12}, {'connected_gene': 'RNU6-549P', 'score': 9.92}, {'connected_gene': 'RBPMS2', 'score': 9.5}, {'connected_gene': 'GC15P069473', 'score': 0.39}, {'connected_gene': 'ENSG00000259316', 'score': 0.39}, {'connected_gene': 'CSNK1G1', 'score': 0.39}, {'connected_gene': 'GC15P069477', 'score': 0.39}, {'connected_gene': 'GC15P069502', 'score': 0.37}, {'connected_gene': 'GC15P069478', 'score': 0.37}, {'connected_gene': 'GC15P069472', 'score': 0.37}, {'connected_gene': 'PCLAF', 'score': 0.37}]
chr15	GH15I065183	65183239	65186285	2.08	[{'connected_gene': 'GC15P069466', 'score': 550.77}, {'connected_gene': 'GC15P069460', 'score': 550.77}, {'connected_gene': 'GC15P069465', 'score': 550.77}, {'connected_gene': 'PIR37257', 'score': 550.77}, {'connected_gene': 'GC15P069464', 'score': 550.77}, {'connected_gene': 'GC15P069459', 'score': 550.77}, {'connected_gene': 'GC15P069462', 'score': 550.77}, {'connected_gene': 'GC15P069458', 'score': 550.77}, {'connected_gene': 'GC15P069461', 'score': 550.77}, {'connected_gene': 'CLPX', 'score': 550.77}, {'connected_gene': 'PARP16', 'score': 36.14}, {'connected_gene': 'INTS14', 'score': 24.08}, {'connected_gene': 'SPG21', 'score': 14.18}, {'connected_gene': 'TRIP4', 'score': 14.07}, {'connected_gene': 'ZNF609', 'score': 12.91}, {'connected_gene': 'SNORA24B', 'score': 12.34}, {'connected_gene': 'RNU5A-1', 'score': 12.33}, {'connected_gene': 'SLC24A1', 'score': 12.32}, {'connected_gene': 'CILP', 'score': 12.14}, {'connected_gene': 'RNU5B-1', 'score': 11.75}, {'connected_gene': 'PDCD7', 'score': 11.58}, {'connected_gene': 'UBAP1L', 'score': 8.02}, {'connected_gene': 'PCLAF', 'score': 5.05}, {'connected_gene': 'GC15P069470', 'score': 0.37}, {'connected_gene': 'GC15P069467', 'score': 0.37}, {'connected_gene': 'PIR39480', 'score': 0.37}, {'connected_gene': 'GC15P069468', 'score': 0.37}, {'connected_gene': 'GC15P069469', 'score': 0.37}]