PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000375071	[[20915440, 20915776], [20931420, 20931532], [20940334, 20940392], [20944944, 20945401]]	[[20915622, 20915776], [20931420, 20931532], [20940334, 20940392], [20944944, 20945061]]
ENST00000461985	[[20915578, 20915776], [20931420, 20931532], [20944944, 20945396]]	None
NM_001785	[[20915443, 20915776], [20931420, 20931532], [20940334, 20940392], [20944944, 20945401]]	[[20915622, 20915776], [20931420, 20931532], [20940334, 20940392], [20944944, 20945061]]

Promoter

Chrom	Start	End	Description
chr1	20915390	20915406	CAGE_peak_3_at_CDA_5end
chr1	20915409	20915492	CAGE_peak_2_at_CDA_5end
chr1	20915530	20915635	CAGE_peak_1_at_CDA_5end
chr1	20915737	20915741	CAGE_peak_4_at_CDA_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I020587	20587400	20588001	1.16	[{'connected_gene': 'CDA', 'score': 555.09}, {'connected_gene': 'MUL1', 'score': 4.89}, {'connected_gene': 'FAM43B', 'score': 0.28}]
chr1	GH01I020624	20624464	20626889	0.54	[{'connected_gene': 'CDA', 'score': 22.73}, {'connected_gene': 'PINK1', 'score': 5.43}, {'connected_gene': 'CAMK2N1', 'score': 5.08}, {'connected_gene': 'GC01P020619', 'score': 0.44}]
chr1	GH01I020601	20601201	20605429	1.42	[{'connected_gene': 'CDA', 'score': 26.94}, {'connected_gene': 'PINK1', 'score': 13.09}, {'connected_gene': 'HP1BP3', 'score': 11.28}, {'connected_gene': 'DDOST', 'score': 10.01}, {'connected_gene': 'GC01P020619', 'score': 0.37}]
chr1	GH01I020588	20588261	20591800	1.75	[{'connected_gene': 'CDA', 'score': 577.98}, {'connected_gene': 'PINK1', 'score': 17.89}, {'connected_gene': 'FAM43B', 'score': 11.22}, {'connected_gene': 'MUL1', 'score': 9.99}, {'connected_gene': 'GC01P020619', 'score': 0.31}]
chr1	GH01I020596	20596601	20598400	0.65	[{'connected_gene': 'CDA', 'score': 27.7}, {'connected_gene': 'GC01P020619', 'score': 0.34}]
chr1	GH01I020616	20616401	20616800	0.51	[{'connected_gene': 'CDA', 'score': 13.14}, {'connected_gene': 'GC01P020619', 'score': 0.77}]
chr1	GH01I019591	19591509	19592435	0.63	[{'connected_gene': 'AKR7A2', 'score': 6.53}, {'connected_gene': 'CDA', 'score': 5.09}, {'connected_gene': 'GC01P019599', 'score': 0.77}, {'connected_gene': 'LOC105378614', 'score': 0.77}, {'connected_gene': 'LOC105376817', 'score': 0.21}]
chr1	GH01I020575	20575348	20575517	1.13	[{'connected_gene': 'PINK1', 'score': 12.29}, {'connected_gene': 'CDA', 'score': 11.8}, {'connected_gene': 'MUL1', 'score': 10.73}, {'connected_gene': 'FAM43B', 'score': 0.34}]
chr1	GH01I020610	20610902	20615067	1.32	[{'connected_gene': 'PINK1', 'score': 37.46}, {'connected_gene': 'CDA', 'score': 34.21}, {'connected_gene': 'OTUD3', 'score': 13.3}, {'connected_gene': 'FAM43B', 'score': 11.41}, {'connected_gene': 'DDOST', 'score': 5.15}, {'connected_gene': 'GC01P020619', 'score': 0.44}]
chr1	GH01I020609	20609452	20610297	0.2	[{'connected_gene': 'PINK1', 'score': 36.31}, {'connected_gene': 'CDA', 'score': 33.76}, {'connected_gene': 'FAM43B', 'score': 11.42}, {'connected_gene': 'GC01P020619', 'score': 0.44}]
chr1	GH01I020605	20605549	20607816	0.54	[{'connected_gene': 'PINK1', 'score': 23.18}, {'connected_gene': 'CDA', 'score': 22.53}, {'connected_gene': 'GC01P020619', 'score': 0.39}]
chr1	GH01I020576	20576448	20576597	0.31	[{'connected_gene': 'PINK1', 'score': 12.29}, {'connected_gene': 'MUL1', 'score': 10.73}, {'connected_gene': 'CDA', 'score': 0.39}, {'connected_gene': 'FAM43B', 'score': 0.34}]
chr1	GH01I020678	20678601	20679200	0.69	[{'connected_gene': 'PINK1', 'score': 11.41}, {'connected_gene': 'SH2D5', 'score': 11.12}, {'connected_gene': 'ENSG00000233069', 'score': 11.12}, {'connected_gene': 'CDA', 'score': 9.63}, {'connected_gene': 'MUL1', 'score': 6.22}, {'connected_gene': 'DDOST', 'score': 0.37}, {'connected_gene': 'ENSG00000235432', 'score': 0.37}, {'connected_gene': 'KIF17', 'score': 0.28}]
chr1	GH01I020632	20632788	20635240	2.01	[{'connected_gene': 'PINK1', 'score': 580.42}, {'connected_gene': 'MIR6084', 'score': 550.77}, {'connected_gene': 'CDA', 'score': 22.76}, {'connected_gene': 'PIR40855', 'score': 0.77}]
chr1	GH01I020555	20555485	20555737	0.33	[{'connected_gene': 'CAMK2N1', 'score': 2.31}, {'connected_gene': 'VWA5B1', 'score': 1.6}, {'connected_gene': 'FAM43B', 'score': 0.77}, {'connected_gene': 'CDA', 'score': 0.29}]
chr1	GH01I019622	19622475	19624369	0.83	[{'connected_gene': 'MINOS1', 'score': 13.14}, {'connected_gene': 'LOC105378614', 'score': 13.14}, {'connected_gene': 'RNU4-28P', 'score': 10.27}, {'connected_gene': 'CDA', 'score': 5.29}, {'connected_gene': 'AKR7A2', 'score': 4.92}, {'connected_gene': 'NBL1', 'score': 0.37}, {'connected_gene': 'RPS14P3', 'score': 0.37}, {'connected_gene': 'MINOS1-NBL1', 'score': 0.31}]
chr1	GH01I019623	19621069	19622456	0.2	[{'connected_gene': 'MINOS1', 'score': 13.17}, {'connected_gene': 'LOC105378614', 'score': 13.17}, {'connected_gene': 'RNU4-28P', 'score': 10.27}, {'connected_gene': 'NBL1', 'score': 6.22}, {'connected_gene': 'CDA', 'score': 5.3}, {'connected_gene': 'RPS14P3', 'score': 0.39}, {'connected_gene': 'MINOS1-NBL1', 'score': 0.34}]
chr1	GH01I020551	20551307	20554864	1.55	[{'connected_gene': 'FAM43B', 'score': 560.08}, {'connected_gene': 'GC01P020552', 'score': 550.77}, {'connected_gene': 'PIR52351', 'score': 550.77}, {'connected_gene': 'MUL1', 'score': 7.01}, {'connected_gene': 'CDA', 'score': 0.28}]
chr1	GH01I020578	20578740	20579733	0.2	[{'connected_gene': 'FAM43B', 'score': 11.24}, {'connected_gene': 'CAMK2N1', 'score': 9.78}, {'connected_gene': 'DDOST', 'score': 6.62}, {'connected_gene': 'CDA', 'score': 0.44}]
chr1	GH01I021020	21020823	21023464	1.59	[{'connected_gene': 'GC01P021023', 'score': 550.77}, {'connected_gene': 'HP1BP3', 'score': 12.46}, {'connected_gene': 'MIR1256', 'score': 12.37}, {'connected_gene': 'EIF4G3', 'score': 6.5}, {'connected_gene': 'ECE1', 'score': 4.49}, {'connected_gene': 'CDA', 'score': 1.44}, {'connected_gene': 'RPS15AP6', 'score': 0.37}]